Protein–RNA interactions for Protein: Q8IWP9

CCDC28A, Coiled-coil domain-containing protein 28A, humanhuman

Predictions only

Length 274 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28AQ8IWP9 MINDY1-202ENST00000361738 1961 ntTSL 2 BASIC13.77□□□□□ -0.21
CCDC28AQ8IWP9 LCE2B-201ENST00000368780 612 ntAPPRIS P1 TSL 1 (best) BASIC13.77□□□□□ -0.21
CCDC28AQ8IWP9 SLC25A39-202ENST00000377095 1565 ntAPPRIS ALT1 TSL 1 (best) BASIC13.77□□□□□ -0.21
CCDC28AQ8IWP9 MIR718-201ENST00000390190 70 ntBASIC13.77□□□□□ -0.21
CCDC28AQ8IWP9 CDC42-203ENST00000400259 2274 ntAPPRIS ALT1 TSL 5 BASIC13.77□□□□□ -0.21
CCDC28AQ8IWP9 CALCR-207ENST00000426151 1741 ntAPPRIS P3 TSL 1 (best) BASIC13.77□□□□□ -0.21
CCDC28AQ8IWP9 HAUS8-202ENST00000448593 1545 ntAPPRIS ALT2 TSL 5 BASIC13.77□□□□□ -0.21
CCDC28AQ8IWP9 AC008040.2-201ENST00000461049 708 ntBASIC13.77□□□□□ -0.21
CCDC28AQ8IWP9 GTF2H2C-210ENST00000510979 2952 ntAPPRIS P1 TSL 1 (best) BASIC13.77□□□□□ -0.21
CCDC28AQ8IWP9 CNOT8-224ENST00000523698 862 ntTSL 2 BASIC13.77□□□□□ -0.21
CCDC28AQ8IWP9 GOPC-201ENST00000052569 4590 ntAPPRIS P1 TSL 1 (best) BASIC13.77□□□□□ -0.21
CCDC28AQ8IWP9 ACP2-206ENST00000529444 1719 ntTSL 2 BASIC13.77□□□□□ -0.21
CCDC28AQ8IWP9 AC011462.1-202ENST00000540732 1960 ntAPPRIS P1 TSL 2 BASIC13.77□□□□□ -0.21
CCDC28AQ8IWP9 HLX-AS1-201ENST00000552026 563 ntTSL 4 BASIC13.77□□□□□ -0.21
CCDC28AQ8IWP9 AC027682.2-201ENST00000563083 336 ntTSL 5 BASIC13.77□□□□□ -0.21
CCDC28AQ8IWP9 AC091551.1-201ENST00000590722 1228 ntAPPRIS P1 TSL 2 BASIC13.77□□□□□ -0.21
CCDC28AQ8IWP9 NUP62-212ENST00000597723 1824 ntTSL 1 (best) BASIC13.77□□□□□ -0.21
CCDC28AQ8IWP9 CD177P1-201ENST00000606252 935 ntBASIC13.77□□□□□ -0.21
CCDC28AQ8IWP9 MIR6786-201ENST00000616843 113 ntBASIC13.77□□□□□ -0.21
CCDC28AQ8IWP9 TMEM191C-214ENST00000621561 1337 ntAPPRIS P2 TSL 5 BASIC13.77□□□□□ -0.21
CCDC28AQ8IWP9 ABBA01031674.1-201ENST00000635145 728 ntBASIC13.77□□□□□ -0.21
CCDC28AQ8IWP9 TOB2-201ENST00000327492 4561 ntAPPRIS P1 TSL 1 (best) BASIC13.77□□□□□ -0.21
CCDC28AQ8IWP9 CAPN7-201ENST00000253693 4353 ntAPPRIS P1 TSL 1 (best) BASIC13.77□□□□□ -0.21
CCDC28AQ8IWP9 SLC16A9-202ENST00000395348 4178 ntAPPRIS P1 TSL 5 BASIC13.77□□□□□ -0.21
