Protein–RNA interactions for Protein: P48431

SOX2, Transcription factor SOX-2, humanhuman

Predictions only

Length 317 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX2P48431 TTC29-202ENST00000398886 1729 ntAPPRIS ALT2 TSL 5 BASIC14.55□□□□□ -0.08
SOX2P48431 ZNF580-202ENST00000543039 1707 ntAPPRIS P1 BASIC14.55□□□□□ -0.08
SOX2P48431 ADAM22-204ENST00000398204 9334 ntAPPRIS ALT2 TSL 1 (best) BASIC14.55□□□□□ -0.08
SOX2P48431 DDB1-201ENST00000301764 4506 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
SOX2P48431 KCP-208ENST00000620378 4515 ntAPPRIS ALT2 TSL 5 BASIC14.55□□□□□ -0.08
SOX2P48431 AC012313.3-202ENST00000599109 3322 ntTSL 5 BASIC14.55□□□□□ -0.08
SOX2P48431 UHMK1-202ENST00000489294 8478 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
SOX2P48431 HLA-DQB2-231ENST00000435145 2026 ntBASIC14.55□□□□□ -0.08
SOX2P48431 RAB9A-202ENST00000464506 2039 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
SOX2P48431 WNT2-201ENST00000265441 2907 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
SOX2P48431 TLE3-215ENST00000559048 2918 ntTSL 2 BASIC14.55□□□□□ -0.08
SOX2P48431 GPR32-201ENST00000270590 1269 ntAPPRIS P1 BASIC14.55□□□□□ -0.08
SOX2P48431 STRA8-201ENST00000275764 993 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
SOX2P48431 KRTAP5-6-201ENST00000382160 561 ntAPPRIS P1 BASIC14.55□□□□□ -0.08
SOX2P48431 SPEG-204ENST00000396689 1274 ntTSL 1 (best) BASIC14.55□□□□□ -0.08
SOX2P48431 LINC01972-201ENST00000422271 553 ntTSL 3 BASIC14.55□□□□□ -0.08
SOX2P48431 AC099329.3-201ENST00000431549 602 ntAPPRIS P1 TSL 4 BASIC14.55□□□□□ -0.08
SOX2P48431 RABL2B-209ENST00000435118 1126 ntAPPRIS P3 TSL 1 (best) BASIC14.55□□□□□ -0.08
SOX2P48431 AF186192.2-201ENST00000524514 423 ntTSL 3 BASIC14.55□□□□□ -0.08
SOX2P48431 MPDU1-223ENST00000582151 728 ntBASIC14.55□□□□□ -0.08
SOX2P48431 ANKRD29-202ENST00000585908 846 ntTSL 2 BASIC14.55□□□□□ -0.08
SOX2P48431 AL591684.3-201ENST00000605187 298 ntBASIC14.55□□□□□ -0.08
SOX2P48431 CCNC-219ENST00000627680 896 ntTSL 5 BASIC14.55□□□□□ -0.08
SOX2P48431 CRLS1-203ENST00000452938 3859 ntTSL 1 (best) BASIC14.55□□□□□ -0.08
SOX2P48431 MRI1-202ENST00000319545 3027 ntTSL 1 (best) BASIC14.55□□□□□ -0.08
SOX2P48431 SARDH-202ENST00000371867 1326 ntTSL 1 (best) BASIC14.55□□□□□ -0.08
SOX2P48431 IER3-202ENST00000376377 1350 ntBASIC14.55□□□□□ -0.08
SOX2P48431 KRT8P39-201ENST00000396270 1433 ntBASIC14.55□□□□□ -0.08
SOX2P48431 AP001189.5-201ENST00000637683 1413 ntTSL 5 BASIC14.55□□□□□ -0.08
SOX2P48431 SLC1A7-204ENST00000611397 2499 ntTSL 1 (best) BASIC14.55□□□□□ -0.08
SOX2P48431 PIK3CD-206ENST00000536656 5483 ntTSL 5 BASIC14.55□□□□□ -0.08
SOX2P48431 PIK3CD-208ENST00000628140 5483 ntTSL 5 BASIC14.55□□□□□ -0.08
SOX2P48431 LYAR-201ENST00000343470 1569 ntAPPRIS P2 TSL 1 (best) BASIC14.55□□□□□ -0.08
