Protein–RNA interactions for Protein: P28288

ABCD3, ATP-binding cassette sub-family D member 3, humanhuman

Predictions only

Length 659 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ABCD3P28288 SNAI2-201ENST00000020945 2010 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
ABCD3P28288 PTCH1-201ENST00000331920 8057 ntAPPRIS P1 TSL 5 BASIC15.11■□□□□ 0.01
ABCD3P28288 AL662844.4-201ENST00000606367 2838 ntBASIC15.11■□□□□ 0.01
ABCD3P28288 CNTNAP3B-201ENST00000276974 3240 ntTSL 5 BASIC15.11■□□□□ 0.01
ABCD3P28288 PPP1R27-201ENST00000330261 782 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
ABCD3P28288 PRORY-201ENST00000382764 878 ntAPPRIS P1 TSL 5 BASIC15.11■□□□□ 0.01
ABCD3P28288 CHMP3-203ENST00000409225 1099 ntTSL 2 BASIC15.11■□□□□ 0.01
ABCD3P28288 LINC01264-201ENST00000431395 500 ntTSL 3 BASIC15.11■□□□□ 0.01
ABCD3P28288 MCF2L-AS1-201ENST00000446789 712 ntTSL 3 BASIC15.11■□□□□ 0.01
ABCD3P28288 AC009093.7-201ENST00000623853 1223 ntBASIC15.11■□□□□ 0.01
ABCD3P28288 CABP1-204ENST00000453000 1857 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
ABCD3P28288 U82695.1-201ENST00000635752 1889 ntBASIC15.11■□□□□ 0.01
ABCD3P28288 PDE1C-201ENST00000321453 2898 ntAPPRIS ALT1 TSL 2 BASIC15.11■□□□□ 0.01
ABCD3P28288 NFE2L3-201ENST00000056233 3686 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
ABCD3P28288 VAV2-202ENST00000371851 5101 ntAPPRIS ALT2 TSL 5 BASIC15.11■□□□□ 0.01
ABCD3P28288 SOX30-202ENST00000311371 2716 ntAPPRIS ALT2 TSL 1 (best) BASIC15.11■□□□□ 0.01
ABCD3P28288 ADRA1A-204ENST00000380573 2548 ntAPPRIS P1 TSL 2 BASIC15.11■□□□□ 0.01
ABCD3P28288 LAD1-201ENST00000367313 2336 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
ABCD3P28288 CLPTM1-203ENST00000546079 2342 ntTSL 2 BASIC15.11■□□□□ 0.01
ABCD3P28288 HDAC8-206ENST00000373571 2133 ntTSL 5 BASIC15.11■□□□□ 0.01
ABCD3P28288 NFATC1-208ENST00000586434 2103 ntAPPRIS ALT2 TSL 1 (best) BASIC15.11■□□□□ 0.01
ABCD3P28288 SRPK3-201ENST00000370100 1717 ntAPPRIS ALT2 TSL 5 BASIC15.11■□□□□ 0.01
ABCD3P28288 MAP3K9-201ENST00000381250 4025 ntAPPRIS ALT2 TSL 5 BASIC15.11■□□□□ 0.01
ABCD3P28288 LINC01979-201ENST00000576738 5271 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
ABCD3P28288 DOK5-201ENST00000262593 1963 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
ABCD3P28288 EIF2B4-212ENST00000622434 1771 ntTSL 5 BASIC15.11■□□□□ 0.01
ABCD3P28288 AC105339.1-201ENST00000440089 1362 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
ABCD3P28288 EIF5A-206ENST00000571955 1366 ntAPPRIS P1 TSL 5 BASIC15.11■□□□□ 0.01
ABCD3P28288 RELA-227ENST00000615805 2236 ntTSL 5 BASIC15.11■□□□□ 0.01
ABCD3P28288 SEMA5B-202ENST00000357599 4792 ntAPPRIS P3 TSL 1 (best) BASIC15.11■□□□□ 0.01
ABCD3P28288 ZFAND6-201ENST00000261749 1814 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
ABCD3P28288 SEPT8-205ENST00000378701 1817 ntTSL 2 BASIC15.1■□□□□ 0.01
