Protein–RNA interactions for Protein: O60663

LMX1B, LIM homeobox transcription factor 1-beta, humanhuman

Predictions only

Length 402 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LMX1BO60663 AL512625.3-203ENST00000445604 1602 ntTSL 5 BASIC14.41□□□□□ -0.1
LMX1BO60663 SERHL2-203ENST00000340239 1315 ntTSL 5 BASIC14.41□□□□□ -0.1
LMX1BO60663 GFOD1-203ENST00000379287 8751 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
LMX1BO60663 ICA1L-201ENST00000358299 3457 ntAPPRIS P1 TSL 2 BASIC14.4□□□□□ -0.1
LMX1BO60663 SLC2A13-202ENST00000380858 3082 ntTSL 1 (best) BASIC14.4□□□□□ -0.1
LMX1BO60663 GHDC-201ENST00000301671 2650 ntAPPRIS P1 TSL 2 BASIC14.4□□□□□ -0.1
LMX1BO60663 PDE1B-201ENST00000243052 3444 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
LMX1BO60663 ADM-201ENST00000278175 1885 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
LMX1BO60663 KIFC3-206ENST00000541240 3047 ntTSL 2 BASIC14.4□□□□□ -0.1
LMX1BO60663 SALL3-202ENST00000537592 6555 ntAPPRIS P1 TSL 5 BASIC14.4□□□□□ -0.1
LMX1BO60663 DMRTC2-201ENST00000269945 1792 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
LMX1BO60663 INTS11-203ENST00000419704 1798 ntTSL 2 BASIC14.4□□□□□ -0.1
LMX1BO60663 PRKD2-216ENST00000601806 2906 ntAPPRIS ALT2 TSL 5 BASIC14.4□□□□□ -0.1
LMX1BO60663 LSP1-204ENST00000406638 2640 ntAPPRIS ALT2 TSL 2 BASIC14.4□□□□□ -0.1
LMX1BO60663 AC073957.2-201ENST00000549241 1562 ntTSL 4 BASIC14.4□□□□□ -0.1
LMX1BO60663 NFATC2-206ENST00000609943 5690 ntAPPRIS ALT2 TSL 1 (best) BASIC14.4□□□□□ -0.1
LMX1BO60663 PIPOX-201ENST00000323372 2414 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
LMX1BO60663 SCAF1-201ENST00000360565 4306 ntAPPRIS P2 TSL 2 BASIC14.4□□□□□ -0.1
LMX1BO60663 AK5-203ENST00000354567 3251 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
LMX1BO60663 POC1B-202ENST00000393179 3096 ntTSL 1 (best) BASIC14.4□□□□□ -0.1
LMX1BO60663 TRAPPC1-201ENST00000303731 811 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
LMX1BO60663 NPY-203ENST00000407573 705 ntAPPRIS P1 TSL 3 BASIC14.4□□□□□ -0.1
LMX1BO60663 PIGBOS1-201ENST00000436697 866 ntAPPRIS P2 TSL 2 BASIC14.4□□□□□ -0.1
LMX1BO60663 AKIRIN1-203ENST00000446189 1243 ntTSL 2 BASIC14.4□□□□□ -0.1
LMX1BO60663 OST4-202ENST00000447619 458 ntAPPRIS P1 TSL 2 BASIC14.4□□□□□ -0.1
LMX1BO60663 AC005020.2-201ENST00000455905 830 ntAPPRIS P1 TSL 3 BASIC14.4□□□□□ -0.1
LMX1BO60663 UBE2V2-201ENST00000517630 612 ntTSL 4 BASIC14.4□□□□□ -0.1
LMX1BO60663 GIPC1-213ENST00000591349 1068 ntTSL 2 BASIC14.4□□□□□ -0.1
LMX1BO60663 RRM2B-201ENST00000251810 4931 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
LMX1BO60663 PRICKLE1-211ENST00000639566 3341 ntAPPRIS P1 TSL 5 BASIC14.4□□□□□ -0.1
LMX1BO60663 BX276092.9-202ENST00000636096 1722 ntAPPRIS P5 TSL 5 BASIC14.4□□□□□ -0.1
LMX1BO60663 CHD1L-203ENST00000369259 2358 ntTSL 1 (best) BASIC14.4□□□□□ -0.1
