RNA–Protein interactions for RNA: ENST00000409704.6

ITM2C-204, Transcript of integral membrane protein 2C, humanhuman

TSL 5 BASIC

Gene ITM2C, Length 1,106 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ITM2C-204ENST00000409704 NISCHQ9Y2I1 1504 aa44.44■■■■■ 4.7
ITM2C-204ENST00000409704 CCDC180Q9P1Z9 1646 aa39.79■■■■□ 3.96
ITM2C-204ENST00000409704 ABCC9O60706 1549 aa39.11■■■■□ 3.85
ITM2C-204ENST00000409704 RB1CC1Q8TDY2 1594 aa37.54■■■■□ 3.6
ITM2C-204ENST00000409704 NACADO15069 1562 aa37.39■■■■□ 3.58
ITM2C-204ENST00000409704 MYO15BQ96JP2 1530 aa37.07■■■■□ 3.53
ITM2C-204ENST00000409704 DCAF8L2P0C7V8 631 aa37.02■■■■□ 3.52
ITM2C-204ENST00000409704 ZCCHC6Q5VYS8 1495 aaKnown RBP37■■■■□ 3.51
ITM2C-204ENST00000409704 UNC13AQ9UPW8 1703 aa36.79■■■■□ 3.48
ITM2C-204ENST00000409704 DCAF1Q9Y4B6 1507 aa36.79■■■■□ 3.48
ITM2C-204ENST00000409704 BICRAQ9NZM4 1560 aa36.44■■■■□ 3.42
ITM2C-204ENST00000409704 PABPN1Q86U42 306 aaKnown RBP eCLIP36.37■■■■□ 3.41
ITM2C-204ENST00000409704 SCRIBQ14160 1630 aa36.22■■■■□ 3.39
ITM2C-204ENST00000409704 DNAJC5BQ9UF47 199 aa36.1■■■■□ 3.37
ITM2C-204ENST00000409704 SHROOM4Q9ULL8 1493 aa36.05■■■■□ 3.36
ITM2C-204ENST00000409704 EIF4G1Q04637 1599 aaKnown RBP35.5■■■■□ 3.27
ITM2C-204ENST00000409704 CC2D2AQ9P2K1 1620 aa35.43■■■■□ 3.26
ITM2C-204ENST00000409704 CECR2Q9BXF3 1484 aa35.19■■■■□ 3.22
ITM2C-204ENST00000409704 SMARCA4P51532 1647 aa34.62■■■■□ 3.13
ITM2C-204ENST00000409704 BAZ1AQ9NRL2 1556 aaPredicted RBP34.49■■■■□ 3.11
ITM2C-204ENST00000409704 NCAPD3P42695 1498 aa34.45■■■■□ 3.1
ITM2C-204ENST00000409704 ATAD2BQ9ULI0 1458 aa34.43■■■■□ 3.1
ITM2C-204ENST00000409704 SMARCA2P51531 1590 aa34.42■■■■□ 3.1
ITM2C-204ENST00000409704 HMGXB3Q12766 1538 aa34.35■■■■□ 3.09
ITM2C-204ENST00000409704 PEG3Q9GZU2 1588 aa34.28■■■■□ 3.08
ITM2C-204ENST00000409704 MROH2BQ7Z745 1585 aa34.24■■■■□ 3.07
ITM2C-204ENST00000409704 BAZ1BQ9UIG0 1483 aaKnown RBP34.15■■■■□ 3.06
ITM2C-204ENST00000409704 WIZO95785 1651 aa33.9■■■■□ 3.02
ITM2C-204ENST00000409704 NESP48681 1621 aa33.76■■■■□ 3
ITM2C-204ENST00000409704 ERCC6Q03468 1493 aa33.75■■■□□ 2.99
ITM2C-204ENST00000409704 LAMC3Q9Y6N6 1575 aa33.68■■■□□ 2.98
ITM2C-204ENST00000409704 RSF1Q96T23 1441 aaPredicted RBP33.67■■■□□ 2.98
