Protein–RNA interactions for Protein: O15347

HMGB3, High mobility group protein B3, humanhuman

Known RBP Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3O15347 NIM1K-201ENST00000326035 2313 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
HMGB3O15347 KRAS-203ENST00000556131 1696 ntTSL 1 (best) BASIC13.2□□□□□ -0.3
HMGB3O15347 BMP1-203ENST00000354870 3989 ntTSL 5 BASIC13.2□□□□□ -0.3
HMGB3O15347 RGPD5-202ENST00000272454 2907 ntTSL 2 BASIC13.2□□□□□ -0.3
HMGB3O15347 RPRD1A-201ENST00000357384 1850 ntAPPRIS P1 TSL 5 BASIC13.2□□□□□ -0.3
HMGB3O15347 RAP1GDS1-203ENST00000380158 2085 ntTSL 1 (best) BASIC13.2□□□□□ -0.3
HMGB3O15347 AADAT-201ENST00000337664 2261 ntAPPRIS P3 TSL 1 (best) BASIC13.2□□□□□ -0.3
HMGB3O15347 TBK1-201ENST00000331710 3256 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
HMGB3O15347 POLR2M-206ENST00000494490 1648 ntTSL 5 BASIC13.2□□□□□ -0.3
HMGB3O15347 BIN3-201ENST00000276416 1835 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
HMGB3O15347 SLC5A7-202ENST00000409059 2032 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
HMGB3O15347 RAB9A-202ENST00000464506 2039 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
HMGB3O15347 LINC01529-205ENST00000637365 2000 ntTSL 5 BASIC13.2□□□□□ -0.3
HMGB3O15347 GPM6A-210ENST00000506894 2614 ntTSL 1 (best) BASIC13.2□□□□□ -0.3
HMGB3O15347 RASD2-201ENST00000216127 3412 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
HMGB3O15347 SRSF8-201ENST00000587424 4028 ntAPPRIS P1 BASIC13.2□□□□□ -0.3
HMGB3O15347 ZNF607-201ENST00000355202 4364 ntAPPRIS P3 TSL 2 BASIC13.2□□□□□ -0.3
HMGB3O15347 AC245052.4-201ENST00000452097 4158 ntTSL 2 BASIC13.2□□□□□ -0.3
HMGB3O15347 TMEM41B-204ENST00000528080 3968 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
HMGB3O15347 RAB3IP-207ENST00000483530 1755 ntTSL 1 (best) BASIC13.2□□□□□ -0.3
HMGB3O15347 AC009336.1-201ENST00000608941 1553 ntBASIC13.2□□□□□ -0.3
HMGB3O15347 HOXA3-202ENST00000396352 3263 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
HMGB3O15347 CNOT9-208ENST00000542068 3259 ntAPPRIS P1 TSL 5 BASIC13.19□□□□□ -0.3
HMGB3O15347 AP005117.1-202ENST00000581724 1908 ntBASIC13.19□□□□□ -0.3
HMGB3O15347 DISC1-222ENST00000622252 6927 ntAPPRIS ALT2 TSL 5 BASIC13.19□□□□□ -0.3
HMGB3O15347 MC1R-202ENST00000555147 3099 ntAPPRIS P1 BASIC13.19□□□□□ -0.3
HMGB3O15347 PBX1-215ENST00000559240 2866 ntTSL 5 BASIC13.19□□□□□ -0.3
HMGB3O15347 GGT4P-201ENST00000623672 1708 ntBASIC13.19□□□□□ -0.3
HMGB3O15347 NRP2-204ENST00000360409 6662 ntTSL 1 (best) BASIC13.19□□□□□ -0.3
HMGB3O15347 AC027031.2-201ENST00000521369 1318 ntTSL 1 (best) BASIC13.19□□□□□ -0.3
HMGB3O15347 FAM120C-202ENST00000375180 8057 ntAPPRIS P3 TSL 1 (best) BASIC13.19□□□□□ -0.3
HMGB3O15347 F3-202ENST00000370207 1879 ntTSL 1 (best) BASIC13.19□□□□□ -0.3
