RNA–Protein interactions for RNA: ENST00000566082.1

USB1-212, Transcript of U6 snRNA biogenesis phosphodiesterase 1, humanhuman

TSL 2

Gene USB1, Length 3,888 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USB1-212ENST00000566082 NISCHQ9Y2I1 1504 aa18.85■□□□□ 0.61
USB1-212ENST00000566082 SUPT5HO00267 1087 aaKnown RBP17.83■□□□□ 0.44
USB1-212ENST00000566082 DCAF8L2P0C7V8 631 aa17.73■□□□□ 0.43
USB1-212ENST00000566082 SHROOM4Q9ULL8 1493 aa17.71■□□□□ 0.43
USB1-212ENST00000566082 PCGF6Q9BYE7 350 aa17.2■□□□□ 0.34
USB1-212ENST00000566082 EHMT2Q96KQ7 1210 aa16.91■□□□□ 0.3
USB1-212ENST00000566082 HRCP23327 699 aa16.88■□□□□ 0.29
USB1-212ENST00000566082 PPARGC1BQ86YN6 1023 aaKnown RBP16.71■□□□□ 0.26
USB1-212ENST00000566082 FAM9AQ8IZU1 332 aaPredicted RBP16.68■□□□□ 0.26
USB1-212ENST00000566082 CHIC1Q5VXU3 224 aa16.67■□□□□ 0.26
USB1-212ENST00000566082 LOC105371045A0A1W2PR82 267 aa16.55■□□□□ 0.24
USB1-212ENST00000566082 ZEB1P37275 1124 aaPredicted RBP16.46■□□□□ 0.23
USB1-212ENST00000566082 TRIM26Q12899 539 aaPredicted RBP16.44■□□□□ 0.22
USB1-212ENST00000566082 TRIM41Q8WV44 630 aa16.41■□□□□ 0.22
USB1-212ENST00000566082 TTBK1Q5TCY1 1321 aaPredicted RBP16.4■□□□□ 0.22
USB1-212ENST00000566082 PELP1Q8IZL8 1130 aaKnown RBP16.39■□□□□ 0.21
USB1-212ENST00000566082 CCER1Q8TC90 406 aaPredicted RBP16.29■□□□□ 0.2
USB1-212ENST00000566082 CCDC180Q9P1Z9 1646 aa16.22■□□□□ 0.19
USB1-212ENST00000566082 CENPBP07199 599 aaPredicted RBP16.21■□□□□ 0.19
USB1-212ENST00000566082 YTHDC1Q96MU7 727 aaKnown RBP16.06■□□□□ 0.16
USB1-212ENST00000566082 MYO15BQ96JP2 1530 aa16.06■□□□□ 0.16
USB1-212ENST00000566082 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP15.98■□□□□ 0.15
USB1-212ENST00000566082 APLP2Q06481 763 aa15.96■□□□□ 0.15
USB1-212ENST00000566082 RANGAP1P46060 587 aaPredicted RBP15.9■□□□□ 0.14
USB1-212ENST00000566082 UBTFP17480 764 aaKnown RBP15.89■□□□□ 0.13
USB1-212ENST00000566082 DCAF1Q9Y4B6 1507 aa15.86■□□□□ 0.13
USB1-212ENST00000566082 DIEXFQ68CQ4 756 aaKnown RBP15.84■□□□□ 0.13
USB1-212ENST00000566082 MYT1Q01538 1121 aa15.82■□□□□ 0.12
USB1-212ENST00000566082 ZCCHC6Q5VYS8 1495 aaKnown RBP15.82■□□□□ 0.12
USB1-212ENST00000566082 GTF3C3Q9Y5Q9 886 aa15.79■□□□□ 0.12
USB1-212ENST00000566082 SCAF1Q9H7N4 1312 aaKnown RBP15.75■□□□□ 0.11