LMX1BO60663 NKIRAS1-202ENST00000412028 1605 ntAPPRIS ALT1 TSL 5 BASIC14.4□□□□□ -0.1
LMX1BO60663 KTN1-AS1-202ENST00000412224 2185 ntTSL 2 BASIC14.4□□□□□ -0.1
LMX1BO60663 SLC29A1-209ENST00000427851 2171 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
LMX1BO60663 UBE2G1-204ENST00000572484 1514 ntTSL 5 BASIC14.4□□□□□ -0.1
LMX1BO60663 WDR1-202ENST00000382451 2722 ntTSL 1 (best) BASIC14.4□□□□□ -0.1
LMX1BO60663 CUX1-213ENST00000549414 4452 ntAPPRIS ALT2 TSL 5 BASIC14.4□□□□□ -0.1
LMX1BO60663 SPSB1-202ENST00000357898 1439 ntAPPRIS P1 TSL 5 BASIC14.4□□□□□ -0.1
LMX1BO60663 KDM4B-211ENST00000611640 5703 ntTSL 5 BASIC14.4□□□□□ -0.1
LMX1BO60663 SRPX-201ENST00000378533 1874 ntAPPRIS P3 TSL 1 (best) BASIC14.4□□□□□ -0.1
LMX1BO60663 FAM3D-201ENST00000358781 1319 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
LMX1BO60663 LINC02415-201ENST00000508505 1315 ntTSL 1 (best) BASIC14.4□□□□□ -0.1
LMX1BO60663 HARS-203ENST00000431330 1774 ntTSL 2 BASIC14.39□□□□□ -0.11
LMX1BO60663 DNAJB8-AS1-201ENST00000471626 1798 ntTSL 2 BASIC14.39□□□□□ -0.11
LMX1BO60663 SLC4A3-201ENST00000273063 4246 ntTSL 1 (best) BASIC14.39□□□□□ -0.11
LMX1BO60663 RUSC1-205ENST00000368354 3114 ntTSL 2 BASIC14.39□□□□□ -0.11
LMX1BO60663 LETM2-201ENST00000297720 1693 ntTSL 2 BASIC14.39□□□□□ -0.11
LMX1BO60663 CASK-202ENST00000378158 3848 ntTSL 5 BASIC14.39□□□□□ -0.11
LMX1BO60663 TBC1D1-203ENST00000402522 1567 ntTSL 2 BASIC14.39□□□□□ -0.11
LMX1BO60663 GAL3ST1-203ENST00000402321 1908 ntAPPRIS P1 TSL 2 BASIC14.39□□□□□ -0.11
LMX1BO60663 AFF2-204ENST00000370458 1488 ntTSL 1 (best) BASIC14.39□□□□□ -0.11
LMX1BO60663 AL353732.1-201ENST00000569618 1459 ntBASIC14.39□□□□□ -0.11
LMX1BO60663 TRIM72-201ENST00000322122 8500 ntAPPRIS P1 TSL 2 BASIC14.39□□□□□ -0.11
LMX1BO60663 PIK3R6-203ENST00000614407 2265 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
LMX1BO60663 PUF60-201ENST00000313352 1804 ntAPPRIS ALT1 TSL 1 (best) BASIC14.39□□□□□ -0.11
LMX1BO60663 PMS1-212ENST00000432292 3234 ntTSL 2 BASIC14.39□□□□□ -0.11
LMX1BO60663 GLUL-201ENST00000311223 4719 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
LMX1BO60663 YIF1B-203ENST00000339413 1225 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
LMX1BO60663 TIMM17B-202ENST00000396779 1099 ntTSL 5 BASIC14.39□□□□□ -0.11
LMX1BO60663 AL359317.2-203ENST00000557409 538 ntTSL 4 BASIC14.39□□□□□ -0.11
LMX1BO60663 AC068594.1-203ENST00000581153 695 ntTSL 2 BASIC14.39□□□□□ -0.11
LMX1BO60663 CCDC59-201ENST00000256151 1983 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
LMX1BO60663 DGAT1-206ENST00000528718 3711 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
LMX1BO60663 RASA4B-202ENST00000465829 2931 ntAPPRIS ALT1 TSL 1 (best) BASIC14.39□□□□□ -0.11
LMX1BO60663 CABP1-204ENST00000453000 1857 ntTSL 1 (best) BASIC14.39□□□□□ -0.11
LMX1BO60663 WBP2-204ENST00000585462 1895 ntTSL 3 BASIC14.39□□□□□ -0.11
