Protein–RNA interactions for Protein: Q9UFE4

CCDC39, Coiled-coil domain-containing protein 39, humanhuman

Predictions only

Length 941 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC39Q9UFE4 C2orf54-203ENST00000402775 1958 ntAPPRIS ALT2 TSL 2 BASIC19.02■□□□□ 0.64
CCDC39Q9UFE4 FAM228B-210ENST00000615575 1357 ntAPPRIS P3 TSL 5 BASIC19.02■□□□□ 0.64
CCDC39Q9UFE4 SQSTM1-213ENST00000510187 1714 ntTSL 5 BASIC19.02■□□□□ 0.63
CCDC39Q9UFE4 GINS2-201ENST00000253462 2673 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.63
CCDC39Q9UFE4 ILF3-210ENST00000588657 2697 ntAPPRIS ALT2 TSL 5 BASIC19.02■□□□□ 0.63
CCDC39Q9UFE4 BECN1-213ENST00000590099 2087 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.63
CCDC39Q9UFE4 CPD-201ENST00000225719 9394 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.63
CCDC39Q9UFE4 CEP104-202ENST00000378230 6424 ntAPPRIS P1 TSL 5 BASIC19.02■□□□□ 0.63
CCDC39Q9UFE4 FAM181A-201ENST00000267594 1816 ntTSL 2 BASIC19.02■□□□□ 0.63
CCDC39Q9UFE4 GRB7-205ENST00000445327 2197 ntTSL 2 BASIC19.02■□□□□ 0.63
CCDC39Q9UFE4 HSPA1B-201ENST00000375650 2521 ntAPPRIS P1 BASIC19.02■□□□□ 0.63
CCDC39Q9UFE4 COL4A1-204ENST00000543140 2547 ntTSL 1 (best) BASIC19.02■□□□□ 0.63
CCDC39Q9UFE4 SLC6A2-204ENST00000561820 2268 ntTSL 5 BASIC19.02■□□□□ 0.63
CCDC39Q9UFE4 NFIC-210ENST00000590282 1558 ntTSL 2 BASIC19.02■□□□□ 0.63
CCDC39Q9UFE4 ARL8B-208ENST00000611208 2981 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.63
CCDC39Q9UFE4 LINC01529-205ENST00000637365 2000 ntTSL 5 BASIC19.01■□□□□ 0.63
CCDC39Q9UFE4 ABLIM2-202ENST00000361581 2472 ntAPPRIS ALT2 TSL 1 (best) BASIC19.01■□□□□ 0.63
CCDC39Q9UFE4 SURF6-201ENST00000372022 4447 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
CCDC39Q9UFE4 TMEM139-205ENST00000410004 2114 ntAPPRIS P1 TSL 2 BASIC19.01■□□□□ 0.63
CCDC39Q9UFE4 TSPAN4-205ENST00000397406 1426 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
CCDC39Q9UFE4 LY6E-207ENST00000520466 1419 ntAPPRIS P2 TSL 2 BASIC19.01■□□□□ 0.63
CCDC39Q9UFE4 DAP-201ENST00000230895 2339 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
CCDC39Q9UFE4 C19orf48-201ENST00000345523 1503 ntAPPRIS P1 TSL 2 BASIC19.01■□□□□ 0.63
CCDC39Q9UFE4 OTUD3-201ENST00000375120 6397 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
CCDC39Q9UFE4 ANKMY1-203ENST00000373318 2449 ntTSL 1 (best) BASIC19.01■□□□□ 0.63
CCDC39Q9UFE4 CPEB2-AS1-201ENST00000500394 1630 ntTSL 1 (best) BASIC19.01■□□□□ 0.63
CCDC39Q9UFE4 AC006277.1-201ENST00000624348 1610 ntBASIC19.01■□□□□ 0.63
CCDC39Q9UFE4 TBXAS1-201ENST00000336425 2185 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
CCDC39Q9UFE4 OLFM1-207ENST00000371801 568 ntTSL 2 BASIC19.01■□□□□ 0.63
CCDC39Q9UFE4 FIGNL1-207ENST00000435566 593 ntTSL 4 BASIC19.01■□□□□ 0.63
CCDC39Q9UFE4 PP7080-204ENST00000510714 601 ntTSL 3 BASIC19.01■□□□□ 0.63