USB1-212ENST00000566082 ACIN1Q9UKV3 1341 aaKnown RBP15.71■□□□□ 0.11
USB1-212ENST00000566082 HNRNPUL2Q1KMD3 747 aaKnown RBP15.69■□□□□ 0.1
USB1-212ENST00000566082 NEUROD1Q13562 356 aa15.59■□□□□ 0.09
USB1-212ENST00000566082 ZNF316A6NFI3 1004 aaPredicted RBP15.47■□□□□ 0.07
USB1-212ENST00000566082 ITGAEP38570 1179 aa15.43■□□□□ 0.06
USB1-212ENST00000566082 NEFLP07196 543 aa15.4■□□□□ 0.06
USB1-212ENST00000566082 ATP1B4Q9UN42 357 aaPredicted RBP15.38■□□□□ 0.05
USB1-212ENST00000566082 ERICH6Q7L0X2 663 aa15.37■□□□□ 0.05
USB1-212ENST00000566082 SCRIBQ14160 1630 aa15.28■□□□□ 0.04
USB1-212ENST00000566082 RSF1Q96T23 1441 aaPredicted RBP15.25■□□□□ 0.03
USB1-212ENST00000566082 BCANQ96GW7 911 aa15.25■□□□□ 0.03
USB1-212ENST00000566082 CSRNP3Q8WYN3 585 aa15.24■□□□□ 0.03
USB1-212ENST00000566082 ABCC9O60706 1549 aa15.23■□□□□ 0.03
USB1-212ENST00000566082 MIER1Q8N108 512 aa15.22■□□□□ 0.03
USB1-212ENST00000566082 NACADO15069 1562 aa15.13■□□□□ 0.01
USB1-212ENST00000566082 PABPN1Q86U42 306 aaKnown RBP eCLIP15.07■□□□□ 0
USB1-212ENST00000566082 CEP162Q5TB80 1403 aa15.02□□□□□ -0.01
USB1-212ENST00000566082 FAM50AQ14320 339 aaKnown RBP15□□□□□ -0.01
USB1-212ENST00000566082 RB1CC1Q8TDY2 1594 aa15□□□□□ -0.01
USB1-212ENST00000566082 CNGB1Q14028 1251 aaPredicted RBP14.97□□□□□ -0.01
USB1-212ENST00000566082 FKBP8Q14318 412 aa14.95□□□□□ -0.02
USB1-212ENST00000566082 CECR2Q9BXF3 1484 aa14.91□□□□□ -0.02
USB1-212ENST00000566082 ANP32CO43423 234 aa14.91□□□□□ -0.02
USB1-212ENST00000566082 CLSPNQ9HAW4 1339 aa14.9□□□□□ -0.02
USB1-212ENST00000566082 DDX10Q13206 875 aaKnown RBP14.89□□□□□ -0.03
USB1-212ENST00000566082 POLR3GLQ9BT43 218 aa14.89□□□□□ -0.03
USB1-212ENST00000566082 TNIKQ9UKE5 1360 aa14.85□□□□□ -0.03
USB1-212ENST00000566082 CLIP1P30622 1438 aa14.85□□□□□ -0.03
USB1-212ENST00000566082 TRIM52Q96A61 297 aa14.83□□□□□ -0.04
USB1-212ENST00000566082 SOGA1O94964 1423 aa14.81□□□□□ -0.04
USB1-212ENST00000566082 SUPT16HQ9Y5B9 1047 aaKnown RBP14.81□□□□□ -0.04
USB1-212ENST00000566082 CDK11AQ9UQ88 783 aaPredicted RBP14.8□□□□□ -0.04
USB1-212ENST00000566082 HIRIP3Q9BW71 556 aaPredicted RBP14.79□□□□□ -0.04
USB1-212ENST00000566082 GOLGA3Q08378 1498 aa14.78□□□□□ -0.04
USB1-212ENST00000566082 P3H3Q8IVL6 736 aa14.78□□□□□ -0.04
