Protein–RNA interactions for Protein: Q96DZ5

CLIP3, CAP-Gly domain-containing linker protein 3, humanhuman

Predictions only

Length 547 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP3Q96DZ5 C16orf89-201ENST00000315997 1872 ntAPPRIS P3 TSL 1 (best) BASIC15.92■□□□□ 0.14
CLIP3Q96DZ5 GLOD4-203ENST00000536578 2497 ntTSL 5 BASIC15.92■□□□□ 0.14
CLIP3Q96DZ5 MYC-202ENST00000377970 2351 ntAPPRIS ALT2 TSL 1 (best) BASIC15.92■□□□□ 0.14
CLIP3Q96DZ5 TSPAN4-205ENST00000397406 1426 ntAPPRIS P1 TSL 1 (best) BASIC15.92■□□□□ 0.14
CLIP3Q96DZ5 INPP5K-204ENST00000421807 2988 ntAPPRIS P1 TSL 1 (best) BASIC15.92■□□□□ 0.14
CLIP3Q96DZ5 F12-201ENST00000253496 2049 ntAPPRIS P1 TSL 1 (best) BASIC15.92■□□□□ 0.14
CLIP3Q96DZ5 PBX1-219ENST00000560641 3225 ntTSL 5 BASIC15.92■□□□□ 0.14
CLIP3Q96DZ5 TNIP1-211ENST00000521591 2274 ntAPPRIS P3 TSL 1 (best) BASIC15.92■□□□□ 0.14
CLIP3Q96DZ5 WT1-201ENST00000332351 3122 ntAPPRIS ALT2 TSL 1 (best) BASIC15.92■□□□□ 0.14
CLIP3Q96DZ5 CXorf67-201ENST00000342995 1929 ntAPPRIS P1 BASIC15.92■□□□□ 0.14
CLIP3Q96DZ5 ULBP2-201ENST00000367351 1349 ntAPPRIS P1 TSL 1 (best) BASIC15.92■□□□□ 0.14
CLIP3Q96DZ5 FOXRED2-203ENST00000397223 2184 ntAPPRIS P1 TSL 1 (best) BASIC15.92■□□□□ 0.14
CLIP3Q96DZ5 AC119396.1-201ENST00000576789 1558 ntAPPRIS P1 TSL 5 BASIC15.92■□□□□ 0.14
CLIP3Q96DZ5 CERCAM-213ENST00000612334 1554 ntAPPRIS ALT2 TSL 5 BASIC15.92■□□□□ 0.14
CLIP3Q96DZ5 TPM1-205ENST00000357980 1800 ntTSL 2 BASIC15.91■□□□□ 0.14
CLIP3Q96DZ5 CLEC18B-206ENST00000620745 1847 ntTSL 5 BASIC15.91■□□□□ 0.14
CLIP3Q96DZ5 SLC9A7-201ENST00000328306 3838 ntAPPRIS P3 TSL 1 (best) BASIC15.91■□□□□ 0.14
CLIP3Q96DZ5 LAT2-204ENST00000398475 2453 ntAPPRIS P2 TSL 1 (best) BASIC15.91■□□□□ 0.14
CLIP3Q96DZ5 SPINT1-202ENST00000562057 2456 ntAPPRIS ALT2 TSL 1 (best) BASIC15.91■□□□□ 0.14
CLIP3Q96DZ5 IFT140-201ENST00000361339 2987 ntTSL 1 (best) BASIC15.91■□□□□ 0.14
CLIP3Q96DZ5 RPGRIP1-210ENST00000556336 2955 ntTSL 5 BASIC15.91■□□□□ 0.14
CLIP3Q96DZ5 PRPF40B-201ENST00000261897 3602 ntAPPRIS ALT2 TSL 1 (best) BASIC15.91■□□□□ 0.14
CLIP3Q96DZ5 SLC10A3-203ENST00000393586 1893 ntTSL 5 BASIC15.91■□□□□ 0.14
CLIP3Q96DZ5 LILRP2-201ENST00000413439 2127 ntTSL 1 (best) BASIC15.91■□□□□ 0.14
CLIP3Q96DZ5 AC068944.1-201ENST00000514855 1604 ntTSL 2 BASIC15.91■□□□□ 0.14
CLIP3Q96DZ5 YAP1-211ENST00000629586 1365 ntTSL 5 BASIC15.91■□□□□ 0.14
CLIP3Q96DZ5 ZFYVE28-208ENST00000511071 3273 ntAPPRIS ALT2 TSL 5 BASIC15.91■□□□□ 0.14
CLIP3Q96DZ5 BTBD3-201ENST00000254977 4686 ntAPPRIS ALT1 TSL 2 BASIC15.91■□□□□ 0.14
CLIP3Q96DZ5 CD72-204ENST00000396757 2035 ntAPPRIS P2 TSL 5 BASIC15.91■□□□□ 0.14
CLIP3Q96DZ5 LOXL3-205ENST00000409986 2005 ntTSL 2 BASIC15.91■□□□□ 0.14
CLIP3Q96DZ5 DAGLB-202ENST00000425398 2044 ntTSL 2 BASIC15.91■□□□□ 0.14
CLIP3Q96DZ5 AC092068.3-201ENST00000587894 2016 ntBASIC15.91■□□□□ 0.14
