Protein–RNA interactions for Protein: Q96GC9

VMP1, Vacuole membrane protein 1, humanhuman

Predictions only

Length 406 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VMP1Q96GC9 ABHD16A-201ENST00000395952 2103 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
VMP1Q96GC9 TMEM205-202ENST00000447337 916 ntAPPRIS P1 TSL 2 BASIC15.75■□□□□ 0.11
VMP1Q96GC9 EEF1E1-205ENST00000507463 654 ntTSL 2 BASIC15.75■□□□□ 0.11
VMP1Q96GC9 JPH4-203ENST00000544177 1124 ntTSL 2 BASIC15.75■□□□□ 0.11
VMP1Q96GC9 FAM181A-205ENST00000557719 1072 ntAPPRIS P1 TSL 2 BASIC15.75■□□□□ 0.11
VMP1Q96GC9 PDPK2P-202ENST00000562415 1191 ntBASIC15.75■□□□□ 0.11
VMP1Q96GC9 AL513190.1-201ENST00000621254 727 ntBASIC15.75■□□□□ 0.11
VMP1Q96GC9 LINC01635-202ENST00000635097 1023 ntTSL 5 BASIC15.75■□□□□ 0.11
VMP1Q96GC9 AC092865.6-201ENST00000642101 219 ntBASIC15.75■□□□□ 0.11
VMP1Q96GC9 KLK3-201ENST00000326003 1463 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
VMP1Q96GC9 S1PR2-201ENST00000590320 3582 ntAPPRIS P1 TSL 3 BASIC15.75■□□□□ 0.11
VMP1Q96GC9 TTC6-206ENST00000553443 5833 ntAPPRIS P1 TSL 5 BASIC15.75■□□□□ 0.11
VMP1Q96GC9 NACAD-202ENST00000490531 4780 ntAPPRIS P1 TSL 5 BASIC15.75■□□□□ 0.11
VMP1Q96GC9 AC025580.3-201ENST00000617932 1424 ntBASIC15.75■□□□□ 0.11
VMP1Q96GC9 DPEP1-203ENST00000421184 1647 ntAPPRIS P1 TSL 5 BASIC15.75■□□□□ 0.11
VMP1Q96GC9 ZFP64-205ENST00000371518 1841 ntTSL 1 (best) BASIC15.75■□□□□ 0.11
VMP1Q96GC9 WRAP53-203ENST00000431639 1818 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
VMP1Q96GC9 WRAP53-204ENST00000457584 1828 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
VMP1Q96GC9 MPP6-201ENST00000222644 8452 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
VMP1Q96GC9 MELTF-201ENST00000296350 3963 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
VMP1Q96GC9 SEPT5-204ENST00000406395 1974 ntTSL 5 BASIC15.75■□□□□ 0.11
VMP1Q96GC9 AC078925.2-201ENST00000624013 1973 ntBASIC15.75■□□□□ 0.11
VMP1Q96GC9 TOP3BP1-201ENST00000420768 1380 ntBASIC15.75■□□□□ 0.11
VMP1Q96GC9 TUBA4B-203ENST00000490341 1380 ntAPPRIS P1 TSL 2 BASIC15.75■□□□□ 0.11
VMP1Q96GC9 RDH10-201ENST00000240285 3949 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
VMP1Q96GC9 KCNC2-209ENST00000550433 2931 ntAPPRIS ALT2 TSL 1 (best) BASIC15.74■□□□□ 0.11
VMP1Q96GC9 HYAL1-201ENST00000266031 2517 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
VMP1Q96GC9 TMEM40-202ENST00000314124 2308 ntAPPRIS P3 TSL 2 BASIC15.74■□□□□ 0.11
VMP1Q96GC9 ITSN1-205ENST00000381291 5437 ntTSL 1 (best) BASIC15.74■□□□□ 0.11
VMP1Q96GC9 CCDC90B-203ENST00000525503 1919 ntTSL 1 (best) BASIC15.74■□□□□ 0.11
VMP1Q96GC9 AL590627.1-201ENST00000626603 1910 ntTSL 2 BASIC15.74■□□□□ 0.11
VMP1Q96GC9 SEPT8-208ENST00000378721 1723 ntTSL 5 BASIC15.74■□□□□ 0.11