USB1-212ENST00000566082 MROH2BQ7Z745 1585 aa14.75□□□□□ -0.05
USB1-212ENST00000566082 EEA1Q15075 1411 aa14.75□□□□□ -0.05
USB1-212ENST00000566082 ANP32EQ9BTT0 268 aa14.73□□□□□ -0.05
USB1-212ENST00000566082 CCDC88BA6NC98 1476 aa14.72□□□□□ -0.05
USB1-212ENST00000566082 ABCC8Q09428 1581 aa14.71□□□□□ -0.05
USB1-212ENST00000566082 HNRNPUQ00839 825 aaKnown RBP eCLIP14.7□□□□□ -0.06
USB1-212ENST00000566082 IRX6P78412 446 aaPredicted RBP14.68□□□□□ -0.06
USB1-212ENST00000566082 WRNQ14191 1432 aaPredicted RBP eCLIP14.68□□□□□ -0.06
USB1-212ENST00000566082 RTL5Q5HYW3 569 aaPredicted RBP14.67□□□□□ -0.06
USB1-212ENST00000566082 CEP164Q9UPV0 1460 aa14.62□□□□□ -0.07
USB1-212ENST00000566082 TONSLQ96HA7 1378 aa14.61□□□□□ -0.07
USB1-212ENST00000566082 WIZO95785 1651 aa14.6□□□□□ -0.07
USB1-212ENST00000566082 TSHZ2Q9NRE2 1034 aa14.59□□□□□ -0.07
USB1-212ENST00000566082 BAZ1AQ9NRL2 1556 aaPredicted RBP14.58□□□□□ -0.07
USB1-212ENST00000566082 SIN3AQ96ST3 1273 aa14.57□□□□□ -0.08
USB1-212ENST00000566082 ZNF326Q5BKZ1 582 aaKnown RBP14.56□□□□□ -0.08
USB1-212ENST00000566082 FAM9BQ8IZU0 186 aa14.56□□□□□ -0.08
USB1-212ENST00000566082 DAXXQ9UER7 740 aaPredicted RBP14.56□□□□□ -0.08
USB1-212ENST00000566082 VPS8Q8N3P4 1428 aa14.54□□□□□ -0.08
USB1-212ENST00000566082 RUSC2Q8N2Y8 1516 aa14.54□□□□□ -0.08
USB1-212ENST00000566082 KANK4Q5T7N3 995 aaPredicted RBP14.53□□□□□ -0.08
USB1-212ENST00000566082 KCNH8Q96L42 1107 aa14.52□□□□□ -0.09
USB1-212ENST00000566082 ARID3CA6NKF2 412 aa14.5□□□□□ -0.09
USB1-212ENST00000566082 BCL11AQ9H165 835 aa14.5□□□□□ -0.09
USB1-212ENST00000566082 NBR1Q14596 966 aa14.5□□□□□ -0.09
USB1-212ENST00000566082 RBM19Q9Y4C8 960 aaKnown RBP14.48□□□□□ -0.09
USB1-212ENST00000566082 UNC13AQ9UPW8 1703 aa14.47□□□□□ -0.09
USB1-212ENST00000566082 ANP32AP39687 249 aaKnown RBP14.46□□□□□ -0.09
USB1-212ENST00000566082 NPM2Q86SE8 214 aaKnown RBP14.46□□□□□ -0.09
USB1-212ENST00000566082 CCNB3Q8WWL7 1395 aa14.46□□□□□ -0.1
USB1-212ENST00000566082 CHIC2Q9UKJ5 165 aa14.44□□□□□ -0.1
USB1-212ENST00000566082 MRS2Q9HD23 443 aa14.43□□□□□ -0.1
USB1-212ENST00000566082 DHX57Q6P158 1386 aaKnown RBP14.41□□□□□ -0.1
USB1-212ENST00000566082 SENP3-EIF4A1A0A087X0R7 540 aa14.4□□□□□ -0.11
Retrieved 100 of 20,778 RNA–protein pairs in 7.8 ms