Protein–RNA interactions for Protein: P35244

RPA3, Replication protein A 14 kDa subunit, humanhuman

Predicted RBP Predictions only

Length 121 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RPA3P35244 CUTA-210ENST00000488034 769 ntAPPRIS ALT1 TSL 2 BASIC16.63■□□□□ 0.25
RPA3P35244 FAU-209ENST00000531743 697 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
RPA3P35244 SPINT1-AS1-203ENST00000565315 629 ntTSL 2 BASIC16.63■□□□□ 0.25
RPA3P35244 AP001005.1-201ENST00000571755 1248 ntBASIC16.63■□□□□ 0.25
RPA3P35244 IER2-202ENST00000587885 1291 ntAPPRIS P1 TSL 3 BASIC16.63■□□□□ 0.25
RPA3P35244 ANO2-212ENST00000612575 1087 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
RPA3P35244 MIR1199-201ENST00000621445 119 ntBASIC16.63■□□□□ 0.25
RPA3P35244 AC008735.5-201ENST00000623544 497 ntBASIC16.63■□□□□ 0.25
RPA3P35244 TLE3-202ENST00000440567 2657 ntTSL 2 BASIC16.63■□□□□ 0.25
RPA3P35244 GMPPA-204ENST00000373908 1501 ntAPPRIS P1 TSL 5 BASIC16.63■□□□□ 0.25
RPA3P35244 PANK2-209ENST00000621507 1763 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
RPA3P35244 RIMS1-213ENST00000517960 4428 ntTSL 5 BASIC16.63■□□□□ 0.25
RPA3P35244 RIMS1-215ENST00000520567 4442 ntTSL 5 BASIC16.63■□□□□ 0.25
RPA3P35244 PLCB1-201ENST00000338037 7092 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
RPA3P35244 MLKL-202ENST00000308807 2523 ntAPPRIS P1 TSL 2 BASIC16.63■□□□□ 0.25
RPA3P35244 KCNQ2-204ENST00000359125 3253 ntAPPRIS P4 TSL 1 (best) BASIC16.63■□□□□ 0.25
RPA3P35244 PLVAP-201ENST00000252590 2305 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
RPA3P35244 TOP3BP1-201ENST00000420768 1380 ntBASIC16.63■□□□□ 0.25
RPA3P35244 RPAP3-203ENST00000432584 2133 ntTSL 2 BASIC16.63■□□□□ 0.25
RPA3P35244 CABP1-204ENST00000453000 1857 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
RPA3P35244 MEIS3-210ENST00000561096 1883 ntAPPRIS ALT2 TSL 2 BASIC16.63■□□□□ 0.25
RPA3P35244 ZNF662-201ENST00000328199 3186 ntAPPRIS P1 TSL 5 BASIC16.63■□□□□ 0.25
RPA3P35244 RPRD1A-209ENST00000590898 1945 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
RPA3P35244 ACTRT2-201ENST00000378404 1421 ntAPPRIS P1 BASIC16.62■□□□□ 0.25
RPA3P35244 POM121-203ENST00000434423 3750 ntAPPRIS ALT2 TSL 5 BASIC16.62■□□□□ 0.25
RPA3P35244 TBC1D9B-201ENST00000355235 5119 ntAPPRIS P3 TSL 5 BASIC16.62■□□□□ 0.25
RPA3P35244 ARMC5-204ENST00000538189 3017 ntAPPRIS ALT2 TSL 2 BASIC16.62■□□□□ 0.25
RPA3P35244 KCNT1-214ENST00000631073 3948 ntAPPRIS ALT2 TSL 5 BASIC16.62■□□□□ 0.25
RPA3P35244 AC073264.3-201ENST00000636941 2577 ntAPPRIS P1 TSL 5 BASIC16.62■□□□□ 0.25
RPA3P35244 ATP2C1-224ENST00000533801 3690 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
RPA3P35244 SSB-202ENST00000409333 1782 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