CLIP3Q96DZ5 NFE2-202ENST00000435572 1762 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
CLIP3Q96DZ5 CTD-3080P12.3-203ENST00000514376 1757 ntTSL 1 (best) BASIC15.91■□□□□ 0.14
CLIP3Q96DZ5 LINC01148-201ENST00000557527 1763 ntTSL 1 (best) BASIC15.91■□□□□ 0.14
CLIP3Q96DZ5 TMEM44-201ENST00000330115 1278 ntTSL 1 (best) BASIC15.91■□□□□ 0.14
CLIP3Q96DZ5 TNNC2-202ENST00000372557 780 ntTSL 3 BASIC15.91■□□□□ 0.14
CLIP3Q96DZ5 RNU1-129P-201ENST00000384064 167 ntBASIC15.91■□□□□ 0.14
CLIP3Q96DZ5 HNRNPFP1-201ENST00000391730 1133 ntBASIC15.91■□□□□ 0.14
CLIP3Q96DZ5 GOSR2-202ENST00000393456 788 ntTSL 3 BASIC15.91■□□□□ 0.14
CLIP3Q96DZ5 LINC00404-201ENST00000418660 428 ntTSL 2 BASIC15.91■□□□□ 0.14
CLIP3Q96DZ5 AC092474.2-201ENST00000424288 719 ntBASIC15.91■□□□□ 0.14
CLIP3Q96DZ5 KRT18P32-201ENST00000424695 1287 ntBASIC15.91■□□□□ 0.14
CLIP3Q96DZ5 AL121832.1-203ENST00000433121 475 ntTSL 3 BASIC15.91■□□□□ 0.14
CLIP3Q96DZ5 OST4-202ENST00000447619 458 ntAPPRIS P1 TSL 2 BASIC15.91■□□□□ 0.14
CLIP3Q96DZ5 SLC25A36-204ENST00000453248 1040 ntTSL 2 BASIC15.91■□□□□ 0.14
CLIP3Q96DZ5 HLA-J-203ENST00000494367 1087 ntBASIC15.91■□□□□ 0.14
CLIP3Q96DZ5 SWI5-205ENST00000495313 466 ntAPPRIS ALT2 TSL 3 BASIC15.91■□□□□ 0.14
CLIP3Q96DZ5 KRTAP5-9-201ENST00000528743 1136 ntAPPRIS P1 BASIC15.91■□□□□ 0.14
CLIP3Q96DZ5 AC109635.5-201ENST00000533593 962 ntBASIC15.91■□□□□ 0.14
CLIP3Q96DZ5 PXN-AS1-201ENST00000535200 1170 ntTSL 2 BASIC15.91■□□□□ 0.14
CLIP3Q96DZ5 GALNT9-208ENST00000541995 1001 ntTSL 1 (best) BASIC15.91■□□□□ 0.14
CLIP3Q96DZ5 AC009053.3-201ENST00000567148 574 ntTSL 4 BASIC15.91■□□□□ 0.14
CLIP3Q96DZ5 U1.21-201ENST00000580816 167 ntBASIC15.91■□□□□ 0.14
CLIP3Q96DZ5 CIRBP-204ENST00000585630 870 ntAPPRIS P3 TSL 3 BASIC15.91■□□□□ 0.14
CLIP3Q96DZ5 TMEM265-201ENST00000615541 995 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
CLIP3Q96DZ5 CU104787.1-201ENST00000624155 288 ntTSL 1 (best) BASIC15.91■□□□□ 0.14
CLIP3Q96DZ5 AC110491.3-201ENST00000631985 460 ntTSL 2 BASIC15.91■□□□□ 0.14
CLIP3Q96DZ5 NCOA1-205ENST00000406961 7289 ntAPPRIS P4 TSL 5 BASIC15.91■□□□□ 0.14
CLIP3Q96DZ5 TMEM127-201ENST00000258439 6266 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
CLIP3Q96DZ5 ACSS2-202ENST00000360596 3065 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
CLIP3Q96DZ5 MOB3B-201ENST00000262244 6454 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
CLIP3Q96DZ5 RABGGTA-201ENST00000216840 2088 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
CLIP3Q96DZ5 SLC2A13-201ENST00000280871 7003 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
CLIP3Q96DZ5 ABTB1-202ENST00000453791 1961 ntTSL 1 (best) BASIC15.91■□□□□ 0.14
CLIP3Q96DZ5 MRFAP1-205ENST00000617365 2112 ntTSL 5 BASIC15.91■□□□□ 0.14
CLIP3Q96DZ5 TRIM39-201ENST00000376656 3338 ntAPPRIS P4 TSL 2 BASIC15.91■□□□□ 0.14
