Protein–RNA interactions for Protein: Q99626

CDX2, Homeobox protein CDX-2, humanhuman

Predicted RBP Predictions only

Length 313 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDX2Q99626 MFGE8-201ENST00000268150 1937 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
CDX2Q99626 BCAM-201ENST00000270233 2402 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
CDX2Q99626 SKOR1-204ENST00000554240 3597 ntAPPRIS ALT2 TSL 5 BASIC16.68■□□□□ 0.26
CDX2Q99626 HIGD1A-202ENST00000418900 1322 ntAPPRIS P1 TSL 2 BASIC16.68■□□□□ 0.26
CDX2Q99626 SMARCC1-201ENST00000254480 6375 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
CDX2Q99626 REPIN1-203ENST00000444957 2969 ntAPPRIS P3 TSL 1 (best) BASIC16.68■□□□□ 0.26
CDX2Q99626 NKX6-1-201ENST00000295886 2628 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
CDX2Q99626 TNRC18-202ENST00000399434 1459 ntTSL 2 BASIC16.67■□□□□ 0.26
CDX2Q99626 UBC-201ENST00000339647 2688 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
CDX2Q99626 NOL4L-210ENST00000616976 1376 ntTSL 5 BASIC16.67■□□□□ 0.26
CDX2Q99626 RANBP10-201ENST00000317506 5341 ntAPPRIS P2 TSL 1 (best) BASIC16.67■□□□□ 0.26
CDX2Q99626 SLC17A3-202ENST00000360657 1750 ntTSL 2 BASIC16.67■□□□□ 0.26
CDX2Q99626 RANBP10-209ENST00000630626 5305 ntAPPRIS ALT2 TSL 5 BASIC16.67■□□□□ 0.26
CDX2Q99626 C6orf52-201ENST00000259983 619 ntAPPRIS P2 TSL 5 BASIC16.67■□□□□ 0.26
CDX2Q99626 ODF4-201ENST00000328248 1156 ntAPPRIS P3 TSL 1 (best) BASIC16.67■□□□□ 0.26
CDX2Q99626 UBL4A-201ENST00000369653 711 ntTSL 3 BASIC16.67■□□□□ 0.26
CDX2Q99626 GABARAPL2-201ENST00000037243 1002 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
CDX2Q99626 TISP43-201ENST00000409793 538 ntTSL 4 BASIC16.67■□□□□ 0.26
CDX2Q99626 LINC01273-201ENST00000411453 685 ntTSL 2 BASIC16.67■□□□□ 0.26
CDX2Q99626 RPSAP31-201ENST00000416648 895 ntBASIC16.67■□□□□ 0.26
CDX2Q99626 AC079178.1-201ENST00000420915 656 ntBASIC16.67■□□□□ 0.26
CDX2Q99626 AL160290.2-202ENST00000448671 574 ntTSL 3 BASIC16.67■□□□□ 0.26
CDX2Q99626 OSMR-AS1-202ENST00000512519 837 ntTSL 2 BASIC16.67■□□□□ 0.26
CDX2Q99626 CENPX-208ENST00000584347 799 ntTSL 2 BASIC16.67■□□□□ 0.26
CDX2Q99626 KLK11-210ENST00000600362 759 ntTSL 3 BASIC16.67■□□□□ 0.26
CDX2Q99626 AC006064.4-201ENST00000602946 422 ntTSL 2 BASIC16.67■□□□□ 0.26
CDX2Q99626 ZCCHC4-206ENST00000612982 938 ntTSL 5 BASIC16.67■□□□□ 0.26
CDX2Q99626 AC244157.2-201ENST00000616239 1006 ntBASIC16.67■□□□□ 0.26
CDX2Q99626 HIST1H4A-201ENST00000617569 312 ntAPPRIS P1 BASIC16.67■□□□□ 0.26
CDX2Q99626 CD8A-202ENST00000352580 1977 ntAPPRIS ALT2 TSL 2 BASIC16.67■□□□□ 0.26
CDX2Q99626 TOM1L1-204ENST00000570371 2442 ntTSL 5 BASIC16.67■□□□□ 0.26
CDX2Q99626 PCDHGB3-202ENST00000618934 2445 ntAPPRIS P1 BASIC16.67■□□□□ 0.26
CDX2Q99626 HECTD2-204ENST00000446394 4939 ntTSL 2 BASIC16.67■□□□□ 0.26
