RNA–Protein interactions for RNA: ENST00000311330.3

CD248-201, Transcript of CD248 molecule, humanhuman

APPRIS P1 BASIC

Gene CD248, Length 2,558 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD248-201ENST00000311330 NISCHQ9Y2I1 1504 aa39.44■■■■□ 3.9
CD248-201ENST00000311330 CCDC180Q9P1Z9 1646 aa33.73■■■□□ 2.99
CD248-201ENST00000311330 SHROOM4Q9ULL8 1493 aa33.33■■■□□ 2.93
CD248-201ENST00000311330 ZCCHC6Q5VYS8 1495 aaKnown RBP33.26■■■□□ 2.91
CD248-201ENST00000311330 DCAF8L2P0C7V8 631 aa32.9■■■□□ 2.86
CD248-201ENST00000311330 SUPT5HO00267 1087 aaKnown RBP32.46■■■□□ 2.79
CD248-201ENST00000311330 DCAF1Q9Y4B6 1507 aa32.34■■■□□ 2.77
CD248-201ENST00000311330 ABCC9O60706 1549 aa31.71■■■□□ 2.67
CD248-201ENST00000311330 SCRIBQ14160 1630 aa31.58■■■□□ 2.65
CD248-201ENST00000311330 MYO15BQ96JP2 1530 aa31.57■■■□□ 2.64
CD248-201ENST00000311330 CHIC1Q5VXU3 224 aa31.31■■■□□ 2.6
CD248-201ENST00000311330 NACADO15069 1562 aa31.31■■■□□ 2.6
CD248-201ENST00000311330 RSF1Q96T23 1441 aaPredicted RBP31.04■■■□□ 2.56
CD248-201ENST00000311330 RB1CC1Q8TDY2 1594 aa30.9■■■□□ 2.54
CD248-201ENST00000311330 CECR2Q9BXF3 1484 aa30.83■■■□□ 2.53
CD248-201ENST00000311330 MROH2BQ7Z745 1585 aa30.66■■■□□ 2.5
CD248-201ENST00000311330 WIZO95785 1651 aa30.47■■■□□ 2.47
CD248-201ENST00000311330 UNC13AQ9UPW8 1703 aa30.44■■■□□ 2.46
CD248-201ENST00000311330 LOC105371045A0A1W2PR82 267 aa30.39■■■□□ 2.46
CD248-201ENST00000311330 BAZ1AQ9NRL2 1556 aaPredicted RBP30.32■■■□□ 2.44
CD248-201ENST00000311330 TRIM41Q8WV44 630 aa30.25■■■□□ 2.43
CD248-201ENST00000311330 PABPN1Q86U42 306 aaKnown RBP eCLIP30.25■■■□□ 2.43
CD248-201ENST00000311330 SMARCA4P51532 1647 aa30.14■■■□□ 2.41
CD248-201ENST00000311330 BICRAQ9NZM4 1560 aa30.1■■■□□ 2.41
CD248-201ENST00000311330 FAM9AQ8IZU1 332 aaPredicted RBP30.03■■■□□ 2.4
CD248-201ENST00000311330 TOP2AP11388 1531 aaKnown RBP29.96■■■□□ 2.39
CD248-201ENST00000311330 PCGF6Q9BYE7 350 aa29.85■■■□□ 2.37
CD248-201ENST00000311330 CCDC88BA6NC98 1476 aa29.85■■■□□ 2.37
CD248-201ENST00000311330 EIF4G1Q04637 1599 aaKnown RBP29.81■■■□□ 2.36
CD248-201ENST00000311330 EHMT2Q96KQ7 1210 aa29.8■■■□□ 2.36
CD248-201ENST00000311330 SMARCA2P51531 1590 aa29.79■■■□□ 2.36
CD248-201ENST00000311330 ABCC8Q09428 1581 aa29.63■■■□□ 2.33
CD248-201ENST00000311330 PEG3Q9GZU2 1588 aa29.56■■■□□ 2.32
CD248-201ENST00000311330 ATAD2BQ9ULI0 1458 aa29.49■■■□□ 2.31
CD248-201ENST00000311330 HRCP23327 699 aa29.49■■■□□ 2.31
CD248-201ENST00000311330 BAZ1BQ9UIG0 1483 aaKnown RBP29.38■■■□□ 2.29
CD248-201ENST00000311330 TRIM26Q12899 539 aaPredicted RBP29.37■■■□□ 2.29
CD248-201ENST00000311330 SOGA1O94964 1423 aa29.26■■■□□ 2.27
CD248-201ENST00000311330 WRNQ14191 1432 aaPredicted RBP eCLIP29.17■■■□□ 2.26
CD248-201ENST00000311330 RUSC2Q8N2Y8 1516 aa29.15■■■□□ 2.26
CD248-201ENST00000311330 PPARGC1BQ86YN6 1023 aaKnown RBP29.08■■■□□ 2.24
CD248-201ENST00000311330 SYNJ1O43426 1573 aa29.05■■■□□ 2.24
CD248-201ENST00000311330 CSRNP3Q8WYN3 585 aa29.04■■■□□ 2.24
CD248-201ENST00000311330 NCAPD3P42695 1498 aa28.99■■■□□ 2.23
CD248-201ENST00000311330 EEA1Q15075 1411 aa28.97■■■□□ 2.23
CD248-201ENST00000311330 HMGXB3Q12766 1538 aa28.93■■■□□ 2.22
CD248-201ENST00000311330 UBTFP17480 764 aaKnown RBP28.9■■■□□ 2.22
CD248-201ENST00000311330 CEP162Q5TB80 1403 aa28.88■■■□□ 2.21
CD248-201ENST00000311330 TNIKQ9UKE5 1360 aa28.85■■■□□ 2.21