RPA3P35244 DNAJB8-AS1-201ENST00000471626 1798 ntTSL 2 BASIC16.62■□□□□ 0.25
RPA3P35244 ARNTL2-208ENST00000544915 6785 ntAPPRIS ALT2 TSL 5 BASIC16.62■□□□□ 0.25
RPA3P35244 C19orf48-201ENST00000345523 1503 ntAPPRIS P1 TSL 2 BASIC16.62■□□□□ 0.25
RPA3P35244 PARVB-210ENST00000619710 1530 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
RPA3P35244 TMED7-TICAM2-202ENST00000333314 3453 ntTSL 2 BASIC16.62■□□□□ 0.25
RPA3P35244 KCNQ2-209ENST00000625514 2925 ntTSL 5 BASIC16.62■□□□□ 0.25
RPA3P35244 ASTN2-201ENST00000288520 2356 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
RPA3P35244 SRCIN1-215ENST00000621492 4644 ntAPPRIS ALT2 TSL 5 BASIC16.62■□□□□ 0.25
RPA3P35244 ARHGAP45-212ENST00000590577 3218 ntTSL 2 BASIC16.62■□□□□ 0.25
RPA3P35244 LCE1F-201ENST00000334371 357 ntAPPRIS P1 BASIC16.62■□□□□ 0.25
RPA3P35244 CD1E-209ENST00000368164 869 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
RPA3P35244 RMDN1-202ENST00000430676 1106 ntTSL 2 BASIC16.62■□□□□ 0.25
RPA3P35244 AC021066.1-201ENST00000549788 647 ntTSL 3 BASIC16.62■□□□□ 0.25
RPA3P35244 TMEM106C-214ENST00000550161 976 ntTSL 3 BASIC16.62■□□□□ 0.25
RPA3P35244 AL121820.2-201ENST00000556301 279 ntTSL 2 BASIC16.62■□□□□ 0.25
RPA3P35244 AC105339.3-201ENST00000560043 636 ntBASIC16.62■□□□□ 0.25
RPA3P35244 YPEL3-209ENST00000566595 796 ntAPPRIS P1 TSL 2 BASIC16.62■□□□□ 0.25
RPA3P35244 SLC25A6P4-201ENST00000586535 553 ntBASIC16.62■□□□□ 0.25
RPA3P35244 FAM215A-202ENST00000632077 792 ntBASIC16.62■□□□□ 0.25
RPA3P35244 BEND4-201ENST00000502486 8765 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
RPA3P35244 RABGAP1L-201ENST00000251507 2899 ntAPPRIS P1 TSL 2 BASIC16.62■□□□□ 0.25
RPA3P35244 MFGE8-215ENST00000566497 1689 ntAPPRIS P1 TSL 5 BASIC16.62■□□□□ 0.25
RPA3P35244 KRT85-202ENST00000544265 1387 ntTSL 2 BASIC16.62■□□□□ 0.25
RPA3P35244 ELFN1-201ENST00000424383 3845 ntAPPRIS P1 TSL 5 BASIC16.62■□□□□ 0.25
RPA3P35244 ARHGAP35-201ENST00000404338 8889 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
RPA3P35244 CDK2-204ENST00000553376 1725 ntTSL 5 BASIC16.62■□□□□ 0.25
RPA3P35244 KRT8P39-201ENST00000396270 1433 ntBASIC16.62■□□□□ 0.25
RPA3P35244 C16orf89-202ENST00000472572 1444 ntAPPRIS ALT2 TSL 1 (best) BASIC16.62■□□□□ 0.25
RPA3P35244 SNX6-202ENST00000396526 3398 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
RPA3P35244 RANBP3-201ENST00000034275 1762 ntAPPRIS ALT2 TSL 1 (best) BASIC16.61■□□□□ 0.25
RPA3P35244 GPN3-202ENST00000537466 1491 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
RPA3P35244 PLEKHN1-201ENST00000379407 2194 ntAPPRIS ALT2 TSL 1 (best) BASIC16.61■□□□□ 0.25
RPA3P35244 TPT1-AS1-215ENST00000522673 1519 ntTSL 5 BASIC16.61■□□□□ 0.25
RPA3P35244 DDHD1-202ENST00000357758 5603 ntAPPRIS P3 TSL 1 (best) BASIC16.61■□□□□ 0.25
RPA3P35244 USH1C-202ENST00000318024 2237 ntAPPRIS ALT2 TSL 1 (best) BASIC16.61■□□□□ 0.25