CLIP3Q96DZ5 NFATC4-203ENST00000422617 5491 ntAPPRIS ALT2 TSL 1 (best) BASIC15.91■□□□□ 0.14
CLIP3Q96DZ5 AC104581.4-201ENST00000623126 3052 ntBASIC15.91■□□□□ 0.14
CLIP3Q96DZ5 RCC1-202ENST00000373832 2424 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
CLIP3Q96DZ5 LSP1-202ENST00000381775 2016 ntAPPRIS ALT2 TSL 2 BASIC15.9■□□□□ 0.14
CLIP3Q96DZ5 RANBP3-201ENST00000034275 1762 ntAPPRIS ALT2 TSL 1 (best) BASIC15.9■□□□□ 0.14
CLIP3Q96DZ5 SELENBP1-201ENST00000368868 1752 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
CLIP3Q96DZ5 VSIG10L2-202ENST00000638636 2304 ntAPPRIS P1 TSL 5 BASIC15.9■□□□□ 0.14
CLIP3Q96DZ5 ITFG1-201ENST00000320640 3400 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
CLIP3Q96DZ5 MMP25-201ENST00000336577 3554 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
CLIP3Q96DZ5 NUS1-201ENST00000368494 4676 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
CLIP3Q96DZ5 STXBP3-201ENST00000370008 2478 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
CLIP3Q96DZ5 PRX-201ENST00000291825 5502 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
CLIP3Q96DZ5 ILVBL-209ENST00000534378 2067 ntTSL 5 BASIC15.9■□□□□ 0.14
CLIP3Q96DZ5 RPAIN-203ENST00000381209 1535 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
CLIP3Q96DZ5 LMBR1L-204ENST00000547382 2235 ntTSL 1 (best) BASIC15.9■□□□□ 0.14
CLIP3Q96DZ5 LRRC47-201ENST00000378251 4310 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
CLIP3Q96DZ5 C12orf40-202ENST00000405531 1656 ntAPPRIS ALT2 TSL 1 (best) BASIC15.9■□□□□ 0.14
CLIP3Q96DZ5 GLDC-201ENST00000321612 3900 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
CLIP3Q96DZ5 SYBU-205ENST00000422135 3226 ntAPPRIS ALT2 TSL 5 BASIC15.9■□□□□ 0.14
CLIP3Q96DZ5 ZFP64-205ENST00000371518 1841 ntTSL 1 (best) BASIC15.9■□□□□ 0.14
CLIP3Q96DZ5 UPK2-201ENST00000264031 916 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
CLIP3Q96DZ5 STOML1-203ENST00000359750 984 ntTSL 1 (best) BASIC15.9■□□□□ 0.14
CLIP3Q96DZ5 RNF121-203ENST00000393713 2132 ntTSL 1 (best) BASIC15.9■□□□□ 0.14
CLIP3Q96DZ5 PMS2P4-201ENST00000412466 1052 ntBASIC15.9■□□□□ 0.14
CLIP3Q96DZ5 RNASE10-202ENST00000430083 1172 ntTSL 2 BASIC15.9■□□□□ 0.14
CLIP3Q96DZ5 AC020659.2-201ENST00000510176 585 ntTSL 4 BASIC15.9■□□□□ 0.14
CLIP3Q96DZ5 AC024230.1-201ENST00000511431 889 ntTSL 3 BASIC15.9■□□□□ 0.14
CLIP3Q96DZ5 IGLL5-201ENST00000526893 1050 ntAPPRIS P2 TSL 1 (best) BASIC15.9■□□□□ 0.14
CLIP3Q96DZ5 IGLL5-202ENST00000531372 882 ntTSL 1 (best) BASIC15.9■□□□□ 0.14
CLIP3Q96DZ5 AC243562.1-201ENST00000560672 389 ntBASIC15.9■□□□□ 0.14
CLIP3Q96DZ5 AC005306.1-201ENST00000587498 661 ntTSL 3 BASIC15.9■□□□□ 0.14
CLIP3Q96DZ5 IRF1-211ENST00000613424 821 ntTSL 1 (best) BASIC15.9■□□□□ 0.14
CLIP3Q96DZ5 AC247036.6-201ENST00000632950 410 ntAPPRIS P1 BASIC15.9■□□□□ 0.14
Retrieved 100 of 98,524 protein–RNA pairs in 70.6 ms