Protein–RNA interactions for Protein: P33552

CKS2, Cyclin-dependent kinases regulatory subunit 2, humanhuman

Predictions only

Length 79 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CKS2P33552 EPHX1-206ENST00000614058 1789 ntAPPRIS P1 TSL 1 (best) BASIC12.04□□□□□ -0.48
CKS2P33552 VAT1-201ENST00000355653 2734 ntAPPRIS P1 TSL 1 (best) BASIC12.04□□□□□ -0.48
CKS2P33552 RCOR3-203ENST00000419091 2041 ntAPPRIS P1 TSL 2 BASIC12.04□□□□□ -0.48
CKS2P33552 LY6E-203ENST00000517503 1335 ntAPPRIS ALT2 TSL 3 BASIC12.04□□□□□ -0.48
CKS2P33552 RPLP0-219ENST00000551150 1344 ntAPPRIS P1 TSL 1 (best) BASIC12.04□□□□□ -0.48
CKS2P33552 SIT1-204ENST00000618781 1317 ntAPPRIS ALT2 TSL 5 BASIC12.04□□□□□ -0.48
CKS2P33552 NFIC-210ENST00000590282 1558 ntTSL 2 BASIC12.04□□□□□ -0.48
CKS2P33552 GAK-214ENST00000511163 4280 ntTSL 1 (best) BASIC12.04□□□□□ -0.48
CKS2P33552 OSBPL8-201ENST00000261183 7239 ntAPPRIS P3 TSL 1 (best) BASIC12.04□□□□□ -0.48
CKS2P33552 OSBPL8-218ENST00000611266 7239 ntAPPRIS ALT1 TSL 1 (best) BASIC12.04□□□□□ -0.48
CKS2P33552 MTMR9-201ENST00000221086 7481 ntAPPRIS P1 TSL 1 (best) BASIC12.04□□□□□ -0.48
CKS2P33552 PLIN4-201ENST00000301286 6353 ntAPPRIS P2 TSL 5 BASIC12.04□□□□□ -0.48
CKS2P33552 SNX18-202ENST00000343017 3140 ntBASIC12.04□□□□□ -0.48
CKS2P33552 PATZ1-203ENST00000351933 3638 ntTSL 1 (best) BASIC12.04□□□□□ -0.48
CKS2P33552 CCDC183-AS1-201ENST00000414656 2386 ntTSL 2 BASIC12.04□□□□□ -0.48
CKS2P33552 AL109954.1-202ENST00000564051 2148 ntBASIC12.04□□□□□ -0.48
CKS2P33552 DAAM2-201ENST00000274867 6194 ntAPPRIS ALT1 TSL 1 (best) BASIC12.04□□□□□ -0.48
CKS2P33552 STRC-205ENST00000450892 5680 ntAPPRIS P2 TSL 5 BASIC12.04□□□□□ -0.48
CKS2P33552 ANKH-201ENST00000284268 8203 ntAPPRIS P1 TSL 1 (best) BASIC12.04□□□□□ -0.48
CKS2P33552 AL928970.1-201ENST00000422679 2923 ntTSL 5 BASIC12.04□□□□□ -0.48
CKS2P33552 KRT85-201ENST00000257901 2447 ntAPPRIS P1 TSL 1 (best) BASIC12.03□□□□□ -0.48
CKS2P33552 MPP3-201ENST00000398389 2182 ntAPPRIS P1 TSL 1 (best) BASIC12.03□□□□□ -0.48
CKS2P33552 LLGL2-201ENST00000167462 3480 ntTSL 1 (best) BASIC12.03□□□□□ -0.48
CKS2P33552 JPH4-205ENST00000622501 3489 ntAPPRIS ALT1 TSL 5 BASIC12.03□□□□□ -0.48
CKS2P33552 VLDLR-202ENST00000382099 3240 ntAPPRIS ALT1 TSL 1 (best) BASIC12.03□□□□□ -0.48
CKS2P33552 KREMEN1-201ENST00000327813 2719 ntAPPRIS P3 TSL 2 BASIC12.03□□□□□ -0.48
CKS2P33552 HNF1B-207ENST00000621123 1971 ntTSL 1 (best) BASIC12.03□□□□□ -0.48
CKS2P33552 LRFN1-201ENST00000248668 3381 ntAPPRIS P1 TSL 1 (best) BASIC12.03□□□□□ -0.48
CKS2P33552 FAM227B-201ENST00000299338 2008 ntAPPRIS P3 TSL 2 BASIC12.03□□□□□ -0.48
CKS2P33552 KDR-201ENST00000263923 5831 ntAPPRIS P1 TSL 1 (best) BASIC12.03□□□□□ -0.48
CKS2P33552 UVSSA-206ENST00000507531 2597 ntAPPRIS P2 TSL 1 (best) BASIC12.03□□□□□ -0.48