ITM2C-204ENST00000409704 CUX2O14529 1486 aa33.56■■■□□ 2.96
ITM2C-204ENST00000409704 TOP2AP11388 1531 aaKnown RBP33.53■■■□□ 2.96
ITM2C-204ENST00000409704 KIF21AQ7Z4S6 1674 aa33.46■■■□□ 2.95
ITM2C-204ENST00000409704 THOC2Q8NI27 1593 aaKnown RBP33.45■■■□□ 2.95
ITM2C-204ENST00000409704 CADPSQ9ULU8 1353 aa33.39■■■□□ 2.94
ITM2C-204ENST00000409704 PDS5BQ9NTI5 1447 aa33.36■■■□□ 2.93
ITM2C-204ENST00000409704 CFTRP13569 1480 aa33.18■■■□□ 2.9
ITM2C-204ENST00000409704 MRC2Q9UBG0 1479 aa33.12■■■□□ 2.89
ITM2C-204ENST00000409704 CEP164Q9UPV0 1460 aa33.09■■■□□ 2.89
ITM2C-204ENST00000409704 PRDM2Q13029 1718 aa33.08■■■□□ 2.89
ITM2C-204ENST00000409704 FANCD2Q9BXW9 1451 aa33.07■■■□□ 2.88
ITM2C-204ENST00000409704 WDR62O43379 1518 aa33.07■■■□□ 2.88
ITM2C-204ENST00000409704 CCDC88BA6NC98 1476 aa33.04■■■□□ 2.88
ITM2C-204ENST00000409704 URB2Q14146 1524 aaKnown RBP32.79■■■□□ 2.84
ITM2C-204ENST00000409704 DNAJC5Q9H3Z4 198 aa32.78■■■□□ 2.84
ITM2C-204ENST00000409704 TOPBP1Q92547 1522 aa32.52■■■□□ 2.8
ITM2C-204ENST00000409704 DNMBPQ6XZF7 1577 aa32.49■■■□□ 2.79
ITM2C-204ENST00000409704 ABCC8Q09428 1581 aa32.45■■■□□ 2.79
ITM2C-204ENST00000409704 SUPT5HO00267 1087 aaKnown RBP32.41■■■□□ 2.78
ITM2C-204ENST00000409704 IFT140Q96RY7 1462 aa32.39■■■□□ 2.78
ITM2C-204ENST00000409704 ZNF608Q9ULD9 1512 aaPredicted RBP32.27■■■□□ 2.76
ITM2C-204ENST00000409704 TARBP1Q13395 1621 aaKnown RBP32.24■■■□□ 2.75
ITM2C-204ENST00000409704 EIF4G3O43432 1585 aaKnown RBP32.24■■■□□ 2.75
ITM2C-204ENST00000409704 POLA1P09884 1462 aaPredicted RBP32.23■■■□□ 2.75
ITM2C-204ENST00000409704 CUX1P39880 1505 aa32.16■■■□□ 2.74
ITM2C-204ENST00000409704 FGD5Q6ZNL6 1462 aa32.1■■■□□ 2.73
ITM2C-204ENST00000409704 RAD54L2Q9Y4B4 1467 aa32.04■■■□□ 2.72
ITM2C-204ENST00000409704 WDR97A6NE52 1622 aa32■■■□□ 2.71
ITM2C-204ENST00000409704 SOGA1O94964 1423 aa31.99■■■□□ 2.71
ITM2C-204ENST00000409704 AQRO60306 1485 aaKnown RBP eCLIP31.98■■■□□ 2.711e-8■■■□□ 18.9
ITM2C-204ENST00000409704 OSCARQ8IYS5 282 aa31.92■■■□□ 2.7
ITM2C-204ENST00000409704 CHD1O14646 1710 aa31.91■■■□□ 2.7
ITM2C-204ENST00000409704 BIVM-ERCC5R4GMW8 1640 aa31.86■■■□□ 2.69
ITM2C-204ENST00000409704 TDRD9Q8NDG6 1382 aaKnown RBP31.84■■■□□ 2.69