CCDC28AQ8IWP9 GRM1-203ENST00000361719 6754 ntAPPRIS P3 TSL 5 BASIC13.77□□□□□ -0.21
CCDC28AQ8IWP9 DENND1B-211ENST00000620048 8378 ntAPPRIS ALT2 TSL 5 BASIC13.77□□□□□ -0.21
CCDC28AQ8IWP9 ARID4B-201ENST00000264183 4995 ntAPPRIS P1 TSL 1 (best) BASIC13.76□□□□□ -0.21
CCDC28AQ8IWP9 GSN-215ENST00000545652 2428 ntTSL 2 BASIC13.76□□□□□ -0.21
CCDC28AQ8IWP9 AC136621.1-201ENST00000624017 2304 ntBASIC13.76□□□□□ -0.21
CCDC28AQ8IWP9 PCSK2-205ENST00000536609 2275 ntTSL 2 BASIC13.76□□□□□ -0.21
CCDC28AQ8IWP9 AC013726.1-201ENST00000563747 2285 ntBASIC13.76□□□□□ -0.21
CCDC28AQ8IWP9 SLC38A5-212ENST00000619100 2100 ntTSL 2 BASIC13.76□□□□□ -0.21
CCDC28AQ8IWP9 SLC38A5-214ENST00000622196 2100 ntTSL 5 BASIC13.76□□□□□ -0.21
CCDC28AQ8IWP9 DCUN1D4-202ENST00000381441 4207 ntTSL 1 (best) BASIC13.76□□□□□ -0.21
CCDC28AQ8IWP9 LINC02495-201ENST00000508601 4167 ntTSL 2 BASIC13.76□□□□□ -0.21
CCDC28AQ8IWP9 ZNF485-201ENST00000361807 2054 ntAPPRIS P1 TSL 1 (best) BASIC13.76□□□□□ -0.21
CCDC28AQ8IWP9 C9orf43-202ENST00000374165 2049 ntAPPRIS P1 TSL 1 (best) BASIC13.76□□□□□ -0.21
CCDC28AQ8IWP9 OTP-201ENST00000306422 3669 ntAPPRIS P1 TSL 1 (best) BASIC13.76□□□□□ -0.21
CCDC28AQ8IWP9 PCDHB13-201ENST00000341948 5061 ntAPPRIS P1 BASIC13.76□□□□□ -0.21
CCDC28AQ8IWP9 PRELID3A-203ENST00000587735 1694 ntTSL 1 (best) BASIC13.76□□□□□ -0.21
CCDC28AQ8IWP9 APLP2-203ENST00000338167 3270 ntAPPRIS ALT2 TSL 1 (best) BASIC13.76□□□□□ -0.21
CCDC28AQ8IWP9 ASNS-206ENST00000437628 1638 ntTSL 2 BASIC13.76□□□□□ -0.21
CCDC28AQ8IWP9 PACSIN2-201ENST00000263246 3249 ntAPPRIS P1 TSL 1 (best) BASIC13.76□□□□□ -0.21
CCDC28AQ8IWP9 FAM47E-STBD1-204ENST00000515604 3029 ntAPPRIS P2 TSL 2 BASIC13.76□□□□□ -0.21
CCDC28AQ8IWP9 FAM99A-201ENST00000382167 1432 ntTSL 1 (best) BASIC13.76□□□□□ -0.21
CCDC28AQ8IWP9 RXFP4-201ENST00000368318 1240 ntAPPRIS P1 BASIC13.76□□□□□ -0.21
CCDC28AQ8IWP9 FAM26F-202ENST00000368605 1117 ntAPPRIS P1 TSL 5 BASIC13.76□□□□□ -0.21
CCDC28AQ8IWP9 LGALS7-201ENST00000378626 466 ntAPPRIS P1 TSL 1 (best) BASIC13.76□□□□□ -0.21
CCDC28AQ8IWP9 GPR35-203ENST00000407714 1258 ntAPPRIS P3 TSL 1 (best) BASIC13.76□□□□□ -0.21
CCDC28AQ8IWP9 FAM197Y1-201ENST00000421178 764 ntBASIC13.76□□□□□ -0.21
