Protein–RNA interactions for Protein: O15379

HDAC3, Histone deacetylase 3, humanhuman

Predictions only

Length 428 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC3O15379 SYN1-202ENST00000340666 3172 ntAPPRIS ALT2 TSL 1 (best) BASIC16.02■□□□□ 0.16
HDAC3O15379 CTNND2-214ENST00000511377 4336 ntTSL 1 (best) BASIC16.02■□□□□ 0.16
HDAC3O15379 GHDC-203ENST00000428494 2518 ntTSL 5 BASIC16.02■□□□□ 0.16
HDAC3O15379 SCPEP1-201ENST00000262288 1942 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
HDAC3O15379 CASP2-201ENST00000310447 4225 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
HDAC3O15379 MEX3A-202ENST00000532414 6124 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
HDAC3O15379 SIT1-201ENST00000259608 1231 ntAPPRIS P2 TSL 1 (best) BASIC16.02■□□□□ 0.16
HDAC3O15379 EMD-201ENST00000369835 966 ntTSL 3 BASIC16.02■□□□□ 0.16
HDAC3O15379 ABHD16A-201ENST00000395952 2103 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
HDAC3O15379 AL645608.6-201ENST00000418300 402 ntTSL 3 BASIC16.02■□□□□ 0.16
HDAC3O15379 IFT27-205ENST00000433985 1095 ntAPPRIS ALT1 TSL 1 (best) BASIC16.02■□□□□ 0.16
HDAC3O15379 STARD13-205ENST00000439831 945 ntTSL 2 BASIC16.02■□□□□ 0.16
HDAC3O15379 LAMTOR4-205ENST00000468582 621 ntTSL 2 BASIC16.02■□□□□ 0.16
HDAC3O15379 UBA5-213ENST00000494238 2997 ntTSL 1 (best) BASIC16.02■□□□□ 0.16
HDAC3O15379 DUSP6-204ENST00000547291 1074 ntTSL 2 BASIC16.02■□□□□ 0.16
HDAC3O15379 AC135776.2-201ENST00000567803 714 ntTSL 4 BASIC16.02■□□□□ 0.16
HDAC3O15379 CTDNEP1-207ENST00000572043 857 ntTSL 3 BASIC16.02■□□□□ 0.16
HDAC3O15379 AC138894.3-201ENST00000603787 634 ntBASIC16.02■□□□□ 0.16
HDAC3O15379 ARL8B-208ENST00000611208 2981 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
HDAC3O15379 AC244517.11-201ENST00000624192 573 ntTSL 5 BASIC16.02■□□□□ 0.16
HDAC3O15379 PTPN11-207ENST00000639857 801 ntTSL 5 BASIC16.02■□□□□ 0.16
HDAC3O15379 AL805961.1-202ENST00000641562 540 ntBASIC16.02■□□□□ 0.16
HDAC3O15379 DNAJC10-210ENST00000616986 5783 ntTSL 1 (best) BASIC16.02■□□□□ 0.16
HDAC3O15379 TMEM51-202ENST00000376014 1843 ntAPPRIS P1 TSL 2 BASIC16.02■□□□□ 0.16
HDAC3O15379 SLC43A1-204ENST00000528450 2358 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.15
HDAC3O15379 ZNF687-201ENST00000324048 5378 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.15
HDAC3O15379 ATP2C1-224ENST00000533801 3690 ntTSL 1 (best) BASIC16.02■□□□□ 0.15
HDAC3O15379 FRMD5-202ENST00000417257 5011 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.15
HDAC3O15379 MSI2-201ENST00000284073 6364 ntAPPRIS P4 TSL 1 (best) BASIC16.02■□□□□ 0.15
HDAC3O15379 SLC9A3P2-201ENST00000447821 2021 ntBASIC16.02■□□□□ 0.15
HDAC3O15379 PDLIM1-201ENST00000329399 1452 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.15
HDAC3O15379 ADGRA1-203ENST00000607359 6004 ntAPPRIS ALT2 TSL 2 BASIC16.02■□□□□ 0.15
