Protein–RNA interactions for Protein: A8TX70

COL6A5, Collagen alpha-5(VI) chain, humanhuman

Predictions only

Length 2,615 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A5A8TX70 TRA2A-201ENST00000297071 1845 ntAPPRIS P3 TSL 1 (best) BASIC12.36□□□□□ -0.43
COL6A5A8TX70 PHF12-201ENST00000268756 2957 ntTSL 1 (best) BASIC12.35□□□□□ -0.43
COL6A5A8TX70 CEACAM16-201ENST00000405314 1583 ntAPPRIS P1 TSL 5 BASIC12.35□□□□□ -0.43
COL6A5A8TX70 PFKL-201ENST00000349048 2912 ntAPPRIS P1 TSL 1 (best) BASIC12.35□□□□□ -0.43
COL6A5A8TX70 ZFP90-203ENST00000563169 2512 ntAPPRIS P1 TSL 1 (best) BASIC12.35□□□□□ -0.43
COL6A5A8TX70 PDCD1-201ENST00000334409 2114 ntAPPRIS P1 TSL 1 (best) BASIC12.35□□□□□ -0.43
COL6A5A8TX70 KLK6-202ENST00000376851 1708 ntAPPRIS P1 TSL 1 (best) BASIC12.35□□□□□ -0.43
COL6A5A8TX70 EPS8L2-205ENST00000526198 2289 ntAPPRIS ALT2 TSL 1 (best) BASIC12.35□□□□□ -0.43
COL6A5A8TX70 NKX3-2-201ENST00000382438 2801 ntAPPRIS P1 TSL 1 (best) BASIC12.35□□□□□ -0.43
COL6A5A8TX70 GLRB-207ENST00000541722 2765 ntTSL 5 BASIC12.35□□□□□ -0.43
COL6A5A8TX70 LRCH3-207ENST00000441090 2034 ntTSL 2 BASIC12.35□□□□□ -0.43
COL6A5A8TX70 FAM46B-201ENST00000289166 2368 ntAPPRIS P1 TSL 1 (best) BASIC12.35□□□□□ -0.43
COL6A5A8TX70 TNFSF11-201ENST00000239849 911 ntTSL 5 BASIC12.35□□□□□ -0.43
COL6A5A8TX70 MRPL19-201ENST00000358788 693 ntTSL 5 BASIC12.35□□□□□ -0.43
COL6A5A8TX70 PSME1-202ENST00000382708 1136 ntTSL 2 BASIC12.35□□□□□ -0.43
COL6A5A8TX70 ACTG1P2-201ENST00000415776 1125 ntBASIC12.35□□□□□ -0.43
COL6A5A8TX70 ACTG1P11-201ENST00000425411 1125 ntBASIC12.35□□□□□ -0.43
COL6A5A8TX70 AL805961.1-203ENST00000641078 1258 ntBASIC12.35□□□□□ -0.43
COL6A5A8TX70 TMEM25-202ENST00000354064 1965 ntTSL 2 BASIC12.35□□□□□ -0.43
COL6A5A8TX70 C2CD2L-205ENST00000528586 2320 ntTSL 2 BASIC12.35□□□□□ -0.43
COL6A5A8TX70 PANK2-209ENST00000621507 1763 ntTSL 1 (best) BASIC12.35□□□□□ -0.43
COL6A5A8TX70 GRIN1-208ENST00000371561 5149 ntTSL 1 (best) BASIC12.35□□□□□ -0.43
COL6A5A8TX70 PTPRJ-202ENST00000440289 3158 ntTSL 1 (best) BASIC12.35□□□□□ -0.43
COL6A5A8TX70 CPQ-201ENST00000220763 1947 ntAPPRIS P1 TSL 1 (best) BASIC12.35□□□□□ -0.43