ITM2C-204ENST00000409704 TOP2BQ02880 1626 aa31.82■■■□□ 2.68
ITM2C-204ENST00000409704 SYNJ1O43426 1573 aa31.8■■■□□ 2.68
ITM2C-204ENST00000409704 PBRM1Q86U86 1689 aa31.78■■■□□ 2.68
ITM2C-204ENST00000409704 WRNQ14191 1432 aaPredicted RBP eCLIP31.77■■■□□ 2.68
ITM2C-204ENST00000409704 SNAPC4Q5SXM2 1469 aa31.77■■■□□ 2.68
ITM2C-204ENST00000409704 ABCA10Q8WWZ4 1543 aa31.76■■■□□ 2.68
ITM2C-204ENST00000409704 ABCA5Q8WWZ7 1642 aa31.75■■■□□ 2.67
ITM2C-204ENST00000409704 GRIN2BQ13224 1484 aa31.72■■■□□ 2.67
ITM2C-204ENST00000409704 MAGI1Q96QZ7 1491 aaPredicted RBP31.72■■■□□ 2.67
ITM2C-204ENST00000409704 GAPVD1Q14C86 1478 aa31.67■■■□□ 2.66
ITM2C-204ENST00000409704 RIMBP3CA6NJZ7 1639 aa31.67■■■□□ 2.66
ITM2C-204ENST00000409704 RIMBP3BA6NNM3 1639 aa31.67■■■□□ 2.66
ITM2C-204ENST00000409704 RIMBP3Q9UFD9 1639 aa31.67■■■□□ 2.66
ITM2C-204ENST00000409704 ARHGEF11O15085 1522 aa31.59■■■□□ 2.65
ITM2C-204ENST00000409704 SYNJ2O15056 1496 aa31.58■■■□□ 2.65
ITM2C-204ENST00000409704 FBLN2P98095 1184 aa31.57■■■□□ 2.64
ITM2C-204ENST00000409704 TRIM41Q8WV44 630 aa31.54■■■□□ 2.64
ITM2C-204ENST00000409704 CLASP1Q7Z460 1538 aa31.53■■■□□ 2.64
ITM2C-204ENST00000409704 ADAMTS12P58397 1594 aa31.48■■■□□ 2.63
ITM2C-204ENST00000409704 CHMP7Q8WUX9 453 aaPredicted RBP31.45■■■□□ 2.63
ITM2C-204ENST00000409704 ERICH3Q5RHP9 1530 aa31.39■■■□□ 2.62
ITM2C-204ENST00000409704 GRIN2AQ12879 1464 aa31.34■■■□□ 2.61
ITM2C-204ENST00000409704 ARAP1Q96P48 1450 aa31.33■■■□□ 2.61
ITM2C-204ENST00000409704 FHAD1B1AJZ9 1412 aa31.29■■■□□ 2.6
ITM2C-204ENST00000409704 CEP170Q5SW79 1584 aa31.26■■■□□ 2.59
ITM2C-204ENST00000409704 NUP160Q12769 1436 aa31.22■■■□□ 2.59
ITM2C-204ENST00000409704 CYB5RLQ6IPT4 315 aa31.13■■■□□ 2.57
ITM2C-204ENST00000409704 KIF27Q86VH2 1401 aa31.11■■■□□ 2.57
ITM2C-204ENST00000409704 CUL7Q14999 1698 aa31.1■■■□□ 2.57
ITM2C-204ENST00000409704 SHROOM2Q13796 1616 aa31.09■■■□□ 2.57
ITM2C-204ENST00000409704 RUSC2Q8N2Y8 1516 aa31.04■■■□□ 2.56
ITM2C-204ENST00000409704 ERCC6L2Q5T890 1561 aa31.03■■■□□ 2.56
ITM2C-204ENST00000409704 IGF1RP08069 1367 aa30.97■■■□□ 2.55
ITM2C-204ENST00000409704 PRG4Q92954 1404 aaPredicted RBP30.81■■■□□ 2.52
Retrieved 100 of 20,778 RNA–protein pairs in 7.3 ms