Protein–RNA interactions for Protein: Q8NEL0

CCDC54, Coiled-coil domain-containing protein 54, humanhuman

Predictions only

Length 328 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC54Q8NEL0 AL671710.1-201ENST00000610245 2349 ntBASIC14.41□□□□□ -0.1
CCDC54Q8NEL0 PGR-209ENST00000617858 2816 ntTSL 5 BASIC14.41□□□□□ -0.1
CCDC54Q8NEL0 NPL-204ENST00000367554 3027 ntTSL 1 (best) BASIC14.41□□□□□ -0.1
CCDC54Q8NEL0 GJC3-201ENST00000312891 1116 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
CCDC54Q8NEL0 PTPMT1-201ENST00000326656 928 ntTSL 1 (best) BASIC14.41□□□□□ -0.1
CCDC54Q8NEL0 DBNDD2-202ENST00000360981 1078 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
CCDC54Q8NEL0 DECR2-202ENST00000424398 1012 ntTSL 5 BASIC14.41□□□□□ -0.1
CCDC54Q8NEL0 PMS2P1-201ENST00000431037 1228 ntBASIC14.41□□□□□ -0.1
CCDC54Q8NEL0 AL162431.1-201ENST00000434447 543 ntTSL 3 BASIC14.41□□□□□ -0.1
CCDC54Q8NEL0 PGAP2-206ENST00000459679 795 ntTSL 2 BASIC14.41□□□□□ -0.1
CCDC54Q8NEL0 CD99L2-206ENST00000466436 988 ntAPPRIS P4 TSL 1 (best) BASIC14.41□□□□□ -0.1
CCDC54Q8NEL0 MPIG6B-210ENST00000480039 790 ntAPPRIS ALT2 TSL 1 (best) BASIC14.41□□□□□ -0.1
CCDC54Q8NEL0 AC073648.2-201ENST00000510116 352 ntBASIC14.41□□□□□ -0.1
CCDC54Q8NEL0 TMEM258-204ENST00000537328 575 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
CCDC54Q8NEL0 AC010654.1-201ENST00000615722 808 ntBASIC14.41□□□□□ -0.1
CCDC54Q8NEL0 MIR1199-201ENST00000621445 119 ntBASIC14.41□□□□□ -0.1
CCDC54Q8NEL0 AC244517.11-201ENST00000624192 573 ntTSL 5 BASIC14.41□□□□□ -0.1
CCDC54Q8NEL0 CHD4-201ENST00000357008 6496 ntAPPRIS P3 TSL 1 (best) BASIC14.41□□□□□ -0.1
CCDC54Q8NEL0 DHFR-201ENST00000439211 3917 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
CCDC54Q8NEL0 TEX13A-201ENST00000600991 1377 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
CCDC54Q8NEL0 LETM2-201ENST00000297720 1693 ntTSL 2 BASIC14.41□□□□□ -0.1
CCDC54Q8NEL0 F3-202ENST00000370207 1879 ntTSL 1 (best) BASIC14.41□□□□□ -0.1
CCDC54Q8NEL0 SLFNL1-203ENST00000372611 1865 ntAPPRIS ALT2 TSL 2 BASIC14.41□□□□□ -0.1
CCDC54Q8NEL0 BTN3A1-204ENST00000425234 1882 ntTSL 2 BASIC14.41□□□□□ -0.1
CCDC54Q8NEL0 ONECUT1-201ENST00000305901 2092 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
CCDC54Q8NEL0 RUNDC3B-203ENST00000394654 2064 ntAPPRIS P4 TSL 2 BASIC14.41□□□□□ -0.1
CCDC54Q8NEL0 ABLIM2-202ENST00000361581 2472 ntAPPRIS ALT2 TSL 1 (best) BASIC14.41□□□□□ -0.1
CCDC54Q8NEL0 CELF6-201ENST00000287202 3345 ntAPPRIS P3 TSL 1 (best) BASIC14.41□□□□□ -0.1
CCDC54Q8NEL0 SKOR1-201ENST00000341418 3332 ntAPPRIS P2 TSL 1 (best) BASIC14.41□□□□□ -0.1
CCDC54Q8NEL0 RBPMS-204ENST00000397323 2941 ntAPPRIS P3 TSL 1 (best) BASIC14.41□□□□□ -0.1
CCDC54Q8NEL0 ARHGEF28-211ENST00000512883 2936 ntTSL 2 BASIC14.41□□□□□ -0.1
CCDC54Q8NEL0 FHL1-207ENST00000394155 2706 ntTSL 5 BASIC14.41□□□□□ -0.1