COL6A5A8TX70 POLR3D-201ENST00000306433 1931 ntAPPRIS P1 TSL 1 (best) BASIC12.35□□□□□ -0.43
COL6A5A8TX70 C14orf28-201ENST00000325192 2915 ntAPPRIS P1 TSL 1 (best) BASIC12.35□□□□□ -0.43
COL6A5A8TX70 PPP1CA-201ENST00000312989 1389 ntTSL 1 (best) BASIC12.35□□□□□ -0.43
COL6A5A8TX70 CTSD-212ENST00000637815 2003 ntAPPRIS ALT2 TSL 5 BASIC12.35□□□□□ -0.43
COL6A5A8TX70 TMEM250-201ENST00000418388 2823 ntAPPRIS P1 TSL 1 (best) BASIC12.35□□□□□ -0.43
COL6A5A8TX70 SKOR1-203ENST00000554054 3620 ntAPPRIS ALT2 TSL 5 BASIC12.35□□□□□ -0.43
COL6A5A8TX70 KRT9-202ENST00000588431 1493 ntTSL 1 (best) BASIC12.35□□□□□ -0.43
COL6A5A8TX70 DTX2-211ENST00000446600 2281 ntTSL 2 BASIC12.35□□□□□ -0.43
COL6A5A8TX70 RBM45-201ENST00000286070 1785 ntAPPRIS P2 TSL 1 (best) BASIC12.35□□□□□ -0.43
COL6A5A8TX70 NFE2-202ENST00000435572 1762 ntAPPRIS P1 TSL 1 (best) BASIC12.35□□□□□ -0.43
COL6A5A8TX70 RAB3IP-207ENST00000483530 1755 ntTSL 1 (best) BASIC12.35□□□□□ -0.43
COL6A5A8TX70 ANKRD16-203ENST00000380094 2738 ntAPPRIS P1 TSL 2 BASIC12.35□□□□□ -0.43
COL6A5A8TX70 CELA3B-201ENST00000337107 897 ntAPPRIS P1 TSL 1 (best) BASIC12.35□□□□□ -0.43
COL6A5A8TX70 NSUN5P1-203ENST00000422386 972 ntTSL 1 (best) BASIC12.35□□□□□ -0.43
COL6A5A8TX70 MIR503HG-202ENST00000440570 760 ntTSL 1 (best) BASIC12.35□□□□□ -0.43
COL6A5A8TX70 FHIT-208ENST00000492590 1081 ntAPPRIS P1 TSL 1 (best) BASIC12.35□□□□□ -0.43
COL6A5A8TX70 RCE1-204ENST00000525356 1270 ntTSL 5 BASIC12.35□□□□□ -0.43
COL6A5A8TX70 LDLRAD4-208ENST00000586765 844 ntTSL 2 BASIC12.35□□□□□ -0.43
COL6A5A8TX70 AC138894.2-201ENST00000602838 371 ntBASIC12.35□□□□□ -0.43
COL6A5A8TX70 AC113189.4-201ENST00000575331 5553 ntTSL 1 (best) BASIC12.35□□□□□ -0.43
COL6A5A8TX70 ANXA6-202ENST00000377751 1430 ntTSL 2 BASIC12.35□□□□□ -0.43
COL6A5A8TX70 DOLPP1-203ENST00000406974 2037 ntTSL 2 BASIC12.35□□□□□ -0.43
COL6A5A8TX70 HMGA1-205ENST00000447654 2159 ntAPPRIS P4 TSL 1 (best) BASIC12.35□□□□□ -0.43
COL6A5A8TX70 AADAT-208ENST00000515480 2193 ntAPPRIS P3 TSL 1 (best) BASIC12.35□□□□□ -0.43
COL6A5A8TX70 ATPAF1-214ENST00000576409 4158 ntAPPRIS P1 TSL 1 (best) BASIC12.35□□□□□ -0.43
