Protein–RNA interactions for Protein: P35498

SCN1A, Sodium channel protein type 1 subunit alpha, humanhuman

Predictions only

Length 2,009 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1AP35498 AC091060.1-201ENST00000623524 1766 ntBASIC25.55■■□□□ 1.68
SCN1AP35498 SOHLH1-202ENST00000425225 1411 ntAPPRIS ALT2 TSL 5 BASIC25.55■■□□□ 1.68
SCN1AP35498 TMEM203-201ENST00000343666 1557 ntAPPRIS P1 BASIC25.55■■□□□ 1.68
SCN1AP35498 KAT8-202ENST00000448516 1789 ntTSL 1 (best) BASIC25.54■■□□□ 1.68
SCN1AP35498 CT47A7-201ENST00000434883 1288 ntAPPRIS P1 TSL 2 BASIC25.54■■□□□ 1.68
SCN1AP35498 AC022616.5-201ENST00000518796 181 ntBASIC25.54■■□□□ 1.68
SCN1AP35498 PLEKHO1-202ENST00000369126 1809 ntTSL 1 (best) BASIC25.54■■□□□ 1.68
SCN1AP35498 RFWD2-201ENST00000308769 2124 ntTSL 1 (best) BASIC25.54■■□□□ 1.68
SCN1AP35498 CEND1-201ENST00000330106 1649 ntAPPRIS P1 TSL 1 (best) BASIC25.54■■□□□ 1.68
SCN1AP35498 RINL-202ENST00000591812 1910 ntAPPRIS ALT2 TSL 2 BASIC25.54■■□□□ 1.68
SCN1AP35498 C5orf38-202ENST00000397835 681 ntAPPRIS ALT2 TSL 5 BASIC25.54■■□□□ 1.68
SCN1AP35498 PKNOX2-AS1-201ENST00000532316 586 ntTSL 3 BASIC25.54■■□□□ 1.68
SCN1AP35498 MMP28-203ENST00000612672 1092 ntTSL 1 (best) BASIC25.54■■□□□ 1.68
SCN1AP35498 EPM2A-202ENST00000435470 1278 ntTSL 1 (best) BASIC25.53■■□□□ 1.68
SCN1AP35498 LYSMD2-202ENST00000454181 1228 ntTSL 1 (best) BASIC25.53■■□□□ 1.68
SCN1AP35498 ATP11B-209ENST00000493826 963 ntTSL 1 (best) BASIC25.53■■□□□ 1.68
SCN1AP35498 TMPO-AS1-201ENST00000546421 738 ntTSL 5 BASIC25.53■■□□□ 1.68
SCN1AP35498 MMP25-AS1-209ENST00000576250 779 ntTSL 5 BASIC25.53■■□□□ 1.68
SCN1AP35498 TSPAN10-204ENST00000611590 1068 ntAPPRIS ALT2 TSL 1 (best) BASIC25.53■■□□□ 1.68
SCN1AP35498 SLC25A1-202ENST00000451283 1514 ntTSL 2 BASIC25.53■■□□□ 1.68
SCN1AP35498 DUSP8P4-201ENST00000399538 1761 ntBASIC25.53■■□□□ 1.68
SCN1AP35498 MAD2L2-201ENST00000235310 1860 ntAPPRIS P1 TSL 2 BASIC25.53■■□□□ 1.68
SCN1AP35498 TMUB1-203ENST00000462940 1549 ntAPPRIS P1 TSL 1 (best) BASIC25.53■■□□□ 1.68
SCN1AP35498 LONRF2P2-201ENST00000439212 571 ntBASIC25.53■■□□□ 1.68
SCN1AP35498 RUNDC3A-201ENST00000225441 1821 ntTSL 1 (best) BASIC25.52■■□□□ 1.68
SCN1AP35498 CCR10-201ENST00000332438 1773 ntAPPRIS P1 TSL 1 (best) BASIC25.52■■□□□ 1.68
SCN1AP35498 RAB20-201ENST00000267328 1518 ntAPPRIS P1 TSL 1 (best) BASIC25.52■■□□□ 1.68
SCN1AP35498 HOMER3-201ENST00000221222 1384 ntAPPRIS ALT1 TSL 5 BASIC25.51■■□□□ 1.67
SCN1AP35498 FBXL6-202ENST00000455319 1727 ntAPPRIS ALT2 TSL 1 (best) BASIC25.5■■□□□ 1.67
SCN1AP35498 FBXL20-203ENST00000577399 1620 ntTSL 5 BASIC25.5■■□□□ 1.67
SCN1AP35498 RFLNA-202ENST00000338359 652 ntAPPRIS P2 TSL 1 (best) BASIC25.5■■□□□ 1.67
SCN1AP35498 YPEL1-202ENST00000403503 466 ntTSL 3 BASIC25.5■■□□□ 1.67