VMP1Q96GC9 PIGT-257ENST00000640210 1715 ntTSL 5 BASIC15.74■□□□□ 0.11
VMP1Q96GC9 PRKN-202ENST00000366892 1505 ntTSL 5 BASIC15.74■□□□□ 0.11
VMP1Q96GC9 PLXDC1-201ENST00000315392 6252 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
VMP1Q96GC9 SENP1-204ENST00000549518 2260 ntAPPRIS P2 TSL 1 (best) BASIC15.74■□□□□ 0.11
VMP1Q96GC9 BEND4-203ENST00000611697 1348 ntTSL 2 BASIC15.74■□□□□ 0.11
VMP1Q96GC9 CYP4F11-203ENST00000402119 3161 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
VMP1Q96GC9 VAV2-201ENST00000371850 4837 ntTSL 1 (best) BASIC15.74■□□□□ 0.11
VMP1Q96GC9 CSNK2A1-203ENST00000400217 1451 ntTSL 2 BASIC15.74■□□□□ 0.11
VMP1Q96GC9 F12-201ENST00000253496 2049 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
VMP1Q96GC9 SLC5A7-202ENST00000409059 2032 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
VMP1Q96GC9 CSNK1A1-202ENST00000377843 2559 ntAPPRIS ALT1 TSL 1 (best) BASIC15.74■□□□□ 0.11
VMP1Q96GC9 SFXN1-201ENST00000321442 4231 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
VMP1Q96GC9 TPM1-205ENST00000357980 1800 ntTSL 2 BASIC15.74■□□□□ 0.11
VMP1Q96GC9 CGREF1-201ENST00000260595 1177 ntAPPRIS ALT2 TSL 5 BASIC15.74■□□□□ 0.11
VMP1Q96GC9 SUV39H2-202ENST00000354919 1233 ntAPPRIS ALT2 TSL 5 BASIC15.74■□□□□ 0.11
VMP1Q96GC9 SGO2-202ENST00000409203 1041 ntAPPRIS ALT2 TSL 1 (best) BASIC15.74■□□□□ 0.11
VMP1Q96GC9 MCCD1P2-201ENST00000423228 335 ntBASIC15.74■□□□□ 0.11
VMP1Q96GC9 PRR29-203ENST00000425164 1266 ntTSL 2 BASIC15.74■□□□□ 0.11
VMP1Q96GC9 LINC01786-201ENST00000434139 268 ntTSL 5 BASIC15.74■□□□□ 0.11
VMP1Q96GC9 CR559946.1-201ENST00000453835 531 ntTSL 4 BASIC15.74■□□□□ 0.11
VMP1Q96GC9 DDIAS-202ENST00000524921 607 ntAPPRIS ALT2 TSL 4 BASIC15.74■□□□□ 0.11
VMP1Q96GC9 CYB561D1-208ENST00000528785 1271 ntAPPRIS ALT1 TSL 5 BASIC15.74■□□□□ 0.11
VMP1Q96GC9 BLOC1S1-201ENST00000547076 837 ntTSL 2 BASIC15.74■□□□□ 0.11
VMP1Q96GC9 AL359317.2-203ENST00000557409 538 ntTSL 4 BASIC15.74■□□□□ 0.11
VMP1Q96GC9 AP005233.2-201ENST00000561588 372 ntTSL 3 BASIC15.74■□□□□ 0.11
VMP1Q96GC9 AC010776.2-201ENST00000588946 1081 ntTSL 2 BASIC15.74■□□□□ 0.11
VMP1Q96GC9 TEX264-216ENST00000614067 1174 ntAPPRIS ALT2 TSL 3 BASIC15.74■□□□□ 0.11
VMP1Q96GC9 ZNF445-205ENST00000617032 1291 ntTSL 5 BASIC15.74■□□□□ 0.11
VMP1Q96GC9 SOWAHB-201ENST00000334306 3220 ntAPPRIS P1 BASIC15.74■□□□□ 0.11
VMP1Q96GC9 MYB-201ENST00000316528 3571 ntTSL 5 BASIC15.74■□□□□ 0.11
VMP1Q96GC9 DNM2-202ENST00000359692 3588 ntAPPRIS P5 TSL 1 (best) BASIC15.74■□□□□ 0.11
VMP1Q96GC9 MYB-241ENST00000616088 3573 ntTSL 5 BASIC15.74■□□□□ 0.11
VMP1Q96GC9 PDHX-203ENST00000448838 2653 ntTSL 5 BASIC15.74■□□□□ 0.11
VMP1Q96GC9 GFM1-208ENST00000478576 2147 ntTSL 2 BASIC15.74■□□□□ 0.11
VMP1Q96GC9 PRKCSH-217ENST00000592741 2100 ntAPPRIS ALT2 TSL 1 (best) BASIC15.74■□□□□ 0.11
