RNA–Protein interactions for RNA: ENST00000565151.1

USB1-210, Transcript of U6 snRNA biogenesis phosphodiesterase 1, humanhuman

TSL 2

Gene USB1, Length 886 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USB1-210ENST00000565151 NISCHQ9Y2I1 1504 aa36.81■■■■□ 3.48
USB1-210ENST00000565151 CCDC180Q9P1Z9 1646 aa32.92■■■□□ 2.86
USB1-210ENST00000565151 ABCC9O60706 1549 aa32.63■■■□□ 2.81
USB1-210ENST00000565151 RB1CC1Q8TDY2 1594 aa31.13■■■□□ 2.57
USB1-210ENST00000565151 NACADO15069 1562 aa31■■■□□ 2.55
USB1-210ENST00000565151 DCAF8L2P0C7V8 631 aa30.82■■■□□ 2.52
USB1-210ENST00000565151 UNC13AQ9UPW8 1703 aa30.7■■■□□ 2.51
USB1-210ENST00000565151 MYO15BQ96JP2 1530 aa30.64■■■□□ 2.5
USB1-210ENST00000565151 ZCCHC6Q5VYS8 1495 aaKnown RBP30.57■■■□□ 2.48
USB1-210ENST00000565151 DNAJC5BQ9UF47 199 aa30.47■■■□□ 2.47
USB1-210ENST00000565151 PABPN1Q86U42 306 aaKnown RBP eCLIP30.42■■■□□ 2.46
USB1-210ENST00000565151 BICRAQ9NZM4 1560 aa30.39■■■□□ 2.46
USB1-210ENST00000565151 DCAF1Q9Y4B6 1507 aa30.38■■■□□ 2.45
USB1-210ENST00000565151 SCRIBQ14160 1630 aa30.04■■■□□ 2.4
USB1-210ENST00000565151 SHROOM4Q9ULL8 1493 aa29.76■■■□□ 2.35
USB1-210ENST00000565151 CC2D2AQ9P2K1 1620 aa29.54■■■□□ 2.32
USB1-210ENST00000565151 EIF4G1Q04637 1599 aaKnown RBP29.52■■■□□ 2.32
USB1-210ENST00000565151 CECR2Q9BXF3 1484 aa29.32■■■□□ 2.28
USB1-210ENST00000565151 SMARCA4P51532 1647 aa28.69■■■□□ 2.18
USB1-210ENST00000565151 NCAPD3P42695 1498 aa28.62■■■□□ 2.17
USB1-210ENST00000565151 ATAD2BQ9ULI0 1458 aa28.6■■■□□ 2.17
USB1-210ENST00000565151 BAZ1AQ9NRL2 1556 aaPredicted RBP28.5■■■□□ 2.15
USB1-210ENST00000565151 SMARCA2P51531 1590 aa28.47■■■□□ 2.15
USB1-210ENST00000565151 HMGXB3Q12766 1538 aa28.43■■■□□ 2.14
USB1-210ENST00000565151 MROH2BQ7Z745 1585 aa28.42■■■□□ 2.14
USB1-210ENST00000565151 PEG3Q9GZU2 1588 aa28.39■■■□□ 2.14
USB1-210ENST00000565151 BAZ1BQ9UIG0 1483 aaKnown RBP28.27■■■□□ 2.12
USB1-210ENST00000565151 NESP48681 1621 aa28.18■■■□□ 2.1
USB1-210ENST00000565151 WIZO95785 1651 aa28.14■■■□□ 2.1
USB1-210ENST00000565151 ERCC6Q03468 1493 aa28.03■■■□□ 2.08
USB1-210ENST00000565151 LAMC3Q9Y6N6 1575 aa27.93■■■□□ 2.06
USB1-210ENST00000565151 CUX2O14529 1486 aa27.92■■■□□ 2.06
USB1-210ENST00000565151 RSF1Q96T23 1441 aaPredicted RBP27.88■■■□□ 2.05
USB1-210ENST00000565151 KIF21AQ7Z4S6 1674 aa27.87■■■□□ 2.05
USB1-210ENST00000565151 THOC2Q8NI27 1593 aaKnown RBP27.84■■■□□ 2.05
USB1-210ENST00000565151 CADPSQ9ULU8 1353 aa27.73■■■□□ 2.03
USB1-210ENST00000565151 TOP2AP11388 1531 aaKnown RBP27.69■■■□□ 2.02
USB1-210ENST00000565151 PDS5BQ9NTI5 1447 aa27.67■■■□□ 2.02
USB1-210ENST00000565151 DNAJC5Q9H3Z4 198 aa27.63■■■□□ 2.01
USB1-210ENST00000565151 CFTRP13569 1480 aa27.51■■■□□ 2
USB1-210ENST00000565151 MRC2Q9UBG0 1479 aa27.48■■□□□ 1.99
USB1-210ENST00000565151 WDR62O43379 1518 aa27.46■■□□□ 1.99
USB1-210ENST00000565151 FANCD2Q9BXW9 1451 aa27.44■■□□□ 1.98
USB1-210ENST00000565151 CEP164Q9UPV0 1460 aa27.41■■□□□ 1.98
USB1-210ENST00000565151 CCDC88BA6NC98 1476 aa27.4■■□□□ 1.98
USB1-210ENST00000565151 PRDM2Q13029 1718 aa27.39■■□□□ 1.98
USB1-210ENST00000565151 URB2Q14146 1524 aaKnown RBP27.28■■□□□ 1.96
USB1-210ENST00000565151 TOPBP1Q92547 1522 aa26.99■■□□□ 1.91
USB1-210ENST00000565151 ZNF608Q9ULD9 1512 aaPredicted RBP26.9■■□□□ 1.9