CCDC54Q8NEL0 AC105760.2-201ENST00000418430 2341 ntTSL 2 BASIC14.41□□□□□ -0.1
CCDC54Q8NEL0 SLC17A7-204ENST00000600601 2237 ntTSL 2 BASIC14.41□□□□□ -0.1
CCDC54Q8NEL0 RSRP1-201ENST00000243189 1502 ntAPPRIS P2 TSL 1 (best) BASIC14.41□□□□□ -0.1
CCDC54Q8NEL0 CNPY4-201ENST00000262932 1502 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
CCDC54Q8NEL0 DMKN-209ENST00000429837 1447 ntAPPRIS ALT2 TSL 1 (best) BASIC14.41□□□□□ -0.1
CCDC54Q8NEL0 STARD3NL-204ENST00000434197 1341 ntTSL 5 BASIC14.41□□□□□ -0.1
CCDC54Q8NEL0 FLT3LG-204ENST00000595510 1301 ntTSL 5 BASIC14.41□□□□□ -0.1
CCDC54Q8NEL0 RASAL3-201ENST00000343625 3293 ntAPPRIS P2 TSL 2 BASIC14.4□□□□□ -0.1
CCDC54Q8NEL0 TVP23B-202ENST00000476139 2989 ntTSL 1 (best) BASIC14.4□□□□□ -0.1
CCDC54Q8NEL0 SEMA4B-202ENST00000411539 3807 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
CCDC54Q8NEL0 AIFM1-201ENST00000287295 2260 ntAPPRIS P4 TSL 1 (best) BASIC14.4□□□□□ -0.1
CCDC54Q8NEL0 ELK1-203ENST00000376983 2258 ntAPPRIS P3 TSL 1 (best) BASIC14.4□□□□□ -0.1
CCDC54Q8NEL0 EPHX2-201ENST00000380476 2064 ntTSL 2 BASIC14.4□□□□□ -0.1
CCDC54Q8NEL0 COPS7B-206ENST00000410017 2051 ntTSL 3 BASIC14.4□□□□□ -0.1
CCDC54Q8NEL0 FRS2-206ENST00000549921 1952 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
CCDC54Q8NEL0 DGKZ-201ENST00000318201 3213 ntTSL 2 BASIC14.4□□□□□ -0.1
CCDC54Q8NEL0 CELF4-202ENST00000361795 1853 ntAPPRIS ALT1 TSL 2 BASIC14.4□□□□□ -0.1
CCDC54Q8NEL0 SP100-204ENST00000409341 1898 ntTSL 1 (best) BASIC14.4□□□□□ -0.1
CCDC54Q8NEL0 HARS-204ENST00000438307 1789 ntTSL 2 BASIC14.4□□□□□ -0.1
CCDC54Q8NEL0 AC004835.1-201ENST00000428222 2907 ntTSL 5 BASIC14.4□□□□□ -0.1
CCDC54Q8NEL0 AFAP1L2-202ENST00000369271 3964 ntAPPRIS ALT2 TSL 1 (best) BASIC14.4□□□□□ -0.1
CCDC54Q8NEL0 SLC22A20-204ENST00000530038 1673 ntBASIC14.4□□□□□ -0.1
CCDC54Q8NEL0 LSP1-204ENST00000406638 2640 ntAPPRIS ALT2 TSL 2 BASIC14.4□□□□□ -0.1
CCDC54Q8NEL0 ADGRA1-AS1-202ENST00000444433 2646 ntTSL 3 BASIC14.4□□□□□ -0.1
CCDC54Q8NEL0 PKD1L2-209ENST00000531391 1488 ntTSL 1 (best) BASIC14.4□□□□□ -0.1
CCDC54Q8NEL0 ALDOA-226ENST00000569798 1499 ntTSL 2 BASIC14.4□□□□□ -0.1
CCDC54Q8NEL0 SYNDIG1L-202ENST00000554823 2420 ntAPPRIS P1 TSL 3 BASIC14.4□□□□□ -0.1
CCDC54Q8NEL0 CAMK2D-205ENST00000394524 5294 ntAPPRIS ALT1 TSL 2 BASIC14.4□□□□□ -0.1
CCDC54Q8NEL0 HOXD3-201ENST00000249440 2303 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
CCDC54Q8NEL0 ABR-203ENST00000536794 2213 ntTSL 2 BASIC14.4□□□□□ -0.1
CCDC54Q8NEL0 TMEM14A-201ENST00000211314 992 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
CCDC54Q8NEL0 ATP6V0CP3-201ENST00000417255 467 ntBASIC14.4□□□□□ -0.1
CCDC54Q8NEL0 LAT-205ENST00000454369 1262 ntAPPRIS ALT2 TSL 5 BASIC14.4□□□□□ -0.1
CCDC54Q8NEL0 NT5C2-211ENST00000470299 249 ntTSL 5 BASIC14.4□□□□□ -0.1