HDAC3O15379 AC007728.2-201ENST00000563315 2296 ntTSL 5 BASIC16.02■□□□□ 0.15
HDAC3O15379 CLIC6-202ENST00000360731 3860 ntAPPRIS ALT2 TSL 1 (best) BASIC16.02■□□□□ 0.15
HDAC3O15379 CAST-224ENST00000508830 2539 ntAPPRIS ALT2 TSL 5 BASIC16.02■□□□□ 0.15
HDAC3O15379 AC005622.1-201ENST00000636801 1703 ntBASIC16.02■□□□□ 0.15
HDAC3O15379 CACFD1-207ENST00000542192 2754 ntTSL 2 BASIC16.02■□□□□ 0.15
HDAC3O15379 MBD1-202ENST00000269471 2980 ntAPPRIS ALT2 TSL 5 BASIC16.02■□□□□ 0.15
HDAC3O15379 ROR2-202ENST00000375715 2993 ntTSL 1 (best) BASIC16.02■□□□□ 0.15
HDAC3O15379 SYBU-205ENST00000422135 3226 ntAPPRIS ALT2 TSL 5 BASIC16.02■□□□□ 0.15
HDAC3O15379 WDR53-201ENST00000332629 1679 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.15
HDAC3O15379 MMP2-201ENST00000219070 3741 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.15
HDAC3O15379 GRK5-202ENST00000392870 2654 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.15
HDAC3O15379 NETO2-202ENST00000562435 7481 ntAPPRIS P3 TSL 1 (best) BASIC16.01■□□□□ 0.15
HDAC3O15379 USP43-201ENST00000285199 4169 ntAPPRIS P3 TSL 1 (best) BASIC16.01■□□□□ 0.15
HDAC3O15379 TOR4A-201ENST00000357503 4148 ntAPPRIS P1 TSL 2 BASIC16.01■□□□□ 0.15
HDAC3O15379 LCK-206ENST00000373564 2137 ntTSL 5 BASIC16.01■□□□□ 0.15
HDAC3O15379 ACOT7-204ENST00000377855 1614 ntAPPRIS P4 TSL 1 (best) BASIC16.01■□□□□ 0.15
HDAC3O15379 CA9-201ENST00000378357 1618 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
HDAC3O15379 AC092919.2-201ENST00000623631 1645 ntBASIC16.01■□□□□ 0.15
HDAC3O15379 UCKL1-201ENST00000354216 1837 ntTSL 1 (best) BASIC16.01■□□□□ 0.15
HDAC3O15379 IGLL5-203ENST00000532223 1335 ntAPPRIS ALT2 TSL 1 (best) BASIC16.01■□□□□ 0.15
HDAC3O15379 NRXN1-204ENST00000401669 5870 ntAPPRIS ALT1 TSL 5 BASIC16.01■□□□□ 0.15
HDAC3O15379 ADAMTS13-201ENST00000355699 4442 ntAPPRIS ALT2 TSL 1 (best) BASIC16.01■□□□□ 0.15
HDAC3O15379 FAM151A-201ENST00000302250 2005 ntAPPRIS P2 TSL 1 (best) BASIC16.01■□□□□ 0.15
HDAC3O15379 PCBP1-201ENST00000303577 1750 ntAPPRIS P1 BASIC16.01■□□□□ 0.15
HDAC3O15379 KAT7-213ENST00000510819 1769 ntTSL 2 BASIC16.01■□□□□ 0.15
HDAC3O15379 PPM1J-202ENST00000464951 2474 ntTSL 1 (best) BASIC16.01■□□□□ 0.15
HDAC3O15379 AC023830.1-201ENST00000569678 1543 ntTSL 2 BASIC16.01■□□□□ 0.15
HDAC3O15379 MIF4GD-204ENST00000577542 1531 ntTSL 3 BASIC16.01■□□□□ 0.15
HDAC3O15379 TLE3-202ENST00000440567 2657 ntTSL 2 BASIC16.01■□□□□ 0.15
HDAC3O15379 ATP6AP2-215ENST00000636409 1962 ntAPPRIS ALT2 TSL 2 BASIC16.01■□□□□ 0.15
HDAC3O15379 MRPL28-201ENST00000199706 1098 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
HDAC3O15379 ID2-202ENST00000331129 623 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
HDAC3O15379 OPN1LW-201ENST00000369951 1261 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
HDAC3O15379 DMKN-206ENST00000418261 1257 ntAPPRIS ALT2 TSL 1 (best) BASIC16.01■□□□□ 0.15