COL6A5A8TX70 RNF7-201ENST00000273480 2763 ntAPPRIS P1 TSL 1 (best) BASIC12.35□□□□□ -0.43
COL6A5A8TX70 KAAG1-201ENST00000274766 1382 ntAPPRIS P1 BASIC12.35□□□□□ -0.43
COL6A5A8TX70 IDUA-210ENST00000514224 2130 ntTSL 2 BASIC12.34□□□□□ -0.43
COL6A5A8TX70 SLC29A2-201ENST00000311161 2262 ntTSL 1 (best) BASIC12.34□□□□□ -0.43
COL6A5A8TX70 RMDN3-202ENST00000338376 2251 ntAPPRIS P1 TSL 1 (best) BASIC12.34□□□□□ -0.43
COL6A5A8TX70 CCDC110-209ENST00000510617 2592 ntAPPRIS ALT2 TSL 5 BASIC12.34□□□□□ -0.43
COL6A5A8TX70 BAZ1B-202ENST00000404251 5428 ntAPPRIS P1 TSL 2 BASIC12.34□□□□□ -0.43
COL6A5A8TX70 ZNF302-206ENST00000505242 2849 ntAPPRIS P3 TSL 1 (best) BASIC12.34□□□□□ -0.43
COL6A5A8TX70 PEPD-202ENST00000397032 1754 ntTSL 2 BASIC12.34□□□□□ -0.43
COL6A5A8TX70 HSPA8-224ENST00000534624 2463 ntAPPRIS P1 TSL 1 (best) BASIC12.34□□□□□ -0.43
COL6A5A8TX70 GAS2L1-210ENST00000621062 2483 ntAPPRIS P1 TSL 1 (best) BASIC12.34□□□□□ -0.43
COL6A5A8TX70 LINC00574-201ENST00000420557 2318 ntTSL 2 BASIC12.34□□□□□ -0.43
COL6A5A8TX70 CHAD-201ENST00000258969 1739 ntAPPRIS P1 TSL 1 (best) BASIC12.34□□□□□ -0.43
COL6A5A8TX70 EIF4A3-201ENST00000269349 1734 ntAPPRIS P1 TSL 1 (best) BASIC12.34□□□□□ -0.43
COL6A5A8TX70 FBXW9-201ENST00000393261 1738 ntAPPRIS P1 TSL 1 (best) BASIC12.34□□□□□ -0.43
COL6A5A8TX70 AC026688.2-201ENST00000518984 1734 ntTSL 3 BASIC12.34□□□□□ -0.43
COL6A5A8TX70 NPTX2-201ENST00000265634 2700 ntAPPRIS P1 TSL 1 (best) BASIC12.34□□□□□ -0.43
COL6A5A8TX70 PRMT5-201ENST00000216350 2271 ntTSL 2 BASIC12.34□□□□□ -0.43
COL6A5A8TX70 SPAG16-204ENST00000413312 2258 ntTSL 5 BASIC12.34□□□□□ -0.43
COL6A5A8TX70 MAX-201ENST00000246163 897 ntTSL 1 (best) BASIC12.34□□□□□ -0.43
COL6A5A8TX70 NOL4L-202ENST00000326071 701 ntTSL 1 (best) BASIC12.34□□□□□ -0.43
COL6A5A8TX70 SPOP-201ENST00000347630 2965 ntAPPRIS P1 TSL 5 BASIC12.34□□□□□ -0.43
COL6A5A8TX70 FAM153B-214ENST00000512862 1071 ntAPPRIS ALT2 TSL 2 BASIC12.34□□□□□ -0.43
COL6A5A8TX70 AL135838.1-202ENST00000556411 441 ntTSL 2 BASIC12.34□□□□□ -0.43
COL6A5A8TX70 GNG2-213ENST00000556766 2125 ntAPPRIS P1 TSL 1 (best) BASIC12.34□□□□□ -0.43
COL6A5A8TX70 AC023824.4-202ENST00000569557 849 ntTSL 3 BASIC12.34□□□□□ -0.43