CDX2Q99626 NRXN1-220ENST00000611589 1857 ntTSL 5 BASIC16.67■□□□□ 0.26
CDX2Q99626 NTF3-202ENST00000423158 1336 ntAPPRIS ALT1 TSL 1 (best) BASIC16.67■□□□□ 0.26
CDX2Q99626 ZNF57-201ENST00000306908 2003 ntAPPRIS P2 TSL 1 (best) BASIC16.67■□□□□ 0.26
CDX2Q99626 PODXL-201ENST00000322985 2011 ntAPPRIS ALT2 TSL 1 (best) BASIC16.67■□□□□ 0.26
CDX2Q99626 ZNF57-205ENST00000614108 2002 ntAPPRIS ALT2 TSL 5 BASIC16.67■□□□□ 0.26
CDX2Q99626 DMAC2-204ENST00000438807 1454 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
CDX2Q99626 LAT-203ENST00000395456 1616 ntAPPRIS ALT2 TSL 1 (best) BASIC16.67■□□□□ 0.26
CDX2Q99626 SNAP47-213ENST00000617596 1905 ntAPPRIS ALT2 TSL 1 (best) BASIC16.66■□□□□ 0.26
CDX2Q99626 SGCZ-201ENST00000382080 2234 ntAPPRIS P1 TSL 5 BASIC16.66■□□□□ 0.26
CDX2Q99626 APEH-202ENST00000438011 2249 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
CDX2Q99626 MLLT1-201ENST00000252674 4507 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
CDX2Q99626 KIF1BP-201ENST00000361983 2544 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
CDX2Q99626 SNHG1-213ENST00000540725 1374 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
CDX2Q99626 CHRDL1-205ENST00000482160 1537 ntTSL 2 BASIC16.66■□□□□ 0.26
CDX2Q99626 GPS1-201ENST00000306823 1842 ntAPPRIS P3 TSL 1 (best) BASIC16.66■□□□□ 0.26
CDX2Q99626 TMEM51-202ENST00000376014 1843 ntAPPRIS P1 TSL 2 BASIC16.66■□□□□ 0.26
CDX2Q99626 C2orf54-203ENST00000402775 1958 ntAPPRIS ALT2 TSL 2 BASIC16.66■□□□□ 0.26
CDX2Q99626 PDCD1-201ENST00000334409 2114 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
CDX2Q99626 TRABD-202ENST00000380909 2272 ntAPPRIS P3 TSL 5 BASIC16.66■□□□□ 0.26
CDX2Q99626 TRMT1-203ENST00000437766 2263 ntAPPRIS P3 TSL 1 (best) BASIC16.66■□□□□ 0.26
CDX2Q99626 TPCN2-208ENST00000637342 2856 ntTSL 5 BASIC16.66■□□□□ 0.26
CDX2Q99626 BATF-201ENST00000286639 980 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
CDX2Q99626 SULT2B1-202ENST00000323090 1447 ntAPPRIS ALT2 TSL 1 (best) BASIC16.66■□□□□ 0.26
CDX2Q99626 FGFR2-204ENST00000356226 3547 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
CDX2Q99626 CNR1-201ENST00000362094 1252 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
CDX2Q99626 GEMIN7-202ENST00000391951 716 ntAPPRIS P1 TSL 2 BASIC16.66■□□□□ 0.26
CDX2Q99626 AC073316.1-202ENST00000402115 988 ntTSL 5 BASIC16.66■□□□□ 0.26
CDX2Q99626 CHID1-202ENST00000429789 1289 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
CDX2Q99626 KCNQ1DN-201ENST00000441418 1093 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
CDX2Q99626 IQCF3-203ENST00000444293 450 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
CDX2Q99626 METTL6-204ENST00000450816 1221 ntTSL 2 BASIC16.66■□□□□ 0.26
CDX2Q99626 DRD5P1-201ENST00000456605 1438 ntBASIC16.66■□□□□ 0.26
CDX2Q99626 LINC02046-201ENST00000469812 378 ntTSL 3 BASIC16.66■□□□□ 0.26