CCDC28AQ8IWP9 GCSHP5-201ENST00000443090 522 ntBASIC13.76□□□□□ -0.21
CCDC28AQ8IWP9 PSMB5-205ENST00000493471 1117 ntTSL 1 (best) BASIC13.76□□□□□ -0.21
CCDC28AQ8IWP9 ADAMTS19-AS1-201ENST00000502827 786 ntTSL 4 BASIC13.76□□□□□ -0.21
CCDC28AQ8IWP9 AC008771.1-201ENST00000508000 1151 ntTSL 2 BASIC13.76□□□□□ -0.21
CCDC28AQ8IWP9 MOK-228ENST00000523231 1114 ntTSL 1 (best) BASIC13.76□□□□□ -0.21
CCDC28AQ8IWP9 TMEM9B-203ENST00000528117 949 ntTSL 2 BASIC13.76□□□□□ -0.21
CCDC28AQ8IWP9 STAC3-202ENST00000546246 1014 ntTSL 2 BASIC13.76□□□□□ -0.21
CCDC28AQ8IWP9 EFTUD1P1-201ENST00000558187 596 ntTSL 4 BASIC13.76□□□□□ -0.21
CCDC28AQ8IWP9 AC100835.1-201ENST00000565737 498 ntTSL 5 BASIC13.76□□□□□ -0.21
CCDC28AQ8IWP9 TSTD3-202ENST00000636394 336 ntAPPRIS ALT2 TSL 3 BASIC13.76□□□□□ -0.21
CCDC28AQ8IWP9 AP006294.2-201ENST00000641667 209 ntBASIC13.76□□□□□ -0.21
CCDC28AQ8IWP9 CGN-201ENST00000271636 5091 ntAPPRIS P1 TSL 1 (best) BASIC13.76□□□□□ -0.21
CCDC28AQ8IWP9 SPACA9-203ENST00000372136 2536 ntTSL 1 (best) BASIC13.76□□□□□ -0.21
CCDC28AQ8IWP9 ZBTB7B-207ENST00000535420 3777 ntAPPRIS P3 TSL 5 BASIC13.76□□□□□ -0.21
CCDC28AQ8IWP9 FBXO42-201ENST00000375592 6202 ntAPPRIS P1 TSL 1 (best) BASIC13.76□□□□□ -0.21
CCDC28AQ8IWP9 NTN4-201ENST00000343702 3615 ntAPPRIS P1 TSL 1 (best) BASIC13.76□□□□□ -0.21
CCDC28AQ8IWP9 NR3C1-201ENST00000231509 3556 ntAPPRIS ALT1 TSL 1 (best) BASIC13.76□□□□□ -0.21
CCDC28AQ8IWP9 HSDL1-201ENST00000219439 3519 ntAPPRIS P1 TSL 1 (best) BASIC13.76□□□□□ -0.21
CCDC28AQ8IWP9 TMCC3-201ENST00000261226 5877 ntAPPRIS P1 TSL 1 (best) BASIC13.76□□□□□ -0.21
CCDC28AQ8IWP9 MEFV-201ENST00000219596 3499 ntAPPRIS P2 TSL 1 (best) BASIC13.76□□□□□ -0.21
CCDC28AQ8IWP9 CCND3-201ENST00000372987 2233 ntTSL 2 BASIC13.76□□□□□ -0.21
CCDC28AQ8IWP9 CUX1-214ENST00000550008 4350 ntAPPRIS ALT2 TSL 5 BASIC13.76□□□□□ -0.21
CCDC28AQ8IWP9 TRPV4-202ENST00000418703 3247 ntAPPRIS P1 TSL 1 (best) BASIC13.76□□□□□ -0.21
CCDC28AQ8IWP9 LETMD1-203ENST00000418425 2123 ntTSL 2 BASIC13.76□□□□□ -0.21
CCDC28AQ8IWP9 SIGLEC9-202ENST00000440804 1960 ntAPPRIS ALT2 TSL 2 BASIC13.76□□□□□ -0.21
CCDC28AQ8IWP9 CFAP52-202ENST00000396219 1912 ntTSL 2 BASIC13.76□□□□□ -0.21