HMGB3O15347 GARS-201ENST00000389266 2634 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
HMGB3O15347 ARMC6-203ENST00000392336 1866 ntTSL 2 BASIC13.19□□□□□ -0.3
HMGB3O15347 SP100-204ENST00000409341 1898 ntTSL 1 (best) BASIC13.19□□□□□ -0.3
HMGB3O15347 DEF8-210ENST00000563594 4450 ntAPPRIS P4 TSL 1 (best) BASIC13.19□□□□□ -0.3
HMGB3O15347 SCAP-206ENST00000428413 3749 ntTSL 5 BASIC13.19□□□□□ -0.3
HMGB3O15347 ASB7-202ENST00000343276 1694 ntTSL 1 (best) BASIC13.19□□□□□ -0.3
HMGB3O15347 TRIM60-203ENST00000508504 1674 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
HMGB3O15347 WDR18-204ENST00000587001 1465 ntTSL 5 BASIC13.19□□□□□ -0.3
HMGB3O15347 ZNF219-202ENST00000421093 2908 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
HMGB3O15347 HCRT-201ENST00000293330 577 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
HMGB3O15347 SSSCA1-201ENST00000309328 698 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
HMGB3O15347 INPP5F-203ENST00000369081 874 ntTSL 1 (best) BASIC13.19□□□□□ -0.3
HMGB3O15347 FAM8A6P-201ENST00000407496 1135 ntBASIC13.19□□□□□ -0.3
HMGB3O15347 TMEM243-203ENST00000433078 1273 ntAPPRIS P1 TSL 2 BASIC13.19□□□□□ -0.3
HMGB3O15347 GCSHP5-201ENST00000443090 522 ntBASIC13.19□□□□□ -0.3
HMGB3O15347 NCAM1-AS1-201ENST00000526229 1081 ntTSL 2 BASIC13.19□□□□□ -0.3
HMGB3O15347 CLDN7-204ENST00000571881 735 ntTSL 3 BASIC13.19□□□□□ -0.3
HMGB3O15347 CROCCP2-205ENST00000639481 1296 ntTSL 1 (best) BASIC13.19□□□□□ -0.3
HMGB3O15347 MVK-207ENST00000539575 2747 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
HMGB3O15347 AC009242.1-201ENST00000634300 2706 ntTSL 5 BASIC13.19□□□□□ -0.3
HMGB3O15347 TBXAS1-201ENST00000336425 2185 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
HMGB3O15347 NSDHL-203ENST00000440023 1630 ntAPPRIS P2 TSL 5 BASIC13.19□□□□□ -0.3
HMGB3O15347 ZNF197-203ENST00000383744 1989 ntTSL 1 (best) BASIC13.19□□□□□ -0.3
HMGB3O15347 NCAM1-225ENST00000618266 5937 ntAPPRIS ALT2 TSL 5 BASIC13.19□□□□□ -0.3
HMGB3O15347 SHANK2-211ENST00000449833 8850 ntTSL 5 BASIC13.19□□□□□ -0.3
HMGB3O15347 KRT73-201ENST00000305748 2284 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
HMGB3O15347 CYB561D1-204ENST00000420578 3326 ntAPPRIS P3 TSL 1 (best) BASIC13.19□□□□□ -0.3
HMGB3O15347 SBSN-201ENST00000452271 1945 ntAPPRIS ALT2 TSL 1 (best) BASIC13.19□□□□□ -0.3
HMGB3O15347 AC006449.6-201ENST00000612330 2296 ntBASIC13.19□□□□□ -0.3
HMGB3O15347 ZNF318-201ENST00000361428 8006 ntAPPRIS P2 TSL 1 (best) BASIC13.19□□□□□ -0.3
HMGB3O15347 TRPA1-201ENST00000262209 5223 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
HMGB3O15347 PPP3CB-201ENST00000342558 2418 ntTSL 5 BASIC13.19□□□□□ -0.3
HMGB3O15347 NPRL2-201ENST00000232501 1700 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