VMP1Q96GC9 GLUD2-201ENST00000328078 2493 ntAPPRIS P1 BASIC15.74■□□□□ 0.11
VMP1Q96GC9 CMTM6-201ENST00000205636 3863 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
VMP1Q96GC9 LONRF3-201ENST00000304778 2989 ntTSL 1 (best) BASIC15.74■□□□□ 0.11
VMP1Q96GC9 SGPP2-201ENST00000321276 3336 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
VMP1Q96GC9 GK2-201ENST00000358842 1942 ntAPPRIS P1 BASIC15.74■□□□□ 0.11
VMP1Q96GC9 SUCO-204ENST00000608151 5790 ntTSL 5 BASIC15.74■□□□□ 0.11
VMP1Q96GC9 LENG8-208ENST00000610347 5789 ntAPPRIS ALT2 TSL 5 BASIC15.74■□□□□ 0.11
VMP1Q96GC9 COL11A2-201ENST00000341947 6425 ntAPPRIS ALT2 TSL 5 BASIC15.74■□□□□ 0.11
VMP1Q96GC9 ADM5-201ENST00000420022 1718 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
VMP1Q96GC9 RUSC1-209ENST00000471876 1749 ntTSL 1 (best) BASIC15.74■□□□□ 0.11
VMP1Q96GC9 LILRA6-201ENST00000245621 1395 ntAPPRIS ALT2 TSL 5 BASIC15.74■□□□□ 0.11
VMP1Q96GC9 NDRG1-202ENST00000414097 3755 ntAPPRIS P1 TSL 2 BASIC15.74■□□□□ 0.11
VMP1Q96GC9 AC126177.1-201ENST00000547829 2218 ntBASIC15.74■□□□□ 0.11
VMP1Q96GC9 CKAP4-201ENST00000378026 3093 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
VMP1Q96GC9 PITPNA-201ENST00000313486 3912 ntAPPRIS P2 TSL 5 BASIC15.74■□□□□ 0.11
VMP1Q96GC9 DDX1-201ENST00000233084 2739 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
VMP1Q96GC9 SLC43A1-204ENST00000528450 2358 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
VMP1Q96GC9 DMRTC2-204ENST00000596827 1675 ntTSL 2 BASIC15.73■□□□□ 0.11
VMP1Q96GC9 TRIM9-202ENST00000338969 3312 ntTSL 2 BASIC15.73■□□□□ 0.11
VMP1Q96GC9 ZNF140-210ENST00000544426 2340 ntTSL 2 BASIC15.73■□□□□ 0.11
VMP1Q96GC9 C2orf27A-205ENST00000624391 1335 ntTSL 1 (best) BASIC15.73■□□□□ 0.11
VMP1Q96GC9 HSF2-202ENST00000452194 2643 ntAPPRIS ALT2 TSL 1 (best) BASIC15.73■□□□□ 0.11
VMP1Q96GC9 VWA2-203ENST00000603594 2600 ntTSL 2 BASIC15.73■□□□□ 0.11
VMP1Q96GC9 AL353732.1-201ENST00000569618 1459 ntBASIC15.73■□□□□ 0.11
VMP1Q96GC9 SLC4A3-201ENST00000273063 4246 ntTSL 1 (best) BASIC15.73■□□□□ 0.11
VMP1Q96GC9 PLTP-205ENST00000477313 2255 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
VMP1Q96GC9 AC068944.1-201ENST00000514855 1604 ntTSL 2 BASIC15.73■□□□□ 0.11
VMP1Q96GC9 RNF216P1-203ENST00000404404 2427 ntBASIC15.73■□□□□ 0.11
VMP1Q96GC9 RNF168-201ENST00000318037 5347 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
VMP1Q96GC9 LINC01148-201ENST00000557527 1763 ntTSL 1 (best) BASIC15.73■□□□□ 0.11
VMP1Q96GC9 HMGN4-201ENST00000377575 1225 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
VMP1Q96GC9 RNASET2-206ENST00000476238 887 ntAPPRIS P1 TSL 5 BASIC15.73■□□□□ 0.11
VMP1Q96GC9 FBXL21-206ENST00000495672 589 ntTSL 4 BASIC15.73■□□□□ 0.11
Retrieved 100 of 98,524 protein–RNA pairs in 31.6 ms