CKS2P33552 RBPJ-204ENST00000348160 1752 ntAPPRIS ALT1 TSL 1 (best) BASIC12.03□□□□□ -0.48
CKS2P33552 PBX1-215ENST00000559240 2866 ntTSL 5 BASIC12.03□□□□□ -0.48
CKS2P33552 UBC-205ENST00000536769 3745 ntAPPRIS P1 BASIC12.03□□□□□ -0.48
CKS2P33552 PI16-203ENST00000611814 2083 ntAPPRIS P1 TSL 5 BASIC12.03□□□□□ -0.48
CKS2P33552 GFAP-225ENST00000638281 2099 ntTSL 5 BASIC12.03□□□□□ -0.48
CKS2P33552 FOXP1-202ENST00000318789 7114 ntAPPRIS P3 TSL 1 (best) BASIC12.03□□□□□ -0.48
CKS2P33552 FOXP1-222ENST00000615603 7140 ntTSL 5 BASIC12.03□□□□□ -0.48
CKS2P33552 C11orf80-201ENST00000360962 1807 ntAPPRIS ALT2 TSL 5 BASIC12.03□□□□□ -0.48
CKS2P33552 AL355315.1-201ENST00000370649 1848 ntAPPRIS P1 TSL 2 BASIC12.03□□□□□ -0.48
CKS2P33552 WDR20-205ENST00000424963 2695 ntTSL 5 BASIC12.03□□□□□ -0.48
CKS2P33552 COPE-201ENST00000262812 1141 ntAPPRIS P1 TSL 1 (best) BASIC12.03□□□□□ -0.48
CKS2P33552 KCNK7-202ENST00000342202 1283 ntTSL 1 (best) BASIC12.03□□□□□ -0.48
CKS2P33552 COPE-203ENST00000351079 907 ntTSL 2 BASIC12.03□□□□□ -0.48
CKS2P33552 LCE4A-202ENST00000368777 672 ntAPPRIS P1 TSL 2 BASIC12.03□□□□□ -0.48
CKS2P33552 CXorf40A-202ENST00000393985 1148 ntAPPRIS P3 TSL 1 (best) BASIC12.03□□□□□ -0.48
CKS2P33552 MOBP-204ENST00000420739 940 ntAPPRIS P4 TSL 5 BASIC12.03□□□□□ -0.48
CKS2P33552 CD70-202ENST00000423145 881 ntTSL 2 BASIC12.03□□□□□ -0.48
CKS2P33552 AL954642.1-201ENST00000428088 538 ntTSL 3 BASIC12.03□□□□□ -0.48
CKS2P33552 PACRGL-218ENST00000507634 1142 ntTSL 5 BASIC12.03□□□□□ -0.48
CKS2P33552 OAF-202ENST00000531220 815 ntAPPRIS ALT2 TSL 3 BASIC12.03□□□□□ -0.48
CKS2P33552 MYL6-203ENST00000536128 1221 ntTSL 2 BASIC12.03□□□□□ -0.48
CKS2P33552 AC097641.1-201ENST00000580671 588 ntTSL 4 BASIC12.03□□□□□ -0.48
CKS2P33552 SNX21-213ENST00000614929 587 ntTSL 5 BASIC12.03□□□□□ -0.48
CKS2P33552 ZBTB11-AS1-201ENST00000609682 2743 ntBASIC12.03□□□□□ -0.48
CKS2P33552 DCHS1-201ENST00000299441 10765 ntAPPRIS P1 TSL 1 (best) BASIC12.03□□□□□ -0.48
CKS2P33552 FGFR1-202ENST00000335922 4157 ntTSL 1 (best) BASIC12.03□□□□□ -0.48
CKS2P33552 KRT12-201ENST00000251643 1867 ntAPPRIS P1 TSL 1 (best) BASIC12.03□□□□□ -0.48
CKS2P33552 SEPT11-209ENST00000510515 1886 ntTSL 2 BASIC12.03□□□□□ -0.48
CKS2P33552 AC020658.6-201ENST00000623564 1870 ntBASIC12.03□□□□□ -0.48
CKS2P33552 PRKD2-201ENST00000291281 3070 ntAPPRIS P3 TSL 1 (best) BASIC12.03□□□□□ -0.48
CKS2P33552 ARFIP2-204ENST00000445086 1300 ntTSL 2 BASIC12.03□□□□□ -0.48
CKS2P33552 EIF4A1-203ENST00000577269 1319 ntTSL 1 (best) BASIC12.03□□□□□ -0.48
CKS2P33552 TEX19-201ENST00000333437 1936 ntAPPRIS P1 TSL 1 (best) BASIC12.03□□□□□ -0.48
CKS2P33552 IQCF3-205ENST00000456080 1685 ntAPPRIS P1 TSL 2 BASIC12.03□□□□□ -0.48
CKS2P33552 PACS1-209ENST00000529757 1688 ntAPPRIS ALT2 TSL 1 (best) BASIC12.03□□□□□ -0.48
CKS2P33552 AC005264.1-201ENST00000587587 2319 ntTSL 2 BASIC12.03□□□□□ -0.48