LMX1BO60663 SDCBP2-202ENST00000360779 1519 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
LMX1BO60663 PITPNM1-201ENST00000356404 4225 ntAPPRIS P3 TSL 1 (best) BASIC14.39□□□□□ -0.11
LMX1BO60663 MSMO1-202ENST00000393766 1789 ntTSL 2 BASIC14.39□□□□□ -0.11
LMX1BO60663 NFATC4-211ENST00000554344 2955 ntAPPRIS ALT2 TSL 1 (best) BASIC14.39□□□□□ -0.11
LMX1BO60663 CGREF1-206ENST00000405600 1346 ntAPPRIS P2 TSL 4 BASIC14.39□□□□□ -0.11
LMX1BO60663 RHOC-201ENST00000285735 2199 ntAPPRIS P1 TSL 2 BASIC14.39□□□□□ -0.11
LMX1BO60663 AC092198.1-201ENST00000447651 2691 ntTSL 2 BASIC14.38□□□□□ -0.11
LMX1BO60663 AC011270.2-201ENST00000624293 2550 ntBASIC14.38□□□□□ -0.11
LMX1BO60663 DHRS1-201ENST00000288111 1480 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
LMX1BO60663 CYP51A1P2-201ENST00000419457 1499 ntBASIC14.38□□□□□ -0.11
LMX1BO60663 AP2A2-222ENST00000534328 1491 ntTSL 5 BASIC14.38□□□□□ -0.11
LMX1BO60663 SEPT5-204ENST00000406395 1974 ntTSL 5 BASIC14.38□□□□□ -0.11
LMX1BO60663 DDOST-206ENST00000602624 1963 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
LMX1BO60663 L2HGDH-202ENST00000267436 6414 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
LMX1BO60663 YY1-201ENST00000262238 6697 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
LMX1BO60663 EVC2-202ENST00000344408 4390 ntAPPRIS P3 TSL 1 (best) BASIC14.38□□□□□ -0.11
LMX1BO60663 CACFD1-206ENST00000540581 2880 ntAPPRIS ALT2 TSL 2 BASIC14.38□□□□□ -0.11
LMX1BO60663 LYNX1-206ENST00000621401 4537 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
LMX1BO60663 EML3-202ENST00000394773 3256 ntAPPRIS P2 TSL 1 (best) BASIC14.38□□□□□ -0.11
LMX1BO60663 KRT73-201ENST00000305748 2284 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
LMX1BO60663 CTCF-201ENST00000264010 3939 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
LMX1BO60663 ZMYND12-201ENST00000372565 1775 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
LMX1BO60663 RSRP1-201ENST00000243189 1502 ntAPPRIS P2 TSL 1 (best) BASIC14.38□□□□□ -0.11
LMX1BO60663 TMEM44-201ENST00000330115 1278 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
LMX1BO60663 ABHD11-203ENST00000395147 812 ntTSL 3 BASIC14.38□□□□□ -0.11
LMX1BO60663 AP1S3-203ENST00000396654 830 ntAPPRIS P2 TSL 2 BASIC14.38□□□□□ -0.11
LMX1BO60663 SYS1-203ENST00000414310 795 ntTSL 3 BASIC14.38□□□□□ -0.11
LMX1BO60663 LINC01786-201ENST00000434139 268 ntTSL 5 BASIC14.38□□□□□ -0.11
LMX1BO60663 ZIC4-214ENST00000491672 925 ntTSL 4 BASIC14.38□□□□□ -0.11
LMX1BO60663 AC119403.1-201ENST00000520090 776 ntTSL 5 BASIC14.38□□□□□ -0.11
LMX1BO60663 OAZ1-202ENST00000582888 969 ntAPPRIS ALT1 TSL 5 BASIC14.38□□□□□ -0.11
LMX1BO60663 AC011467.4-201ENST00000594891 528 ntBASIC14.38□□□□□ -0.11
LMX1BO60663 AL590999.1-203ENST00000606829 542 ntTSL 4 BASIC14.38□□□□□ -0.11
Retrieved 100 of 98,524 protein–RNA pairs in 37.2 ms