SCN1AP35498 SLC16A11-202ENST00000447225 1779 ntAPPRIS ALT2 TSL 5 BASIC25.5■■□□□ 1.67
SCN1AP35498 BCL7C-202ENST00000380317 2409 ntTSL 1 (best) BASIC25.5■■□□□ 1.67
SCN1AP35498 EME2-205ENST00000568449 1234 ntAPPRIS P1 TSL 1 (best) BASIC25.49■■□□□ 1.67
SCN1AP35498 NDEL1-219ENST00000585098 454 ntTSL 3 BASIC25.49■■□□□ 1.67
SCN1AP35498 ZNF688-203ENST00000563276 1492 ntTSL 2 BASIC25.49■■□□□ 1.67
SCN1AP35498 HMG20B-202ENST00000333651 1596 ntAPPRIS P1 TSL 1 (best) BASIC25.49■■□□□ 1.67
SCN1AP35498 CTAG1B-201ENST00000328435 748 ntAPPRIS P1 TSL 1 (best) BASIC25.49■■□□□ 1.67
SCN1AP35498 PRR7-204ENST00000510492 1285 ntAPPRIS P1 TSL 1 (best) BASIC25.49■■□□□ 1.67
SCN1AP35498 CTAG1A-202ENST00000599837 748 ntAPPRIS P1 TSL 1 (best) BASIC25.49■■□□□ 1.67
SCN1AP35498 SLC35A2-209ENST00000452555 1563 ntTSL 2 BASIC25.49■■□□□ 1.67
SCN1AP35498 CADPS-215ENST00000490353 2669 ntTSL 5 BASIC25.48■■□□□ 1.67
SCN1AP35498 SDS-201ENST00000257549 1606 ntAPPRIS P1 TSL 2 BASIC25.48■■□□□ 1.67
SCN1AP35498 BOD1-202ENST00000311086 1562 ntAPPRIS P1 TSL 1 (best) BASIC25.48■■□□□ 1.67
SCN1AP35498 C16orf87-201ENST00000285697 1585 ntAPPRIS P1 TSL 1 (best) BASIC25.47■■□□□ 1.67
SCN1AP35498 YBX1P4-201ENST00000392794 808 ntBASIC25.47■■□□□ 1.67
SCN1AP35498 CFAP77-202ENST00000393215 901 ntAPPRIS ALT2 TSL 5 BASIC25.47■■□□□ 1.67
SCN1AP35498 CDCA5-202ENST00000404147 1012 ntTSL 2 BASIC25.47■■□□□ 1.67
SCN1AP35498 ZNF74-204ENST00000405993 1839 ntAPPRIS ALT2 TSL 5 BASIC25.47■■□□□ 1.67
SCN1AP35498 PDSS1-201ENST00000376215 1626 ntAPPRIS P1 TSL 1 (best) BASIC25.47■■□□□ 1.67
SCN1AP35498 NFU1-203ENST00000410022 1467 ntAPPRIS P3 TSL 1 (best) BASIC25.47■■□□□ 1.67
SCN1AP35498 ZNF606-203ENST00000547121 1196 ntTSL 2 BASIC25.47■■□□□ 1.67
SCN1AP35498 AL590094.1-201ENST00000635581 706 ntTSL 2 BASIC25.47■■□□□ 1.67
SCN1AP35498 CACNG6-203ENST00000352529 1635 ntTSL 5 BASIC25.47■■□□□ 1.67
SCN1AP35498 CITED4-201ENST00000372638 1316 ntAPPRIS P1 BASIC25.46■■□□□ 1.67
SCN1AP35498 GPR160-201ENST00000355897 2039 ntAPPRIS P1 TSL 1 (best) BASIC25.46■■□□□ 1.67
SCN1AP35498 TPI1-210ENST00000613953 1460 ntTSL 1 (best) BASIC25.45■■□□□ 1.67
SCN1AP35498 TMEM238-201ENST00000444469 1000 ntAPPRIS P1 TSL 1 (best) BASIC25.45■■□□□ 1.66
SCN1AP35498 RAET1E-AS1-203ENST00000606915 1210 ntTSL 1 (best) BASIC25.45■■□□□ 1.66
SCN1AP35498 ALG2-203ENST00000476832 1880 ntAPPRIS P1 TSL 1 (best) BASIC25.45■■□□□ 1.66
SCN1AP35498 ZNF219-201ENST00000360947 3071 ntAPPRIS P1 TSL 1 (best) BASIC25.45■■□□□ 1.66
SCN1AP35498 PPM1B-202ENST00000345249 1713 ntTSL 1 (best) BASIC25.45■■□□□ 1.66
SCN1AP35498 MDK-203ENST00000395566 828 ntAPPRIS P2 TSL 1 (best) BASIC25.44■■□□□ 1.66
SCN1AP35498 PRMT5-228ENST00000627278 129 ntTSL 5 BASIC25.44■■□□□ 1.66
SCN1AP35498 AL035685.1-201ENST00000636663 812 ntBASIC25.44■■□□□ 1.66
