Protein–RNA interactions for Protein: O60663

LMX1B, LIM homeobox transcription factor 1-beta, humanhuman

Predictions only

Length 402 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LMX1BO60663 LMX1B-203ENST00000526117 1195 ntTSL 1 (best) BASIC14.45□□□□□ -0.1
LMX1BO60663 RFPL4AP1-201ENST00000530883 850 ntBASIC14.45□□□□□ -0.1
LMX1BO60663 MAL2-202ENST00000531508 892 ntTSL 3 BASIC14.45□□□□□ -0.1
LMX1BO60663 AC008992.1-201ENST00000591132 446 ntTSL 2 BASIC14.45□□□□□ -0.1
LMX1BO60663 CYP2A7P1-201ENST00000595391 815 ntBASIC14.45□□□□□ -0.1
LMX1BO60663 AC244153.1-202ENST00000617855 482 ntTSL 3 BASIC14.45□□□□□ -0.1
LMX1BO60663 AC244517.11-201ENST00000624192 573 ntTSL 5 BASIC14.45□□□□□ -0.1
LMX1BO60663 AC092865.6-201ENST00000642101 219 ntBASIC14.45□□□□□ -0.1
LMX1BO60663 ABCB6-201ENST00000265316 3016 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
LMX1BO60663 BRF1-206ENST00000446501 2858 ntTSL 2 BASIC14.45□□□□□ -0.1
LMX1BO60663 SUPT20HL2-201ENST00000486479 2409 ntBASIC14.45□□□□□ -0.1
LMX1BO60663 FES-207ENST00000444422 2266 ntTSL 1 (best) BASIC14.45□□□□□ -0.1
LMX1BO60663 DUSP18-206ENST00000407308 1978 ntAPPRIS P1 TSL 5 BASIC14.45□□□□□ -0.1
LMX1BO60663 FAM49B-202ENST00000517654 1817 ntAPPRIS P1 TSL 5 BASIC14.45□□□□□ -0.1
LMX1BO60663 HLA-F-218ENST00000376861 1544 ntAPPRIS ALT2 BASIC14.45□□□□□ -0.1
LMX1BO60663 IFT140-201ENST00000361339 2987 ntTSL 1 (best) BASIC14.45□□□□□ -0.1
LMX1BO60663 AC093627.6-201ENST00000478759 1365 ntTSL 5 BASIC14.45□□□□□ -0.1
LMX1BO60663 APP-204ENST00000357903 3543 ntAPPRIS ALT2 TSL 1 (best) BASIC14.45□□□□□ -0.1
LMX1BO60663 KCNQ2-209ENST00000625514 2925 ntTSL 5 BASIC14.45□□□□□ -0.1
LMX1BO60663 ZNF644-201ENST00000337393 5763 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
LMX1BO60663 SERF2-203ENST00000381359 1931 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
LMX1BO60663 PRMT5-203ENST00000397440 1907 ntTSL 1 (best) BASIC14.45□□□□□ -0.1
LMX1BO60663 MBD4-203ENST00000429544 2478 ntAPPRIS ALT2 TSL 1 (best) BASIC14.44□□□□□ -0.1
LMX1BO60663 EGFR-203ENST00000344576 2864 ntTSL 1 (best) BASIC14.44□□□□□ -0.1
LMX1BO60663 GAS7-203ENST00000432992 4970 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
LMX1BO60663 TOMM40-207ENST00000592434 3415 ntAPPRIS ALT2 TSL 2 BASIC14.44□□□□□ -0.1
LMX1BO60663 LSS-205ENST00000457828 4390 ntTSL 1 (best) BASIC14.44□□□□□ -0.1
LMX1BO60663 ARCN1-203ENST00000392859 1709 ntTSL 2 BASIC14.44□□□□□ -0.1
LMX1BO60663 GSPT2-201ENST00000340438 2802 ntAPPRIS P1 BASIC14.44□□□□□ -0.1
LMX1BO60663 THTPA-203ENST00000554789 1595 ntTSL 2 BASIC14.44□□□□□ -0.1
LMX1BO60663 RER1-202ENST00000378512 1404 ntTSL 1 (best) BASIC14.44□□□□□ -0.1
LMX1BO60663 SP100-205ENST00000409824 1802 ntTSL 5 BASIC14.44□□□□□ -0.1