CCDC54Q8NEL0 NMU-205ENST00000511469 756 ntTSL 3 BASIC14.4□□□□□ -0.1
CCDC54Q8NEL0 OR7E14P-202ENST00000530490 1290 ntBASIC14.4□□□□□ -0.1
CCDC54Q8NEL0 MTUS2-205ENST00000542829 1165 ntTSL 1 (best) BASIC14.4□□□□□ -0.1
CCDC54Q8NEL0 AL589182.1-202ENST00000548416 533 ntTSL 4 BASIC14.4□□□□□ -0.1
CCDC54Q8NEL0 COQ7-208ENST00000568985 714 ntAPPRIS P3 TSL 2 BASIC14.4□□□□□ -0.1
CCDC54Q8NEL0 SLC9A3-AS1-204ENST00000606288 791 ntTSL 2 BASIC14.4□□□□□ -0.1
CCDC54Q8NEL0 WT1-AS_2.1-201ENST00000613208 137 ntBASIC14.4□□□□□ -0.1
CCDC54Q8NEL0 ACY1-212ENST00000635797 1294 ntTSL 5 BASIC14.4□□□□□ -0.1
CCDC54Q8NEL0 PABPC4-203ENST00000372858 2753 ntTSL 1 (best) BASIC14.4□□□□□ -0.1
CCDC54Q8NEL0 CANX-201ENST00000247461 4260 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
CCDC54Q8NEL0 VARS2-212ENST00000542001 4064 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
CCDC54Q8NEL0 CNP-201ENST00000393888 2583 ntTSL 1 (best) BASIC14.4□□□□□ -0.1
CCDC54Q8NEL0 DYRK1B-205ENST00000597639 1806 ntTSL 5 BASIC14.4□□□□□ -0.1
CCDC54Q8NEL0 GLOD4-203ENST00000536578 2497 ntTSL 5 BASIC14.4□□□□□ -0.1
CCDC54Q8NEL0 CCDC155-201ENST00000447857 2378 ntAPPRIS P2 TSL 1 (best) BASIC14.4□□□□□ -0.1
CCDC54Q8NEL0 EYA2-208ENST00000497062 2384 ntTSL 1 (best) BASIC14.4□□□□□ -0.1
CCDC54Q8NEL0 UNKL-201ENST00000248104 4320 ntTSL 1 (best) BASIC14.4□□□□□ -0.1
CCDC54Q8NEL0 SEPT8-204ENST00000378699 2289 ntTSL 5 BASIC14.4□□□□□ -0.1
CCDC54Q8NEL0 NF1-211ENST00000487476 2265 ntTSL 1 (best) BASIC14.4□□□□□ -0.1
CCDC54Q8NEL0 AC006449.6-201ENST00000612330 2296 ntBASIC14.4□□□□□ -0.1
CCDC54Q8NEL0 LCK-201ENST00000333070 2166 ntTSL 1 (best) BASIC14.4□□□□□ -0.1
CCDC54Q8NEL0 MPP1-205ENST00000413259 2195 ntTSL 2 BASIC14.4□□□□□ -0.1
CCDC54Q8NEL0 ERO1B-202ENST00000354619 4567 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
CCDC54Q8NEL0 LINC00963-208ENST00000454968 1403 ntTSL 1 (best) BASIC14.4□□□□□ -0.1
CCDC54Q8NEL0 CABP1-204ENST00000453000 1857 ntTSL 1 (best) BASIC14.4□□□□□ -0.1
CCDC54Q8NEL0 GRM1-201ENST00000282753 6622 ntAPPRIS P3 TSL 1 (best) BASIC14.4□□□□□ -0.1
CCDC54Q8NEL0 FMO5-208ENST00000578284 1784 ntTSL 5 BASIC14.39□□□□□ -0.11
CCDC54Q8NEL0 MICALL2-201ENST00000297508 3121 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
CCDC54Q8NEL0 CTCF-201ENST00000264010 3939 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
CCDC54Q8NEL0 MAPK8IP2-202ENST00000329492 3381 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
CCDC54Q8NEL0 PCDHA1-201ENST00000378133 2726 ntBASIC14.39□□□□□ -0.11
CCDC54Q8NEL0 TUBGCP2-203ENST00000368563 4218 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
CCDC54Q8NEL0 ZNF672-201ENST00000306562 2989 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
CCDC54Q8NEL0 C4A-259ENST00000498271 5269 ntTSL 1 (best) BASIC14.39□□□□□ -0.11
Retrieved 100 of 98,524 protein–RNA pairs in 29.6 ms