SCN1AP35498 KLHDC9-203ENST00000392192 1333 ntTSL 1 (best) BASIC25.44■■□□□ 1.66
SCN1AP35498 SCARA5-204ENST00000524352 1945 ntTSL 1 (best) BASIC25.44■■□□□ 1.66
SCN1AP35498 PDPK1-204ENST00000441549 1729 ntTSL 1 (best) BASIC25.44■■□□□ 1.66
SCN1AP35498 TMEM104-205ENST00000582773 1740 ntTSL 2 BASIC25.44■■□□□ 1.66
SCN1AP35498 TK2-216ENST00000564917 1156 ntTSL 3 BASIC25.44■■□□□ 1.66
SCN1AP35498 CFAP99-207ENST00000635017 2298 ntTSL 5 BASIC25.43■■□□□ 1.66
SCN1AP35498 AC078883.1-201ENST00000442417 950 ntTSL 3 BASIC25.43■■□□□ 1.66
SCN1AP35498 EBF4-210ENST00000609451 2012 ntAPPRIS ALT1 TSL 5 BASIC25.43■■□□□ 1.66
SCN1AP35498 AQP10-201ENST00000324978 1791 ntAPPRIS P1 TSL 1 (best) BASIC25.43■■□□□ 1.66
SCN1AP35498 TSPOAP1-AS1-205ENST00000580022 2337 ntTSL 2 BASIC25.43■■□□□ 1.66
SCN1AP35498 TMCO6-201ENST00000252100 1834 ntTSL 1 (best) BASIC25.43■■□□□ 1.66
SCN1AP35498 AL160276.1-201ENST00000636672 1312 ntAPPRIS P1 TSL 5 BASIC25.42■■□□□ 1.66
SCN1AP35498 BTBD6-205ENST00000536364 1973 ntAPPRIS P2 TSL 5 BASIC25.42■■□□□ 1.66
SCN1AP35498 RBM33-201ENST00000287912 1404 ntTSL 2 BASIC25.42■■□□□ 1.66
SCN1AP35498 ZNF276-202ENST00000443381 2267 ntAPPRIS P1 TSL 1 (best) BASIC25.42■■□□□ 1.66
SCN1AP35498 FBXO7-206ENST00000452138 1535 ntTSL 2 BASIC25.42■■□□□ 1.66
SCN1AP35498 PRTG-204ENST00000561292 833 ntTSL 3 BASIC25.41■■□□□ 1.66
SCN1AP35498 PKIB-205ENST00000368452 1398 ntAPPRIS P1 TSL 1 (best) BASIC25.41■■□□□ 1.66
SCN1AP35498 FAM162B-201ENST00000368557 1036 ntAPPRIS P1 TSL 1 (best) BASIC25.41■■□□□ 1.66
SCN1AP35498 AC138207.2-201ENST00000583377 492 ntTSL 2 BASIC25.41■■□□□ 1.66
SCN1AP35498 GTPBP3-202ENST00000358792 1951 ntAPPRIS P4 TSL 2 BASIC25.4■■□□□ 1.66
SCN1AP35498 PPP4C-214ENST00000627746 1301 ntTSL 5 BASIC25.4■■□□□ 1.66
SCN1AP35498 CHST13-201ENST00000319340 1789 ntAPPRIS P1 TSL 1 (best) BASIC25.4■■□□□ 1.66
SCN1AP35498 HNRNPD-203ENST00000353341 1585 ntAPPRIS ALT1 TSL 1 (best) BASIC25.4■■□□□ 1.66
SCN1AP35498 SAC3D1-201ENST00000398846 1566 ntAPPRIS P1 TSL 1 (best) BASIC25.4■■□□□ 1.66
SCN1AP35498 TSPAN4-203ENST00000397397 1423 ntAPPRIS P1 TSL 1 (best) BASIC25.4■■□□□ 1.66
SCN1AP35498 PLEK2-201ENST00000216446 1549 ntAPPRIS P1 TSL 1 (best) BASIC25.4■■□□□ 1.66
SCN1AP35498 EVA1B-201ENST00000270824 1054 ntAPPRIS P1 TSL 2 BASIC25.4■■□□□ 1.66
SCN1AP35498 MIR4281-201ENST00000580852 62 ntBASIC25.4■■□□□ 1.66
SCN1AP35498 RNF166-201ENST00000312838 1883 ntAPPRIS P1 TSL 1 (best) BASIC25.4■■□□□ 1.66
SCN1AP35498 RCAN1-201ENST00000313806 2490 ntTSL 1 (best) BASIC25.4■■□□□ 1.66
SCN1AP35498 MROH6-210ENST00000533679 1921 ntAPPRIS ALT2 TSL 1 (best) BASIC25.4■■□□□ 1.66
SCN1AP35498 NPHS2-202ENST00000367616 1670 ntTSL 1 (best) BASIC25.4■■□□□ 1.66
SCN1AP35498 GPS1-204ENST00000392358 2276 ntTSL 1 (best) BASIC25.4■■□□□ 1.66
Retrieved 100 of 98,524 protein–RNA pairs in 17.3 ms