LMX1BO60663 MRPL57-201ENST00000309594 2246 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
LMX1BO60663 AJ239322.1-201ENST00000419362 2209 ntTSL 2 BASIC14.44□□□□□ -0.1
LMX1BO60663 HIST2H3D-201ENST00000331491 411 ntAPPRIS P1 BASIC14.44□□□□□ -0.1
LMX1BO60663 MRPS18A-202ENST00000372133 1062 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
LMX1BO60663 HIST2H3PS2-201ENST00000392948 411 ntAPPRIS P1 BASIC14.44□□□□□ -0.1
LMX1BO60663 RFXANK-203ENST00000407360 1212 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
LMX1BO60663 TSTD1-204ENST00000423014 593 ntAPPRIS ALT2 TSL 2 BASIC14.44□□□□□ -0.1
LMX1BO60663 AL645939.2-201ENST00000427340 991 ntBASIC14.44□□□□□ -0.1
LMX1BO60663 AL109741.1-201ENST00000432195 403 ntTSL 2 BASIC14.44□□□□□ -0.1
LMX1BO60663 MKNK2P1-201ENST00000437526 628 ntBASIC14.44□□□□□ -0.1
LMX1BO60663 AC108073.2-201ENST00000464002 357 ntBASIC14.44□□□□□ -0.1
LMX1BO60663 HOXC-AS3-202ENST00000513165 533 ntTSL 3 BASIC14.44□□□□□ -0.1
LMX1BO60663 CD63-210ENST00000550776 870 ntTSL 5 BASIC14.44□□□□□ -0.1
LMX1BO60663 AC018845.2-201ENST00000568326 409 ntBASIC14.44□□□□□ -0.1
LMX1BO60663 PYCR1-207ENST00000577756 1144 ntTSL 2 BASIC14.44□□□□□ -0.1
LMX1BO60663 IFT20-215ENST00000585313 852 ntAPPRIS P4 TSL 3 BASIC14.44□□□□□ -0.1
LMX1BO60663 TUBB4A-209ENST00000598006 565 ntTSL 2 BASIC14.44□□□□□ -0.1
LMX1BO60663 SIGLEC29P-201ENST00000599873 1114 ntBASIC14.44□□□□□ -0.1
LMX1BO60663 GAK-222ENST00000618573 1248 ntTSL 1 (best) BASIC14.44□□□□□ -0.1
LMX1BO60663 HIST1H2AK-201ENST00000618958 393 ntAPPRIS P1 BASIC14.44□□□□□ -0.1
LMX1BO60663 LINC01666-201ENST00000623794 845 ntTSL 5 BASIC14.44□□□□□ -0.1
LMX1BO60663 AL805961.1-202ENST00000641562 540 ntBASIC14.44□□□□□ -0.1
LMX1BO60663 ASB7-202ENST00000343276 1694 ntTSL 1 (best) BASIC14.44□□□□□ -0.1
LMX1BO60663 RGS3-206ENST00000374136 2092 ntTSL 1 (best) BASIC14.44□□□□□ -0.1
LMX1BO60663 POLR2A-201ENST00000572844 2083 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
LMX1BO60663 PRKN-202ENST00000366892 1505 ntTSL 5 BASIC14.44□□□□□ -0.1
LMX1BO60663 KRT85-202ENST00000544265 1387 ntTSL 2 BASIC14.44□□□□□ -0.1
LMX1BO60663 IRF8-203ENST00000563180 1394 ntTSL 1 (best) BASIC14.44□□□□□ -0.1
LMX1BO60663 ZNF382-202ENST00000423582 2657 ntTSL 1 (best) BASIC14.44□□□□□ -0.1
LMX1BO60663 LRRFIP2-205ENST00000421276 2522 ntTSL 2 BASIC14.44□□□□□ -0.1
LMX1BO60663 NPRL3-211ENST00000611875 2881 ntAPPRIS P1 TSL 5 BASIC14.44□□□□□ -0.1
LMX1BO60663 AC141586.1-201ENST00000399702 2748 ntTSL 1 (best) BASIC14.43□□□□□ -0.1
LMX1BO60663 FDX1-201ENST00000260270 3206 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
LMX1BO60663 FAM46A-201ENST00000320172 5609 ntAPPRIS P2 TSL 1 (best) BASIC14.43□□□□□ -0.1