HDAC3O15379 AKR7L-201ENST00000420396 1240 ntAPPRIS ALT2 TSL 5 BASIC16.01■□□□□ 0.15
HDAC3O15379 RAB42-202ENST00000465518 857 ntAPPRIS P1 TSL 2 BASIC16.01■□□□□ 0.15
HDAC3O15379 LMX1B-203ENST00000526117 1195 ntTSL 1 (best) BASIC16.01■□□□□ 0.15
HDAC3O15379 GSTO1-207ENST00000539281 1052 ntTSL 5 BASIC16.01■□□□□ 0.15
HDAC3O15379 C12orf76-204ENST00000547573 607 ntTSL 3 BASIC16.01■□□□□ 0.15
HDAC3O15379 AC217774.2-201ENST00000580347 560 ntTSL 4 BASIC16.01■□□□□ 0.15
HDAC3O15379 LDHAL6A-203ENST00000615355 1042 ntTSL 5 BASIC16.01■□□□□ 0.15
HDAC3O15379 PTPN5-201ENST00000358540 3135 ntTSL 1 (best) BASIC16.01■□□□□ 0.15
HDAC3O15379 B3GLCT-201ENST00000343307 4254 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
HDAC3O15379 NELFA-203ENST00000411638 2199 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
HDAC3O15379 CCDC144B-202ENST00000445752 2197 ntTSL 2 BASIC16.01■□□□□ 0.15
HDAC3O15379 STXBP5-207ENST00000546097 2160 ntTSL 1 (best) BASIC16.01■□□□□ 0.15
HDAC3O15379 IL3RA-202ENST00000381469 1476 ntTSL 5 BASIC16.01■□□□□ 0.15
HDAC3O15379 ACOX3-202ENST00000413009 2374 ntTSL 1 (best) BASIC16.01■□□□□ 0.15
HDAC3O15379 COL26A1-201ENST00000313669 3033 ntAPPRIS P2 TSL 1 (best) BASIC16.01■□□□□ 0.15
HDAC3O15379 CD68-201ENST00000250092 1878 ntAPPRIS P3 TSL 1 (best) BASIC16.01■□□□□ 0.15
HDAC3O15379 TRPV4-204ENST00000536838 2514 ntTSL 1 (best) BASIC16.01■□□□□ 0.15
HDAC3O15379 PTGER3-202ENST00000351052 1404 ntAPPRIS ALT2 TSL 5 BASIC16.01■□□□□ 0.15
HDAC3O15379 STAP2-201ENST00000594605 1426 ntAPPRIS ALT2 TSL 1 (best) BASIC16.01■□□□□ 0.15
HDAC3O15379 SLC38A11-202ENST00000409058 1647 ntAPPRIS ALT2 TSL 5 BASIC16.01■□□□□ 0.15
HDAC3O15379 RGP1-201ENST00000378078 7018 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
HDAC3O15379 PXN-201ENST00000228307 3785 ntAPPRIS P4 TSL 1 (best) BASIC16.01■□□□□ 0.15
HDAC3O15379 CDK16-202ENST00000357227 3144 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
HDAC3O15379 CRAMP1-202ENST00000397412 7772 ntAPPRIS P1 TSL 5 BASIC16.01■□□□□ 0.15
HDAC3O15379 RUNDC3B-202ENST00000338056 4099 ntTSL 2 BASIC16■□□□□ 0.15
HDAC3O15379 MAGEA12-202ENST00000393869 1761 ntAPPRIS P1 TSL 2 BASIC16■□□□□ 0.15
HDAC3O15379 PLEKHN1-201ENST00000379407 2194 ntAPPRIS ALT2 TSL 1 (best) BASIC16■□□□□ 0.15
HDAC3O15379 C4A-243ENST00000428956 5460 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
HDAC3O15379 C4B-202ENST00000435363 5460 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
HDAC3O15379 ZNF662-201ENST00000328199 3186 ntAPPRIS P1 TSL 5 BASIC16■□□□□ 0.15
HDAC3O15379 RSRP1-201ENST00000243189 1502 ntAPPRIS P2 TSL 1 (best) BASIC16■□□□□ 0.15
HDAC3O15379 GMPPA-204ENST00000373908 1501 ntAPPRIS P1 TSL 5 BASIC16■□□□□ 0.15
HDAC3O15379 GALNT9-202ENST00000397325 1727 ntTSL 1 (best) BASIC16■□□□□ 0.15
HDAC3O15379 FBXL12-208ENST00000589626 1920 ntTSL 2 BASIC16■□□□□ 0.15
Retrieved 100 of 98,524 protein–RNA pairs in 38.8 ms