CKS2P33552 GLUL-203ENST00000339526 3942 ntAPPRIS P1 TSL 1 (best) BASIC12.03□□□□□ -0.48
CKS2P33552 RHOXF1P3-203ENST00000640298 2668 ntTSL 5 BASIC12.03□□□□□ -0.48
CKS2P33552 NFKBIL1-201ENST00000376145 1401 ntTSL 1 (best) BASIC12.03□□□□□ -0.48
CKS2P33552 BRF1-203ENST00000379937 3314 ntTSL 1 (best) BASIC12.03□□□□□ -0.48
CKS2P33552 KRT8P39-201ENST00000396270 1433 ntBASIC12.03□□□□□ -0.48
CKS2P33552 THBS2-206ENST00000617924 5280 ntAPPRIS P1 TSL 1 (best) BASIC12.02□□□□□ -0.48
CKS2P33552 FBLN2-203ENST00000404922 4318 ntAPPRIS P4 TSL 5 BASIC12.02□□□□□ -0.48
CKS2P33552 SPATA20-201ENST00000006658 2719 ntTSL 1 (best) BASIC12.02□□□□□ -0.48
CKS2P33552 PHF14-215ENST00000634607 3407 ntAPPRIS P1 TSL 5 BASIC12.02□□□□□ -0.48
CKS2P33552 SLC25A38-201ENST00000273158 2123 ntAPPRIS P1 TSL 1 (best) BASIC12.02□□□□□ -0.48
CKS2P33552 CYB561A3-203ENST00000447532 1803 ntTSL 5 BASIC12.02□□□□□ -0.48
CKS2P33552 SERPINE2-202ENST00000409304 2161 ntAPPRIS ALT1 TSL 1 (best) BASIC12.02□□□□□ -0.48
CKS2P33552 SHISA2-201ENST00000319420 2860 ntAPPRIS P1 TSL 1 (best) BASIC12.02□□□□□ -0.48
CKS2P33552 SRPX-201ENST00000378533 1874 ntAPPRIS P3 TSL 1 (best) BASIC12.02□□□□□ -0.48
CKS2P33552 ABHD14B-201ENST00000315877 2236 ntTSL 5 BASIC12.02□□□□□ -0.48
CKS2P33552 PES1-202ENST00000354694 2295 ntAPPRIS P3 TSL 1 (best) BASIC12.02□□□□□ -0.49
CKS2P33552 CNKSR1-201ENST00000361530 2625 ntAPPRIS P3 TSL 1 (best) BASIC12.02□□□□□ -0.49
CKS2P33552 HS2ST1-202ENST00000370551 1585 ntTSL 1 (best) BASIC12.02□□□□□ -0.49
CKS2P33552 POLR1D-212ENST00000630983 1931 ntTSL 5 BASIC12.02□□□□□ -0.49
CKS2P33552 THEMIS2-202ENST00000373921 2687 ntAPPRIS P1 TSL 5 BASIC12.02□□□□□ -0.49
CKS2P33552 RSPH6A-202ENST00000597055 2306 ntAPPRIS ALT2 TSL 1 (best) BASIC12.02□□□□□ -0.49
CKS2P33552 PSMD13-212ENST00000532097 1991 ntAPPRIS P1 TSL 1 (best) BASIC12.02□□□□□ -0.49
CKS2P33552 NSUN5-202ENST00000310326 1602 ntAPPRIS ALT2 TSL 2 BASIC12.02□□□□□ -0.49
CKS2P33552 PDE9A-205ENST00000349112 1616 ntTSL 1 (best) BASIC12.02□□□□□ -0.49
CKS2P33552 ACOT7-204ENST00000377855 1614 ntAPPRIS P4 TSL 1 (best) BASIC12.02□□□□□ -0.49
CKS2P33552 ZSCAN10-209ENST00000576985 2739 ntAPPRIS P1 TSL 5 BASIC12.02□□□□□ -0.49
CKS2P33552 KLK12-201ENST00000250351 882 ntAPPRIS P4 TSL 5 BASIC12.02□□□□□ -0.49
CKS2P33552 KLK12-202ENST00000319590 1074 ntAPPRIS ALT2 TSL 5 BASIC12.02□□□□□ -0.49
CKS2P33552 UXT-202ENST00000335890 701 ntTSL 1 (best) BASIC12.02□□□□□ -0.49
CKS2P33552 INSIG1-202ENST00000342407 1127 ntTSL 2 BASIC12.02□□□□□ -0.49
CKS2P33552 NNAT-202ENST00000346199 1209 ntAPPRIS ALT1 TSL 1 (best) BASIC12.02□□□□□ -0.49
CKS2P33552 TMEM53-201ENST00000372235 890 ntTSL 2 BASIC12.02□□□□□ -0.49
CKS2P33552 GUCA2B-201ENST00000372581 597 ntAPPRIS P1 TSL 1 (best) BASIC12.02□□□□□ -0.49
Retrieved 100 of 98,524 protein–RNA pairs in 31.3 ms