USB1-210ENST00000565151 DNMBPQ6XZF7 1577 aa26.9■■□□□ 1.9
USB1-210ENST00000565151 IFT140Q96RY7 1462 aa26.84■■□□□ 1.89
USB1-210ENST00000565151 ABCC8Q09428 1581 aa26.84■■□□□ 1.89
USB1-210ENST00000565151 TARBP1Q13395 1621 aaKnown RBP26.8■■□□□ 1.88
USB1-210ENST00000565151 SUPT5HO00267 1087 aaKnown RBP26.78■■□□□ 1.88
USB1-210ENST00000565151 EIF4G3O43432 1585 aaKnown RBP26.75■■□□□ 1.87
USB1-210ENST00000565151 POLA1P09884 1462 aaPredicted RBP26.73■■□□□ 1.87
USB1-210ENST00000565151 CUX1P39880 1505 aa26.68■■□□□ 1.86
USB1-210ENST00000565151 RAD54L2Q9Y4B4 1467 aa26.66■■□□□ 1.86
USB1-210ENST00000565151 OSCARQ8IYS5 282 aa26.65■■□□□ 1.86
USB1-210ENST00000565151 AQRO60306 1485 aaKnown RBP eCLIP26.64■■□□□ 1.86
USB1-210ENST00000565151 FGD5Q6ZNL6 1462 aa26.6■■□□□ 1.85
USB1-210ENST00000565151 CHD1O14646 1710 aa26.57■■□□□ 1.84
USB1-210ENST00000565151 SOGA1O94964 1423 aa26.56■■□□□ 1.84
USB1-210ENST00000565151 WDR97A6NE52 1622 aa26.51■■□□□ 1.83
USB1-210ENST00000565151 TDRD9Q8NDG6 1382 aaKnown RBP26.5■■□□□ 1.83
USB1-210ENST00000565151 TRIM41Q8WV44 630 aa26.49■■□□□ 1.83
USB1-210ENST00000565151 RIMBP3CA6NJZ7 1639 aa26.45■■□□□ 1.82
USB1-210ENST00000565151 RIMBP3BA6NNM3 1639 aa26.45■■□□□ 1.82
USB1-210ENST00000565151 RIMBP3Q9UFD9 1639 aa26.45■■□□□ 1.82
USB1-210ENST00000565151 SNAPC4Q5SXM2 1469 aa26.36■■□□□ 1.81
USB1-210ENST00000565151 PBRM1Q86U86 1689 aa26.35■■□□□ 1.81
USB1-210ENST00000565151 ARHGEF11O15085 1522 aa26.34■■□□□ 1.81
USB1-210ENST00000565151 BIVM-ERCC5R4GMW8 1640 aa26.33■■□□□ 1.81
USB1-210ENST00000565151 SYNJ1O43426 1573 aa26.33■■□□□ 1.8
USB1-210ENST00000565151 ABCA5Q8WWZ7 1642 aa26.31■■□□□ 1.8
USB1-210ENST00000565151 ABCA10Q8WWZ4 1543 aa26.29■■□□□ 1.8
USB1-210ENST00000565151 TOP2BQ02880 1626 aa26.29■■□□□ 1.8
USB1-210ENST00000565151 FBLN2P98095 1184 aa26.29■■□□□ 1.8
USB1-210ENST00000565151 GRIN2BQ13224 1484 aa26.28■■□□□ 1.8
USB1-210ENST00000565151 GAPVD1Q14C86 1478 aa26.25■■□□□ 1.79
USB1-210ENST00000565151 MAGI1Q96QZ7 1491 aaPredicted RBP26.25■■□□□ 1.79
USB1-210ENST00000565151 WRNQ14191 1432 aaPredicted RBP eCLIP26.22■■□□□ 1.79
USB1-210ENST00000565151 CLASP1Q7Z460 1538 aa26.21■■□□□ 1.79
USB1-210ENST00000565151 SYNJ2O15056 1496 aa26.17■■□□□ 1.78
USB1-210ENST00000565151 CHMP7Q8WUX9 453 aaPredicted RBP26.13■■□□□ 1.77
USB1-210ENST00000565151 ARAP1Q96P48 1450 aa26.12■■□□□ 1.77
USB1-210ENST00000565151 CYB5RLQ6IPT4 315 aa26.07■■□□□ 1.76
USB1-210ENST00000565151 ADAMTS12P58397 1594 aa26.06■■□□□ 1.76
USB1-210ENST00000565151 GRIN2AQ12879 1464 aa25.98■■□□□ 1.75
USB1-210ENST00000565151 CEP170Q5SW79 1584 aa25.96■■□□□ 1.75
USB1-210ENST00000565151 ERICH3Q5RHP9 1530 aa25.95■■□□□ 1.74
USB1-210ENST00000565151 FHAD1B1AJZ9 1412 aa25.9■■□□□ 1.74
USB1-210ENST00000565151 NUP160Q12769 1436 aa25.9■■□□□ 1.74
USB1-210ENST00000565151 ERCC6L2Q5T890 1561 aa25.9■■□□□ 1.74
USB1-210ENST00000565151 SHROOM2Q13796 1616 aa25.83■■□□□ 1.73
USB1-210ENST00000565151 AEBP2Q6ZN18 517 aaPredicted RBP25.75■■□□□ 1.71
USB1-210ENST00000565151 IGF1RP08069 1367 aa25.72■■□□□ 1.71
USB1-210ENST00000565151 RUSC2Q8N2Y8 1516 aa25.69■■□□□ 1.7
USB1-210ENST00000565151 KIF27Q86VH2 1401 aa25.67■■□□□ 1.7
USB1-210ENST00000565151 CUL7Q14999 1698 aa25.65■■□□□ 1.7
Retrieved 100 of 20,778 RNA–protein pairs in 12.7 ms