HMGB3O15347 TPO-203ENST00000346956 2923 ntTSL 5 BASIC13.19□□□□□ -0.3
HMGB3O15347 KRT82-201ENST00000257974 2664 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
HMGB3O15347 RUFY2-204ENST00000399200 2685 ntTSL 1 (best) BASIC13.18□□□□□ -0.3
HMGB3O15347 SRRM2-AS1-203ENST00000571305 1344 ntTSL 2 BASIC13.18□□□□□ -0.3
HMGB3O15347 SLC8B1-201ENST00000202831 2975 ntAPPRIS P1 TSL 5 BASIC13.18□□□□□ -0.3
HMGB3O15347 ADAD1-201ENST00000296513 1961 ntAPPRIS P1 TSL 2 BASIC13.18□□□□□ -0.3
HMGB3O15347 NRN1-201ENST00000244766 1624 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
HMGB3O15347 CD1D-201ENST00000368171 2253 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
HMGB3O15347 JPT1-203ENST00000409753 1605 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
HMGB3O15347 EIF2B4-206ENST00000451130 1633 ntTSL 1 (best) BASIC13.18□□□□□ -0.3
HMGB3O15347 CTD-3080P12.3-203ENST00000514376 1757 ntTSL 1 (best) BASIC13.18□□□□□ -0.3
HMGB3O15347 ARHGAP9-203ENST00000424809 2569 ntTSL 2 BASIC13.18□□□□□ -0.3
HMGB3O15347 PKIA-202ENST00000396418 4163 ntAPPRIS P1 TSL 2 BASIC13.18□□□□□ -0.3
HMGB3O15347 NCOR2-201ENST00000356219 7226 ntTSL 5 BASIC13.18□□□□□ -0.3
HMGB3O15347 RASGEF1C-206ENST00000522500 2055 ntTSL 2 BASIC13.18□□□□□ -0.3
HMGB3O15347 TXNDC2-206ENST00000611534 2066 ntAPPRIS ALT2 TSL 5 BASIC13.18□□□□□ -0.3
HMGB3O15347 HSCB-201ENST00000216027 1114 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
HMGB3O15347 UFSP1-201ENST00000388761 996 ntAPPRIS P1 BASIC13.18□□□□□ -0.3
HMGB3O15347 HDAC11-203ENST00000402271 1018 ntTSL 3 BASIC13.18□□□□□ -0.3
HMGB3O15347 CD70-202ENST00000423145 881 ntTSL 2 BASIC13.18□□□□□ -0.3
HMGB3O15347 SPDYE15P-201ENST00000424157 909 ntBASIC13.18□□□□□ -0.3
HMGB3O15347 TTTY14-203ENST00000447937 920 ntTSL 3 BASIC13.18□□□□□ -0.3
HMGB3O15347 TSPY20P-201ENST00000450910 630 ntBASIC13.18□□□□□ -0.3
HMGB3O15347 NDUFB2-203ENST00000461457 559 ntTSL 3 BASIC13.18□□□□□ -0.3
HMGB3O15347 DCTN3-209ENST00000477738 713 ntTSL 3 BASIC13.18□□□□□ -0.3
HMGB3O15347 MNX1-AS1-201ENST00000480284 1041 ntTSL 1 (best) BASIC13.18□□□□□ -0.3
HMGB3O15347 AC019068.1-202ENST00000483218 768 ntTSL 3 BASIC13.18□□□□□ -0.3
HMGB3O15347 AC092597.1-201ENST00000487352 616 ntBASIC13.18□□□□□ -0.3
HMGB3O15347 NDUFV2-207ENST00000497577 868 ntTSL 2 BASIC13.18□□□□□ -0.3
HMGB3O15347 AC008429.1-203ENST00000518894 548 ntTSL 4 BASIC13.18□□□□□ -0.3
HMGB3O15347 MRPL52-215ENST00000556840 398 ntTSL 2 BASIC13.18□□□□□ -0.3
HMGB3O15347 MRPL46-202ENST00000558531 1002 ntTSL 2 BASIC13.18□□□□□ -0.3
HMGB3O15347 AC097641.1-201ENST00000580671 588 ntTSL 4 BASIC13.18□□□□□ -0.3
HMGB3O15347 MIR2117HG-201ENST00000588060 506 ntTSL 4 BASIC13.18□□□□□ -0.3
HMGB3O15347 AC140113.3-201ENST00000605663 199 ntBASIC13.18□□□□□ -0.3
Retrieved 100 of 98,524 protein–RNA pairs in 39.4 ms