CDX2Q99626 SZRD1-203ENST00000471507 892 ntAPPRIS ALT1 TSL 2 BASIC16.66■□□□□ 0.26
CDX2Q99626 RAMP3-202ENST00000481345 559 ntAPPRIS P2 TSL 4 BASIC16.66■□□□□ 0.26
CDX2Q99626 SLED1-202ENST00000512051 380 ntBASIC16.66■□□□□ 0.26
CDX2Q99626 RNF41-210ENST00000552244 716 ntTSL 3 BASIC16.66■□□□□ 0.26
CDX2Q99626 FKBP11-212ENST00000552878 1052 ntAPPRIS ALT2 TSL 2 BASIC16.66■□□□□ 0.26
CDX2Q99626 AL161670.2-201ENST00000557650 1227 ntBASIC16.66■□□□□ 0.26
CDX2Q99626 AL691432.1-201ENST00000596308 1422 ntBASIC16.66■□□□□ 0.26
CDX2Q99626 AC011462.2-201ENST00000598887 344 ntTSL 5 BASIC16.66■□□□□ 0.26
CDX2Q99626 AC002985.2-201ENST00000601106 957 ntTSL 4 BASIC16.66■□□□□ 0.26
CDX2Q99626 AC100757.4-201ENST00000626934 759 ntBASIC16.66■□□□□ 0.26
CDX2Q99626 NPAS3-202ENST00000356141 2802 ntAPPRIS ALT2 TSL 1 (best) BASIC16.66■□□□□ 0.26
CDX2Q99626 SH3YL1-206ENST00000405430 2064 ntAPPRIS P1 TSL 5 BASIC16.66■□□□□ 0.26
CDX2Q99626 TBP-202ENST00000392092 1903 ntAPPRIS P3 TSL 1 (best) BASIC16.66■□□□□ 0.26
CDX2Q99626 PCGF1-201ENST00000233630 1792 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
CDX2Q99626 PRR19-204ENST00000598490 1641 ntAPPRIS ALT2 TSL 1 (best) BASIC16.66■□□□□ 0.26
CDX2Q99626 RIC8B-213ENST00000638198 1611 ntTSL 5 BASIC16.66■□□□□ 0.26
CDX2Q99626 KRT8P35-201ENST00000483942 1338 ntBASIC16.66■□□□□ 0.26
CDX2Q99626 CENPBD1P1-204ENST00000487264 1308 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
CDX2Q99626 CD248-201ENST00000311330 2558 ntAPPRIS P1 BASIC16.66■□□□□ 0.26
CDX2Q99626 PIP4K2A-202ENST00000376573 3802 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
CDX2Q99626 RTEL1-204ENST00000370003 2273 ntTSL 2 BASIC16.66■□□□□ 0.26
CDX2Q99626 TMEM140-201ENST00000275767 1997 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
CDX2Q99626 TSR1-201ENST00000301364 5188 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
CDX2Q99626 KRT35-202ENST00000393989 1670 ntAPPRIS P1 TSL 5 BASIC16.65■□□□□ 0.26
CDX2Q99626 PACS1-209ENST00000529757 1688 ntAPPRIS ALT2 TSL 1 (best) BASIC16.65■□□□□ 0.26
CDX2Q99626 RAD1-208ENST00000628399 1678 ntTSL 3 BASIC16.65■□□□□ 0.26
CDX2Q99626 IMP3-201ENST00000314852 2028 ntAPPRIS P1 TSL 2 BASIC16.65■□□□□ 0.26
CDX2Q99626 STK32C-204ENST00000368622 2010 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
CDX2Q99626 CTSD-212ENST00000637815 2003 ntAPPRIS ALT2 TSL 5 BASIC16.65■□□□□ 0.26
CDX2Q99626 NR1D2-201ENST00000312521 5258 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
CDX2Q99626 CXXC1P1-201ENST00000483225 1897 ntTSL 2 BASIC16.65■□□□□ 0.26
CDX2Q99626 PIGC-201ENST00000344529 1447 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
CDX2Q99626 CHAT-212ENST00000640822 1412 ntTSL 5 BASIC16.65■□□□□ 0.26
CDX2Q99626 OTUB1-202ENST00000422031 2297 ntAPPRIS ALT1 TSL 5 BASIC16.65■□□□□ 0.26
Retrieved 100 of 98,524 protein–RNA pairs in 54.4 ms