CCDC39Q9UFE4 MOK-208ENST00000519058 917 ntTSL 2 BASIC19.01■□□□□ 0.63
CCDC39Q9UFE4 AC069287.3-201ENST00000527297 589 ntTSL 5 BASIC19.01■□□□□ 0.63
CCDC39Q9UFE4 FAU-209ENST00000531743 697 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
CCDC39Q9UFE4 KRT126P-201ENST00000549467 1181 ntBASIC19.01■□□□□ 0.63
CCDC39Q9UFE4 ANKRD34C-AS1-203ENST00000559225 528 ntTSL 4 BASIC19.01■□□□□ 0.63
CCDC39Q9UFE4 AC133919.2-201ENST00000565965 589 ntTSL 4 BASIC19.01■□□□□ 0.63
CCDC39Q9UFE4 AL356488.2-201ENST00000602755 427 ntBASIC19.01■□□□□ 0.63
CCDC39Q9UFE4 HNF1A-211ENST00000543427 2819 ntTSL 5 BASIC19.01■□□□□ 0.63
CCDC39Q9UFE4 KCNT1-214ENST00000631073 3948 ntAPPRIS ALT2 TSL 5 BASIC19.01■□□□□ 0.63
CCDC39Q9UFE4 POLI-208ENST00000579534 6133 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
CCDC39Q9UFE4 MROH6-201ENST00000398882 3469 ntAPPRIS P2 TSL 5 BASIC19.01■□□□□ 0.63
CCDC39Q9UFE4 ACE-204ENST00000428043 5120 ntTSL 2 BASIC19.01■□□□□ 0.63
CCDC39Q9UFE4 KCNMA1-251ENST00000639090 4319 ntAPPRIS ALT2 TSL 5 BASIC19.01■□□□□ 0.63
CCDC39Q9UFE4 PDE8B-204ENST00000342343 2677 ntAPPRIS ALT2 TSL 1 (best) BASIC19.01■□□□□ 0.63
CCDC39Q9UFE4 IQSEC3-203ENST00000538872 7094 ntAPPRIS ALT2 TSL 5 BASIC19.01■□□□□ 0.63
CCDC39Q9UFE4 GLG1-201ENST00000205061 8261 ntAPPRIS P3 TSL 1 (best) BASIC19.01■□□□□ 0.63
CCDC39Q9UFE4 RAP1GDS1-203ENST00000380158 2085 ntTSL 1 (best) BASIC19.01■□□□□ 0.63
CCDC39Q9UFE4 IRF1-202ENST00000405885 2061 ntAPPRIS P1 TSL 5 BASIC19.01■□□□□ 0.63
CCDC39Q9UFE4 KCNC2-207ENST00000548513 3026 ntAPPRIS ALT2 TSL 1 (best) BASIC19■□□□□ 0.63
CCDC39Q9UFE4 FIP1L1-207ENST00000507922 1335 ntTSL 1 (best) BASIC19■□□□□ 0.63
CCDC39Q9UFE4 ARFGAP1-220ENST00000547204 1327 ntTSL 2 BASIC19■□□□□ 0.63
CCDC39Q9UFE4 AIFM2-204ENST00000613322 3247 ntAPPRIS P1 TSL 5 BASIC19■□□□□ 0.63
CCDC39Q9UFE4 LMCD1-204ENST00000426878 1431 ntTSL 2 BASIC19■□□□□ 0.63
CCDC39Q9UFE4 EPN2-201ENST00000314728 4871 ntAPPRIS P4 TSL 1 (best) BASIC19■□□□□ 0.63
CCDC39Q9UFE4 SEPT8-208ENST00000378721 1723 ntTSL 5 BASIC19■□□□□ 0.63
CCDC39Q9UFE4 PC-204ENST00000524491 1714 ntTSL 2 BASIC19■□□□□ 0.63
CCDC39Q9UFE4 C14orf93-202ENST00000341470 2221 ntTSL 1 (best) BASIC19■□□□□ 0.63
CCDC39Q9UFE4 TPD52L2-203ENST00000348257 2237 ntAPPRIS ALT1 TSL 1 (best) BASIC19■□□□□ 0.63
CCDC39Q9UFE4 TBRG4-203ENST00000395655 2225 ntTSL 2 BASIC19■□□□□ 0.63
CCDC39Q9UFE4 ATP2A2-204ENST00000539276 4094 ntAPPRIS P4 TSL 1 (best) BASIC19■□□□□ 0.63
CCDC39Q9UFE4 XPO5-201ENST00000265351 5364 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
CCDC39Q9UFE4 TMEM59-202ENST00000371337 600 ntTSL 2 BASIC19■□□□□ 0.63
CCDC39Q9UFE4 PDLIM4-202ENST00000379018 1006 ntTSL 1 (best) BASIC19■□□□□ 0.63
CCDC39Q9UFE4 UFD1-202ENST00000399523 1007 ntTSL 1 (best) BASIC19■□□□□ 0.63
CCDC39Q9UFE4 AC109309.1-201ENST00000418995 435 ntTSL 3 BASIC19■□□□□ 0.63