ABCD3P28288 CACNB3-203ENST00000540990 1814 ntTSL 2 BASIC15.1■□□□□ 0.01
ABCD3P28288 AP001372.2-201ENST00000526036 2493 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
ABCD3P28288 OTUB1-202ENST00000422031 2297 ntAPPRIS ALT1 TSL 5 BASIC15.1■□□□□ 0.01
ABCD3P28288 ITPK1-210ENST00000556603 3174 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
ABCD3P28288 GRAMD1A-202ENST00000411896 2523 ntAPPRIS ALT2 TSL 2 BASIC15.1■□□□□ 0.01
ABCD3P28288 PCNP-201ENST00000265260 2342 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
ABCD3P28288 DDX42-208ENST00000578681 4337 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
ABCD3P28288 IFT140-203ENST00000426508 5270 ntAPPRIS P1 TSL 5 BASIC15.1■□□□□ 0.01
ABCD3P28288 FAM135A-205ENST00000418814 6415 ntTSL 5 BASIC15.1■□□□□ 0.01
ABCD3P28288 HTR3E-201ENST00000335304 1912 ntAPPRIS P3 TSL 1 (best) BASIC15.1■□□□□ 0.01
ABCD3P28288 ACE-204ENST00000428043 5120 ntTSL 2 BASIC15.1■□□□□ 0.01
ABCD3P28288 ARID1A-205ENST00000457599 6268 ntAPPRIS ALT2 TSL 5 BASIC15.1■□□□□ 0.01
ABCD3P28288 HNRNPUL2-BSCL2-201ENST00000403734 4001 ntAPPRIS P1 TSL 2 BASIC15.1■□□□□ 0.01
ABCD3P28288 IQCE-212ENST00000476665 2400 ntAPPRIS ALT2 TSL 2 BASIC15.1■□□□□ 0.01
ABCD3P28288 LIFR-202ENST00000453190 4253 ntAPPRIS P1 TSL 2 BASIC15.1■□□□□ 0.01
ABCD3P28288 ZNF786-201ENST00000316286 3144 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
ABCD3P28288 LIM2-201ENST00000221973 983 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
ABCD3P28288 TMEM270-201ENST00000320531 854 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
ABCD3P28288 PP14571-201ENST00000404327 934 ntTSL 2 BASIC15.1■□□□□ 0.01
ABCD3P28288 HHATL-AS1-201ENST00000423165 557 ntTSL 4 BASIC15.1■□□□□ 0.01
ABCD3P28288 AL121832.1-203ENST00000433121 475 ntTSL 3 BASIC15.1■□□□□ 0.01
ABCD3P28288 AC098859.1-201ENST00000502915 1238 ntBASIC15.1■□□□□ 0.01
ABCD3P28288 AGGF1-204ENST00000506806 1142 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
ABCD3P28288 AC024230.1-201ENST00000511431 889 ntTSL 3 BASIC15.1■□□□□ 0.01
ABCD3P28288 VASH2-211ENST00000517399 1068 ntAPPRIS ALT1 TSL 1 (best) BASIC15.1■□□□□ 0.01
ABCD3P28288 AC108010.1-201ENST00000605862 1107 ntTSL 5 BASIC15.1■□□□□ 0.01
ABCD3P28288 SPTSSB-204ENST00000617024 1292 ntBASIC15.1■□□□□ 0.01
ABCD3P28288 AL732314.4-201ENST00000627627 515 ntTSL 4 BASIC15.1■□□□□ 0.01
ABCD3P28288 CTSD-213ENST00000637915 1982 ntAPPRIS ALT2 TSL 5 BASIC15.1■□□□□ 0.01
ABCD3P28288 AL589702.1-201ENST00000641229 1509 ntBASIC15.1■□□□□ 0.01
ABCD3P28288 CHRNE-201ENST00000293780 2455 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
ABCD3P28288 AQP1-204ENST00000441328 2487 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
ABCD3P28288 IKBKE-204ENST00000584998 2487 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
ABCD3P28288 PHACTR3-204ENST00000371015 2728 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