CD248-201ENST00000311330 GOLGA3Q08378 1498 aa28.77■■■□□ 2.2
CD248-201ENST00000311330 TOP2BQ02880 1626 aa28.71■■■□□ 2.19
CD248-201ENST00000311330 TTBK1Q5TCY1 1321 aaPredicted RBP28.7■■■□□ 2.19
CD248-201ENST00000311330 CEP164Q9UPV0 1460 aa28.66■■■□□ 2.18
CD248-201ENST00000311330 CFTRP13569 1480 aa28.63■■■□□ 2.17
CD248-201ENST00000311330 BIVM-ERCC5R4GMW8 1640 aa28.61■■■□□ 2.17
CD248-201ENST00000311330 KIF21BO75037 1637 aa28.61■■■□□ 2.17
CD248-201ENST00000311330 CUX1P39880 1505 aa28.57■■■□□ 2.16
CD248-201ENST00000311330 RAPGEF2Q9Y4G8 1499 aa28.56■■■□□ 2.16
CD248-201ENST00000311330 CC2D2AQ9P2K1 1620 aa28.53■■■□□ 2.16
CD248-201ENST00000311330 RANGAP1P46060 587 aaPredicted RBP28.49■■■□□ 2.15
CD248-201ENST00000311330 ZEB1P37275 1124 aaPredicted RBP28.46■■■□□ 2.15
CD248-201ENST00000311330 CLIP1P30622 1438 aa28.45■■■□□ 2.14
CD248-201ENST00000311330 CADPSQ9ULU8 1353 aa28.41■■■□□ 2.14
CD248-201ENST00000311330 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP28.35■■■□□ 2.13
CD248-201ENST00000311330 PRDM2Q13029 1718 aa28.33■■■□□ 2.13
CD248-201ENST00000311330 PRXQ9BXM0 1461 aa28.31■■■□□ 2.12
CD248-201ENST00000311330 KIF27Q86VH2 1401 aa28.3■■■□□ 2.12
CD248-201ENST00000311330 VPS8Q8N3P4 1428 aa28.24■■■□□ 2.11
CD248-201ENST00000311330 ERICH3Q5RHP9 1530 aa28.23■■■□□ 2.11
CD248-201ENST00000311330 CCER1Q8TC90 406 aaPredicted RBP28.22■■■□□ 2.11
CD248-201ENST00000311330 CUX2O14529 1486 aa28.16■■■□□ 2.1
CD248-201ENST00000311330 FGD5Q6ZNL6 1462 aa28.14■■■□□ 2.09
CD248-201ENST00000311330 FANCD2Q9BXW9 1451 aa28.14■■■□□ 2.09
CD248-201ENST00000311330 NESP48681 1621 aa28.12■■■□□ 2.09
CD248-201ENST00000311330 APLP2Q06481 763 aa28.11■■■□□ 2.09
CD248-201ENST00000311330 IGF1RP08069 1367 aa28.07■■■□□ 2.08
CD248-201ENST00000311330 ARAP1Q96P48 1450 aa28.04■■■□□ 2.08
CD248-201ENST00000311330 DNAJC5BQ9UF47 199 aa28.02■■■□□ 2.08
CD248-201ENST00000311330 HNRNPUL2Q1KMD3 747 aaKnown RBP27.99■■■□□ 2.07
CD248-201ENST00000311330 CARMIL1Q5VZK9 1371 aa27.93■■■□□ 2.06
CD248-201ENST00000311330 RAD54L2Q9Y4B4 1467 aa27.93■■■□□ 2.06
CD248-201ENST00000311330 DNMBPQ6XZF7 1577 aa27.91■■■□□ 2.06
CD248-201ENST00000311330 TOPBP1Q92547 1522 aa27.9■■■□□ 2.06
CD248-201ENST00000311330 ARHGAP35Q9NRY4 1499 aa27.89■■■□□ 2.06
CD248-201ENST00000311330 KANK4Q5T7N3 995 aaPredicted RBP27.87■■■□□ 2.05
CD248-201ENST00000311330 POLA1P09884 1462 aaPredicted RBP27.86■■■□□ 2.05
CD248-201ENST00000311330 LAMC3Q9Y6N6 1575 aa27.8■■■□□ 2.04
CD248-201ENST00000311330 URB2Q14146 1524 aaKnown RBP27.77■■■□□ 2.04
CD248-201ENST00000311330 ABCA10Q8WWZ4 1543 aa27.77■■■□□ 2.04
CD248-201ENST00000311330 P3H3Q8IVL6 736 aa27.67■■■□□ 2.02
CD248-201ENST00000311330 PDS5BQ9NTI5 1447 aa27.66■■■□□ 2.02
CD248-201ENST00000311330 TDRD9Q8NDG6 1382 aaKnown RBP27.63■■■□□ 2.01
CD248-201ENST00000311330 KIF21AQ7Z4S6 1674 aa27.6■■■□□ 2.01
CD248-201ENST00000311330 WDR97A6NE52 1622 aa27.54■■■□□ 2
CD248-201ENST00000311330 CUL7Q14999 1698 aa27.53■■■□□ 2
CD248-201ENST00000311330 ATP1B4Q9UN42 357 aaPredicted RBP27.51■■□□□ 1.99
CD248-201ENST00000311330 RRBP1Q9P2E9 1410 aaKnown RBP27.5■■□□□ 1.99
CD248-201ENST00000311330 FHOD3Q2V2M9 1422 aa27.49■■□□□ 1.99
CD248-201ENST00000311330 TIAM1Q13009 1591 aa27.48■■□□□ 1.99
CD248-201ENST00000311330 GAPVD1Q14C86 1478 aa27.47■■□□□ 1.99
Retrieved 100 of 20,778 RNA–protein pairs in 9.5 ms