CCDC39Q9UFE4 SNHG17-206ENST00000436764 973 ntTSL 5 BASIC19■□□□□ 0.63
CCDC39Q9UFE4 NDUFB2-208ENST00000471136 499 ntTSL 3 BASIC19■□□□□ 0.63
CCDC39Q9UFE4 ACP6-203ENST00000487562 1258 ntTSL 5 BASIC19■□□□□ 0.63
CCDC39Q9UFE4 RPS29-206ENST00000557111 488 ntTSL 2 BASIC19■□□□□ 0.63
CCDC39Q9UFE4 CALM3-211ENST00000598871 561 ntTSL 4 BASIC19■□□□□ 0.63
CCDC39Q9UFE4 AC008667.4-201ENST00000607370 168 ntBASIC19■□□□□ 0.63
CCDC39Q9UFE4 AL031008.1-201ENST00000619963 541 ntBASIC19■□□□□ 0.63
CCDC39Q9UFE4 REXO1L3P-201ENST00000622202 1288 ntBASIC19■□□□□ 0.63
CCDC39Q9UFE4 AC005593.1-201ENST00000624894 515 ntBASIC19■□□□□ 0.63
CCDC39Q9UFE4 CD9-203ENST00000382518 1556 ntAPPRIS P1 TSL 5 BASIC19■□□□□ 0.63
CCDC39Q9UFE4 PDCD5-203ENST00000419343 1799 ntTSL 2 BASIC19■□□□□ 0.63
CCDC39Q9UFE4 NLE1-202ENST00000442241 2588 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
CCDC39Q9UFE4 AC073264.3-201ENST00000636941 2577 ntAPPRIS P1 TSL 5 BASIC19■□□□□ 0.63
CCDC39Q9UFE4 CLIC6-202ENST00000360731 3860 ntAPPRIS ALT2 TSL 1 (best) BASIC19■□□□□ 0.63
CCDC39Q9UFE4 SMAD6-201ENST00000288840 3835 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
CCDC39Q9UFE4 LINC00599-203ENST00000519461 2922 ntTSL 1 (best) BASIC19■□□□□ 0.63
CCDC39Q9UFE4 EGLN3-201ENST00000250457 2709 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
CCDC39Q9UFE4 SPCS2-201ENST00000263672 2708 ntAPPRIS P2 TSL 1 (best) BASIC19■□□□□ 0.63
CCDC39Q9UFE4 UROC1-202ENST00000383579 2735 ntTSL 1 (best) BASIC19■□□□□ 0.63
CCDC39Q9UFE4 ZNF408-201ENST00000311764 2442 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
CCDC39Q9UFE4 USHBP1-203ENST00000431146 2136 ntTSL 2 BASIC19■□□□□ 0.63
CCDC39Q9UFE4 TMC6-216ENST00000590602 5268 ntAPPRIS P1 TSL 2 BASIC19■□□□□ 0.63
CCDC39Q9UFE4 AC003986.2-201ENST00000419944 1711 ntTSL 3 BASIC19■□□□□ 0.63
CCDC39Q9UFE4 DAPK2-202ENST00000457488 1741 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
CCDC39Q9UFE4 AP004609.1-201ENST00000498872 1646 ntTSL 1 (best) BASIC19■□□□□ 0.63
CCDC39Q9UFE4 TRAPPC3-209ENST00000616395 1336 ntTSL 3 BASIC19■□□□□ 0.63
CCDC39Q9UFE4 TRAPPC3-210ENST00000617904 1305 ntTSL 2 BASIC19■□□□□ 0.63
CCDC39Q9UFE4 AC010491.1-201ENST00000563101 2797 ntBASIC18.99■□□□□ 0.63
CCDC39Q9UFE4 ZNF30-202ENST00000439785 2651 ntAPPRIS P4 TSL 5 BASIC18.99■□□□□ 0.63
CCDC39Q9UFE4 TMEM139-201ENST00000359333 2383 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
CCDC39Q9UFE4 TTBK1-201ENST00000259750 6932 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
CCDC39Q9UFE4 TRPC4AP-201ENST00000252015 3226 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
CCDC39Q9UFE4 KIAA1841-201ENST00000295031 3116 ntTSL 1 (best) BASIC18.99■□□□□ 0.63
CCDC39Q9UFE4 COPS8-202ENST00000392008 1654 ntTSL 2 BASIC18.99■□□□□ 0.63
Retrieved 100 of 98,524 protein–RNA pairs in 40.9 ms