ABCD3P28288 ANKRD26P3-201ENST00000454044 2748 ntBASIC15.1■□□□□ 0.01
ABCD3P28288 CLPTM1L-216ENST00000630539 2032 ntTSL 5 BASIC15.1■□□□□ 0.01
ABCD3P28288 CASK-203ENST00000378163 4411 ntAPPRIS ALT1 TSL 5 BASIC15.1■□□□□ 0.01
ABCD3P28288 PEX6-202ENST00000304611 3478 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
ABCD3P28288 ZNF514-201ENST00000295208 3011 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
ABCD3P28288 MYCL-203ENST00000397332 3256 ntAPPRIS ALT2 TSL 1 (best) BASIC15.1■□□□□ 0.01
ABCD3P28288 PLEKHA8P1-201ENST00000256692 1839 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
ABCD3P28288 CDK4-201ENST00000257904 2076 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
ABCD3P28288 SH3YL1-206ENST00000405430 2064 ntAPPRIS P1 TSL 5 BASIC15.1■□□□□ 0.01
ABCD3P28288 MMP15-201ENST00000219271 4250 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
ABCD3P28288 FMNL1-201ENST00000328118 2330 ntTSL 2 BASIC15.1■□□□□ 0.01
ABCD3P28288 KLF10-201ENST00000285407 3097 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
ABCD3P28288 EEFSEC-202ENST00000483457 1859 ntTSL 5 BASIC15.1■□□□□ 0.01
ABCD3P28288 FSTL3-206ENST00000592947 2144 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
ABCD3P28288 AC092364.2-201ENST00000596710 2692 ntBASIC15.1■□□□□ 0.01
ABCD3P28288 PI16-201ENST00000373674 2190 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
ABCD3P28288 PRKCSH-205ENST00000587327 2189 ntAPPRIS ALT2 TSL 2 BASIC15.09■□□□□ 0.01
ABCD3P28288 CCDC116-203ENST00000607942 1913 ntAPPRIS ALT2 TSL 2 BASIC15.09■□□□□ 0.01
ABCD3P28288 GPER1-206ENST00000617001 1900 ntTSL 5 BASIC15.09■□□□□ 0.01
ABCD3P28288 CFAP43-203ENST00000369719 1434 ntTSL 2 BASIC15.09■□□□□ 0.01
ABCD3P28288 PRR30-202ENST00000432962 1440 ntAPPRIS ALT2 TSL 3 BASIC15.09■□□□□ 0.01
ABCD3P28288 TUBB8-201ENST00000561967 1413 ntTSL 5 BASIC15.09■□□□□ 0.01
ABCD3P28288 CPNE6-201ENST00000397016 2235 ntAPPRIS P1 TSL 2 BASIC15.09■□□□□ 0.01
ABCD3P28288 CPNE6-203ENST00000537691 2233 ntTSL 2 BASIC15.09■□□□□ 0.01
ABCD3P28288 NRP1-203ENST00000374821 1988 ntTSL 1 (best) BASIC15.09■□□□□ 0.01
ABCD3P28288 TMUB2-204ENST00000538716 1953 ntAPPRIS ALT1 TSL 2 BASIC15.09■□□□□ 0.01
ABCD3P28288 PRR5-203ENST00000403581 2279 ntTSL 2 BASIC15.09■□□□□ 0.01
ABCD3P28288 NETO2-202ENST00000562435 7481 ntAPPRIS P3 TSL 1 (best) BASIC15.09■□□□□ 0.01
ABCD3P28288 CMTM3-202ENST00000424011 2330 ntAPPRIS P1 TSL 2 BASIC15.09■□□□□ 0.01
ABCD3P28288 FOXA1-201ENST00000250448 2862 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
ABCD3P28288 PIGP-207ENST00000464265 3437 ntTSL 1 (best) BASIC15.09■□□□□ 0.01
ABCD3P28288 NDUFV1-216ENST00000529927 1503 ntAPPRIS ALT1 TSL 1 (best) BASIC15.09■□□□□ 0.01
ABCD3P28288 CCNL1-201ENST00000295925 549 ntTSL 1 (best) BASIC15.09■□□□□ 0.01
ABCD3P28288 C11orf88-201ENST00000332814 795 ntAPPRIS P4 TSL 5 BASIC15.09■□□□□ 0.01
Retrieved 100 of 98,524 protein–RNA pairs in 28.6 ms