SOX2P48431 TRH-202ENST00000507066 1580 ntAPPRIS ALT1 TSL 5 BASIC14.55□□□□□ -0.08
SOX2P48431 PARD3B-204ENST00000406610 8174 ntAPPRIS ALT2 TSL 1 (best) BASIC14.55□□□□□ -0.08
SOX2P48431 MYEF2-201ENST00000267836 2958 ntAPPRIS ALT2 TSL 1 (best) BASIC14.55□□□□□ -0.08
SOX2P48431 LONRF3-201ENST00000304778 2989 ntTSL 1 (best) BASIC14.55□□□□□ -0.08
SOX2P48431 SLC12A5-209ENST00000616201 2955 ntTSL 5 BASIC14.55□□□□□ -0.08
SOX2P48431 SYNCRIP-202ENST00000369622 3023 ntAPPRIS P3 TSL 1 (best) BASIC14.55□□□□□ -0.08
SOX2P48431 NAF1-201ENST00000274054 1907 ntAPPRIS P3 TSL 1 (best) BASIC14.54□□□□□ -0.08
SOX2P48431 MGME1-202ENST00000377709 1936 ntTSL 2 BASIC14.54□□□□□ -0.08
SOX2P48431 FOXI2-201ENST00000388920 3217 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
SOX2P48431 BECN1-213ENST00000590099 2087 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
SOX2P48431 DGKZ-205ENST00000456247 3482 ntAPPRIS ALT2 TSL 1 (best) BASIC14.54□□□□□ -0.08
SOX2P48431 ARID5A-201ENST00000357485 2188 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
SOX2P48431 CAMKK2-211ENST00000538733 5175 ntAPPRIS ALT2 TSL 1 (best) BASIC14.54□□□□□ -0.08
SOX2P48431 CHMP1A-202ENST00000535997 2295 ntTSL 2 BASIC14.54□□□□□ -0.08
SOX2P48431 GFOD1-206ENST00000612338 2481 ntTSL 2 BASIC14.54□□□□□ -0.08
SOX2P48431 MARCKS-201ENST00000612661 4275 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
SOX2P48431 AC023824.1-201ENST00000562945 2975 ntBASIC14.54□□□□□ -0.08
SOX2P48431 NPHP4-211ENST00000622020 3004 ntTSL 5 BASIC14.54□□□□□ -0.08
SOX2P48431 SLC26A1-202ENST00000398516 3109 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
SOX2P48431 ITM2C-204ENST00000409704 1106 ntTSL 5 BASIC14.54□□□□□ -0.08
SOX2P48431 DYNC1LI2-202ENST00000440564 1145 ntTSL 2 BASIC14.54□□□□□ -0.08
SOX2P48431 IFT20-215ENST00000585313 852 ntAPPRIS P4 TSL 3 BASIC14.54□□□□□ -0.08
SOX2P48431 AP001269.4-201ENST00000609611 512 ntBASIC14.54□□□□□ -0.08
SOX2P48431 AC243773.1-201ENST00000614759 544 ntTSL 5 BASIC14.54□□□□□ -0.08
SOX2P48431 PSMC3IP-202ENST00000393795 1416 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
SOX2P48431 C1orf43-201ENST00000350592 1610 ntTSL 1 (best) BASIC14.54□□□□□ -0.08
SOX2P48431 PACS1-209ENST00000529757 1688 ntAPPRIS ALT2 TSL 1 (best) BASIC14.54□□□□□ -0.08
SOX2P48431 PCGF1-201ENST00000233630 1792 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
SOX2P48431 LILRB5-202ENST00000345866 1864 ntTSL 2 BASIC14.54□□□□□ -0.08
SOX2P48431 PCGF3-213ENST00000620529 1899 ntBASIC14.54□□□□□ -0.08
SOX2P48431 SHISA5-209ENST00000443308 1933 ntTSL 2 BASIC14.54□□□□□ -0.08
SOX2P48431 Z99756.1-201ENST00000458463 1951 ntTSL 1 (best) BASIC14.54□□□□□ -0.08
SOX2P48431 ADAM15-208ENST00000447332 2146 ntAPPRIS ALT2 TSL 2 BASIC14.54□□□□□ -0.08