CCDC28AQ8IWP9 AC005885.1-204ENST00000637885 2885 ntAPPRIS P1 TSL 5 BASIC13.76□□□□□ -0.21
CCDC28AQ8IWP9 ARAP1-203ENST00000393605 4778 ntAPPRIS ALT2 TSL 1 (best) BASIC13.76□□□□□ -0.21
CCDC28AQ8IWP9 NR6A1-205ENST00000487099 7031 ntAPPRIS P3 TSL 1 (best) BASIC13.76□□□□□ -0.21
CCDC28AQ8IWP9 MANBA-202ENST00000505239 2577 ntTSL 2 BASIC13.76□□□□□ -0.21
CCDC28AQ8IWP9 TRMT1-217ENST00000592062 2579 ntAPPRIS P3 TSL 5 BASIC13.76□□□□□ -0.21
CCDC28AQ8IWP9 CYP4F3-201ENST00000221307 5050 ntAPPRIS P3 TSL 1 (best) BASIC13.75□□□□□ -0.21
CCDC28AQ8IWP9 TAB1-202ENST00000331454 1660 ntTSL 1 (best) BASIC13.75□□□□□ -0.21
CCDC28AQ8IWP9 CLCN7-203ENST00000448525 4151 ntTSL 2 BASIC13.75□□□□□ -0.21
CCDC28AQ8IWP9 PTGES2-201ENST00000277462 1614 ntTSL 2 BASIC13.75□□□□□ -0.21
CCDC28AQ8IWP9 SPERT-201ENST00000310521 1613 ntAPPRIS P3 TSL 1 (best) BASIC13.75□□□□□ -0.21
CCDC28AQ8IWP9 APBB1-210ENST00000530885 1626 ntTSL 2 BASIC13.75□□□□□ -0.21
CCDC28AQ8IWP9 IRS1-201ENST00000305123 9705 ntAPPRIS P1 TSL 1 (best) BASIC13.75□□□□□ -0.21
CCDC28AQ8IWP9 UBE2D3-207ENST00000394801 2368 ntAPPRIS ALT1 TSL 1 (best) BASIC13.75□□□□□ -0.21
CCDC28AQ8IWP9 RMDN3-201ENST00000260385 3138 ntAPPRIS P1 TSL 1 (best) BASIC13.75□□□□□ -0.21
CCDC28AQ8IWP9 GTF2IRD1-202ENST00000424337 3077 ntAPPRIS ALT1 TSL 1 (best) BASIC13.75□□□□□ -0.21
CCDC28AQ8IWP9 AGT-201ENST00000366667 2291 ntAPPRIS P1 TSL 1 (best) BASIC13.75□□□□□ -0.21
CCDC28AQ8IWP9 FAM156A-221ENST00000622447 3757 ntAPPRIS P2 TSL 1 (best) BASIC13.75□□□□□ -0.21
CCDC28AQ8IWP9 FBRS-201ENST00000287468 2811 ntAPPRIS P1 TSL 5 BASIC13.75□□□□□ -0.21
CCDC28AQ8IWP9 AP000550.1-201ENST00000420508 4833 ntTSL 1 (best) BASIC13.75□□□□□ -0.21
CCDC28AQ8IWP9 SPRED1-201ENST00000299084 7780 ntAPPRIS P1 TSL 1 (best) BASIC13.75□□□□□ -0.21
CCDC28AQ8IWP9 NRROS-201ENST00000328557 2564 ntAPPRIS P1 TSL 1 (best) BASIC13.75□□□□□ -0.21
CCDC28AQ8IWP9 YPEL3-201ENST00000398838 935 ntAPPRIS P1 TSL 1 (best) BASIC13.75□□□□□ -0.21
CCDC28AQ8IWP9 CTNNBIP1-204ENST00000400904 1206 ntAPPRIS P1 TSL 1 (best) BASIC13.75□□□□□ -0.21
CCDC28AQ8IWP9 SAPCD2P4-201ENST00000424595 1171 ntBASIC13.75□□□□□ -0.21
Retrieved 100 of 98,524 protein–RNA pairs in 45.4 ms