RPA3P35244 PAXBP1-202ENST00000331923 3995 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
RPA3P35244 PPP6R1-201ENST00000412770 3961 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
RPA3P35244 RTL6-201ENST00000341255 5495 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
RPA3P35244 YY1AP1-210ENST00000368339 3073 ntAPPRIS ALT2 TSL 2 BASIC16.61■□□□□ 0.25
RPA3P35244 HBQ1-201ENST00000199708 536 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
RPA3P35244 DHDH-201ENST00000221403 1081 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
RPA3P35244 EXOSC3-202ENST00000396521 768 ntTSL 2 BASIC16.61■□□□□ 0.25
RPA3P35244 ELK2BP-201ENST00000415014 1224 ntBASIC16.61■□□□□ 0.25
RPA3P35244 TCTN1-208ENST00000471804 718 ntTSL 3 BASIC16.61■□□□□ 0.25
RPA3P35244 PENK-208ENST00000523051 772 ntTSL 5 BASIC16.61■□□□□ 0.25
RPA3P35244 AP000688.1-201ENST00000535199 1221 ntTSL 2 BASIC16.61■□□□□ 0.25
RPA3P35244 PRKN-208ENST00000610470 531 ntTSL 2 BASIC16.61■□□□□ 0.25
RPA3P35244 AC018529.2-201ENST00000612024 828 ntTSL 4 BASIC16.61■□□□□ 0.25
RPA3P35244 PRKN-209ENST00000612485 225 ntTSL 5 BASIC16.61■□□□□ 0.25
RPA3P35244 AC092902.2-205ENST00000622381 394 ntTSL 5 BASIC16.61■□□□□ 0.25
RPA3P35244 ABBA01031661.1-201ENST00000634362 1253 ntBASIC16.61■□□□□ 0.25
RPA3P35244 ADORA1-209ENST00000640524 653 ntTSL 5 BASIC16.61■□□□□ 0.25
RPA3P35244 LRP8-202ENST00000347547 2382 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
RPA3P35244 PPT1-215ENST00000641471 2368 ntBASIC16.61■□□□□ 0.25
RPA3P35244 PACS1-209ENST00000529757 1688 ntAPPRIS ALT2 TSL 1 (best) BASIC16.61■□□□□ 0.25
RPA3P35244 PDCL3-201ENST00000264254 1337 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
RPA3P35244 ABHD16A-201ENST00000395952 2103 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
RPA3P35244 TMEM139-205ENST00000410004 2114 ntAPPRIS P1 TSL 2 BASIC16.61■□□□□ 0.25
RPA3P35244 ZFP1-208ENST00000568079 1426 ntTSL 2 BASIC16.61■□□□□ 0.25
RPA3P35244 CBARP-204ENST00000590083 4261 ntAPPRIS P2 TSL 1 (best) BASIC16.61■□□□□ 0.25
RPA3P35244 CDR2L-201ENST00000337231 3536 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
RPA3P35244 TNRC18P2-201ENST00000417666 2714 ntBASIC16.61■□□□□ 0.25
RPA3P35244 DMTN-202ENST00000358242 2772 ntTSL 5 BASIC16.6■□□□□ 0.25
RPA3P35244 DPF3-204ENST00000546183 1514 ntTSL 2 BASIC16.6■□□□□ 0.25
RPA3P35244 HTR1B-201ENST00000369947 2021 ntAPPRIS P1 BASIC16.6■□□□□ 0.25
RPA3P35244 AC006504.4-201ENST00000592118 1568 ntBASIC16.6■□□□□ 0.25
RPA3P35244 RUNX1-201ENST00000300305 6222 ntAPPRIS P3 TSL 1 (best) BASIC16.6■□□□□ 0.25
RPA3P35244 RASGEF1C-206ENST00000522500 2055 ntTSL 2 BASIC16.6■□□□□ 0.25
RPA3P35244 MC1R-202ENST00000555147 3099 ntAPPRIS P1 BASIC16.6■□□□□ 0.25
Retrieved 100 of 98,524 protein–RNA pairs in 29.5 ms