SOX2P48431 GOLGA7B-201ENST00000370602 6447 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
SOX2P48431 CD5L-201ENST00000368174 2191 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
SOX2P48431 NR4A3-202ENST00000338488 2588 ntTSL 1 (best) BASIC14.54□□□□□ -0.08
SOX2P48431 PLEKHG3-202ENST00000394691 4397 ntTSL 5 BASIC14.54□□□□□ -0.08
SOX2P48431 GSPT1-202ENST00000434724 7105 ntAPPRIS P4 TSL 1 (best) BASIC14.54□□□□□ -0.08
SOX2P48431 ZNF451-201ENST00000357489 4998 ntAPPRIS P3 TSL 1 (best) BASIC14.53□□□□□ -0.08
SOX2P48431 TRIM13-204ENST00000420995 2607 ntAPPRIS P3 TSL 1 (best) BASIC14.53□□□□□ -0.08
SOX2P48431 RAP1GDS1-203ENST00000380158 2085 ntTSL 1 (best) BASIC14.53□□□□□ -0.08
SOX2P48431 ATG13-216ENST00000530500 2030 ntTSL 2 BASIC14.53□□□□□ -0.08
SOX2P48431 HS6ST2-201ENST00000370833 1938 ntTSL 5 BASIC14.53□□□□□ -0.08
SOX2P48431 GFAP-203ENST00000435360 1779 ntTSL 2 BASIC14.53□□□□□ -0.08
SOX2P48431 DNAJB8-AS1-201ENST00000471626 1798 ntTSL 2 BASIC14.53□□□□□ -0.08
SOX2P48431 BCL2L11-219ENST00000619294 5132 ntTSL 5 BASIC14.53□□□□□ -0.08
SOX2P48431 TBL2-205ENST00000432538 1573 ntTSL 2 BASIC14.53□□□□□ -0.08
SOX2P48431 AP005117.1-201ENST00000584346 1413 ntBASIC14.53□□□□□ -0.08
SOX2P48431 RIPK1-201ENST00000259808 4160 ntAPPRIS P1 TSL 5 BASIC14.53□□□□□ -0.08
SOX2P48431 GRAMD1C-201ENST00000358160 4177 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
SOX2P48431 CGREF1-206ENST00000405600 1346 ntAPPRIS P2 TSL 4 BASIC14.53□□□□□ -0.08
SOX2P48431 BOLA2B-201ENST00000305321 1012 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
SOX2P48431 MCL1-201ENST00000307940 1110 ntTSL 1 (best) BASIC14.53□□□□□ -0.08
SOX2P48431 BOLA2-201ENST00000330978 1012 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
SOX2P48431 PDLIM7-205ENST00000393551 1226 ntTSL 1 (best) BASIC14.53□□□□□ -0.08
SOX2P48431 AL109741.1-201ENST00000432195 403 ntTSL 2 BASIC14.53□□□□□ -0.08
SOX2P48431 ITGB1BP1-205ENST00000456913 1043 ntTSL 2 BASIC14.53□□□□□ -0.08
SOX2P48431 AC010655.4-201ENST00000462662 707 ntTSL 4 BASIC14.53□□□□□ -0.08
SOX2P48431 ITGB1BP1-216ENST00000488451 874 ntTSL 3 BASIC14.53□□□□□ -0.08
SOX2P48431 KLK12-203ENST00000525263 1077 ntAPPRIS ALT2 TSL 1 (best) BASIC14.53□□□□□ -0.08
SOX2P48431 ZBED5-AS1-202ENST00000529014 771 ntTSL 5 BASIC14.53□□□□□ -0.08
SOX2P48431 MTHFSD-203ENST00000543303 1207 ntAPPRIS ALT2 TSL 1 (best) BASIC14.53□□□□□ -0.08
SOX2P48431 AL049597.2-201ENST00000565575 961 ntBASIC14.53□□□□□ -0.08
SOX2P48431 AC012615.1-201ENST00000565797 1299 ntBASIC14.53□□□□□ -0.08
SOX2P48431 HOXB8-203ENST00000576562 743 ntAPPRIS ALT1 TSL 2 BASIC14.53□□□□□ -0.08
SOX2P48431 MIR3180-1-201ENST00000580374 94 ntBASIC14.53□□□□□ -0.08
SOX2P48431 MIR3180-3-201ENST00000584616 94 ntBASIC14.53□□□□□ -0.08
Retrieved 100 of 98,524 protein–RNA pairs in 30.8 ms