COL6A5A8TX70 AC008537.4-201ENST00000595728 1103 ntTSL 5 BASIC12.34□□□□□ -0.43
COL6A5A8TX70 HDAC10-202ENST00000349505 1950 ntTSL 1 (best) BASIC12.34□□□□□ -0.43
COL6A5A8TX70 OVOL1-203ENST00000532448 1774 ntTSL 1 (best) BASIC12.34□□□□□ -0.43
COL6A5A8TX70 ASB6-202ENST00000277459 2180 ntTSL 1 (best) BASIC12.34□□□□□ -0.43
COL6A5A8TX70 TRIP10-201ENST00000313244 2153 ntTSL 1 (best) BASIC12.34□□□□□ -0.43
COL6A5A8TX70 LRIG1-201ENST00000273261 5273 ntAPPRIS P1 TSL 1 (best) BASIC12.34□□□□□ -0.43
COL6A5A8TX70 CSNK2A1-203ENST00000400217 1451 ntTSL 2 BASIC12.34□□□□□ -0.43
COL6A5A8TX70 HIGD1A-202ENST00000418900 1322 ntAPPRIS P1 TSL 2 BASIC12.34□□□□□ -0.43
COL6A5A8TX70 COMMD5-203ENST00000450361 1573 ntAPPRIS P1 TSL 1 (best) BASIC12.34□□□□□ -0.43
COL6A5A8TX70 KRT8P39-201ENST00000396270 1433 ntBASIC12.34□□□□□ -0.43
COL6A5A8TX70 TMEM155-201ENST00000337677 2313 ntAPPRIS P2 TSL 1 (best) BASIC12.34□□□□□ -0.43
COL6A5A8TX70 MGME1-203ENST00000377710 2336 ntAPPRIS P1 TSL 1 (best) BASIC12.34□□□□□ -0.43
COL6A5A8TX70 MZF1-206ENST00000599369 2587 ntAPPRIS P1 TSL 1 (best) BASIC12.34□□□□□ -0.43
COL6A5A8TX70 FXYD6-204ENST00000526014 2171 ntAPPRIS P2 TSL 1 (best) BASIC12.34□□□□□ -0.43
COL6A5A8TX70 RAB41-201ENST00000276066 1071 ntAPPRIS P2 TSL 1 (best) BASIC12.34□□□□□ -0.43
COL6A5A8TX70 RAB41-202ENST00000374473 1074 ntAPPRIS ALT2 TSL 5 BASIC12.34□□□□□ -0.43
COL6A5A8TX70 CALCA-203ENST00000396372 581 ntTSL 1 (best) BASIC12.34□□□□□ -0.43
COL6A5A8TX70 RPS9P1-201ENST00000419943 583 ntBASIC12.34□□□□□ -0.43
COL6A5A8TX70 AC006335.1-201ENST00000445200 547 ntBASIC12.34□□□□□ -0.43
COL6A5A8TX70 Metazoa_SRP.100-201ENST00000447610 282 ntBASIC12.34□□□□□ -0.43
COL6A5A8TX70 AC097103.2-206ENST00000514729 588 ntTSL 4 BASIC12.34□□□□□ -0.43
COL6A5A8TX70 AHNAK-205ENST00000530124 701 ntAPPRIS ALT2 TSL 3 BASIC12.34□□□□□ -0.43
COL6A5A8TX70 MAP1LC3B2-202ENST00000556529 660 ntAPPRIS P1 TSL 3 BASIC12.34□□□□□ -0.43
COL6A5A8TX70 UPF3AP2-202ENST00000578315 730 ntTSL 5 BASIC12.34□□□□□ -0.43
COL6A5A8TX70 ACTRT3-201ENST00000330368 2005 ntAPPRIS P1 TSL 1 (best) BASIC12.34□□□□□ -0.43
Retrieved 100 of 98,524 protein–RNA pairs in 73.3 ms