LMX1BO60663 DAPK1-202ENST00000408954 5892 ntAPPRIS P1 TSL 2 BASIC14.43□□□□□ -0.1
LMX1BO60663 BICD1-205ENST00000550207 1328 ntTSL 3 BASIC14.43□□□□□ -0.1
LMX1BO60663 UBR5-207ENST00000520539 10297 ntAPPRIS P3 TSL 1 (best) BASIC14.43□□□□□ -0.1
LMX1BO60663 PDXP-202ENST00000403251 1571 ntTSL 2 BASIC14.43□□□□□ -0.1
LMX1BO60663 AC007495.1-201ENST00000501259 2678 ntTSL 1 (best) BASIC14.43□□□□□ -0.1
LMX1BO60663 CLDN14-204ENST00000399137 1942 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
LMX1BO60663 TMUB2-212ENST00000589785 1918 ntAPPRIS P3 TSL 2 BASIC14.43□□□□□ -0.1
LMX1BO60663 WASHC2C-209ENST00000540872 4519 ntAPPRIS ALT2 TSL 1 (best) BASIC14.43□□□□□ -0.1
LMX1BO60663 PSMC3IP-202ENST00000393795 1416 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
LMX1BO60663 ELF2-201ENST00000358635 3036 ntTSL 1 (best) BASIC14.43□□□□□ -0.1
LMX1BO60663 CD55-204ENST00000367064 2760 ntAPPRIS P3 TSL 1 (best) BASIC14.43□□□□□ -0.1
LMX1BO60663 RBM4-204ENST00000408993 1763 ntAPPRIS P1 TSL 5 BASIC14.43□□□□□ -0.1
LMX1BO60663 C17orf100-201ENST00000542475 1756 ntAPPRIS P1 BASIC14.43□□□□□ -0.1
LMX1BO60663 GPAA1P2-202ENST00000606848 1787 ntBASIC14.43□□□□□ -0.1
LMX1BO60663 VARS2-212ENST00000542001 4064 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
LMX1BO60663 CD82-202ENST00000342935 967 ntTSL 5 BASIC14.43□□□□□ -0.1
LMX1BO60663 BLOC1S2-202ENST00000370372 1249 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
LMX1BO60663 ADARB2-201ENST00000381305 703 ntTSL 2 BASIC14.43□□□□□ -0.1
LMX1BO60663 MIPEPP3-202ENST00000424756 347 ntTSL 3 BASIC14.43□□□□□ -0.1
LMX1BO60663 DARS-AS1-203ENST00000438432 768 ntTSL 3 BASIC14.43□□□□□ -0.1
LMX1BO60663 PRSS29P-201ENST00000440800 595 ntBASIC14.43□□□□□ -0.1
LMX1BO60663 CEND1P1-201ENST00000451006 455 ntBASIC14.43□□□□□ -0.1
LMX1BO60663 C9orf147-204ENST00000463223 863 ntTSL 3 BASIC14.43□□□□□ -0.1
LMX1BO60663 SFTPC-204ENST00000520605 519 ntTSL 3 BASIC14.43□□□□□ -0.1
LMX1BO60663 SFTPC-210ENST00000524255 681 ntTSL 2 BASIC14.43□□□□□ -0.1
LMX1BO60663 FAM118B-206ENST00000529731 1028 ntTSL 5 BASIC14.43□□□□□ -0.1
LMX1BO60663 AP002472.1-201ENST00000577490 586 ntBASIC14.43□□□□□ -0.1
LMX1BO60663 CROCCP3-203ENST00000589964 255 ntTSL 3 BASIC14.43□□□□□ -0.1
LMX1BO60663 ACY1-212ENST00000635797 1294 ntTSL 5 BASIC14.43□□□□□ -0.1
LMX1BO60663 CDK11B-209ENST00000629312 2496 ntTSL 5 BASIC14.43□□□□□ -0.1
LMX1BO60663 C1orf43-201ENST00000350592 1610 ntTSL 1 (best) BASIC14.43□□□□□ -0.1
LMX1BO60663 CLEC18A-209ENST00000615430 2215 ntAPPRIS P2 TSL 5 BASIC14.43□□□□□ -0.1
LMX1BO60663 CLEC18C-211ENST00000618957 2215 ntAPPRIS P2 TSL 5 BASIC14.43□□□□□ -0.1
LMX1BO60663 CLEC18B-205ENST00000619275 2215 ntAPPRIS ALT2 TSL 5 BASIC14.43□□□□□ -0.1
Retrieved 100 of 98,524 protein–RNA pairs in 30 ms