Protein–RNA interactions for Protein: P04114

APOB, Apolipoprotein B-100, humanhuman

Known RBP Predictions only

Length 4,563 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
APOBP04114 WDR38-203ENST00000618744 1270 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
APOBP04114 PRADC1-201ENST00000258083 1083 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
APOBP04114 RPP38-201ENST00000378197 1457 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
APOBP04114 PCK2-202ENST00000396973 1830 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
APOBP04114 ATP10A-207ENST00000619904 988 ntTSL 5 BASIC15.16■□□□□ 0.02
APOBP04114 AL355001.2-201ENST00000620617 1191 ntBASIC15.16■□□□□ 0.02
APOBP04114 PNCK-204ENST00000370150 1612 ntAPPRIS P1 TSL 5 BASIC15.16■□□□□ 0.02
APOBP04114 HYI-206ENST00000372434 1025 ntTSL 5 BASIC15.16■□□□□ 0.02
APOBP04114 HNRNPUL1-222ENST00000617774 451 ntTSL 5 BASIC15.16■□□□□ 0.02
APOBP04114 CDK2AP1-201ENST00000261692 1625 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
APOBP04114 MIR939-201ENST00000401314 82 ntBASIC15.16■□□□□ 0.02
APOBP04114 NPW-201ENST00000329610 498 ntAPPRIS P2 TSL 1 (best) BASIC15.15■□□□□ 0.02
APOBP04114 IL20RA-202ENST00000367746 1244 ntTSL 2 BASIC15.15■□□□□ 0.02
APOBP04114 GPX4-213ENST00000622390 1002 ntTSL 5 BASIC15.15■□□□□ 0.02
APOBP04114 CBLN1-201ENST00000219197 2435 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
APOBP04114 LRRC14B-201ENST00000328278 1573 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.02
APOBP04114 GSX1-201ENST00000302945 1663 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
APOBP04114 SLC35A1-203ENST00000369557 1653 ntTSL 2 BASIC15.14■□□□□ 0.01
APOBP04114 C1QL1-201ENST00000253407 1295 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
APOBP04114 FAIM-202ENST00000360570 1157 ntAPPRIS ALT1 TSL 3 BASIC15.14■□□□□ 0.01
APOBP04114 NDUFS3-206ENST00000528192 561 ntTSL 5 BASIC15.14■□□□□ 0.01
APOBP04114 SDSL-202ENST00000403593 1449 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
APOBP04114 BX255925.1-201ENST00000566954 1854 ntBASIC15.14■□□□□ 0.01
APOBP04114 KRTAP5-4-202ENST00000616115 660 ntAPPRIS ALT2 TSL 5 BASIC15.14■□□□□ 0.01
APOBP04114 CIRBP-216ENST00000588090 1459 ntAPPRIS P3 TSL 3 BASIC15.14■□□□□ 0.01
APOBP04114 DHRS11-215ENST00000618403 1598 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
APOBP04114 AIPL1-206ENST00000571740 1202 ntAPPRIS ALT2 TSL 1 (best) BASIC15.14■□□□□ 0.01
APOBP04114 AGAP3-211ENST00000473312 2039 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
APOBP04114 POU3F1-201ENST00000373012 2184 ntAPPRIS P1 BASIC15.14■□□□□ 0.01
APOBP04114 AC090192.1-201ENST00000517740 490 ntBASIC15.14■□□□□ 0.01
APOBP04114 RAD21-AS1-201ENST00000521487 2010 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
APOBP04114 TRIM7-202ENST00000334421 1228 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
APOBP04114 SERGEF-219ENST00000532265 1124 ntTSL 2 BASIC15.13■□□□□ 0.01
APOBP04114 MXRA7-203ENST00000449428 1881 ntAPPRIS ALT2 TSL 1 (best) BASIC15.13■□□□□ 0.01
APOBP04114 CAPNS1-215ENST00000628018 1509 ntAPPRIS ALT2 TSL 5 BASIC15.13■□□□□ 0.01
APOBP04114 EIF6-201ENST00000374436 1252 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
APOBP04114 PBX2P1-201ENST00000493219 1291 ntBASIC15.13■□□□□ 0.01
APOBP04114 AP001330.3-201ENST00000520123 633 ntBASIC15.13■□□□□ 0.01
APOBP04114 HSPE1-203ENST00000409729 478 ntTSL 2 BASIC15.13■□□□□ 0.01
APOBP04114 AC105265.2-201ENST00000467189 838 ntBASIC15.13■□□□□ 0.01
APOBP04114 CYC1-201ENST00000318911 1240 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
APOBP04114 FAM136A-202ENST00000430566 885 ntTSL 3 BASIC15.12■□□□□ 0.01
APOBP04114 MYL5-208ENST00000511290 781 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
APOBP04114 PICSAR-201ENST00000615826 733 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
APOBP04114 LRRC1-201ENST00000370882 808 ntTSL 3 BASIC15.12■□□□□ 0.01
APOBP04114 MOSPD3-203ENST00000393950 1191 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
APOBP04114 AC097381.1-201ENST00000429019 1296 ntBASIC15.12■□□□□ 0.01
APOBP04114 STMN4-201ENST00000265770 1250 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
APOBP04114 RASGEF1B-208ENST00000510780 539 ntTSL 3 BASIC15.12■□□□□ 0.01
APOBP04114 RASGEF1B-209ENST00000512343 498 ntTSL 3 BASIC15.12■□□□□ 0.01
APOBP04114 RPRD1A-207ENST00000588737 1264 ntTSL 2 BASIC15.12■□□□□ 0.01
APOBP04114 GAK-223ENST00000628912 497 ntTSL 5 BASIC15.12■□□□□ 0.01
APOBP04114 HDGF-210ENST00000537739 2073 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
APOBP04114 TFPT-201ENST00000391757 774 ntTSL 5 BASIC15.11■□□□□ 0.01
APOBP04114 TFPT-202ENST00000391758 804 ntAPPRIS ALT2 TSL 1 (best) BASIC15.11■□□□□ 0.01
APOBP04114 GNAI2-202ENST00000313601 2464 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
APOBP04114 LINC01970-201ENST00000581489 1810 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
APOBP04114 AL356740.2-201ENST00000601559 647 ntBASIC15.11■□□□□ 0.01
APOBP04114 CD72-202ENST00000378430 585 ntTSL 3 BASIC15.11■□□□□ 0.01
APOBP04114 H2AFB1-201ENST00000620016 587 ntAPPRIS P1 BASIC15.11■□□□□ 0.01
APOBP04114 SNAI3-AS1-204ENST00000567997 2048 ntBASIC15.11■□□□□ 0.01
APOBP04114 WTAP-206ENST00000621533 2109 ntAPPRIS P1 TSL 2 BASIC15.11■□□□□ 0.01
APOBP04114 NAA38-201ENST00000333775 999 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
APOBP04114 KRTAP5-4-201ENST00000399682 1181 ntAPPRIS P5 BASIC15.1■□□□□ 0.01
APOBP04114 LRFN4-202ENST00000393952 1550 ntTSL 5 BASIC15.1■□□□□ 0.01
APOBP04114 SNRNP70-206ENST00000598441 1574 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
APOBP04114 CCDC61-204ENST00000595358 1817 ntAPPRIS P2 TSL 5 BASIC15.1■□□□□ 0.01
APOBP04114 AKT1S1-201ENST00000344175 1760 ntAPPRIS P1 TSL 3 BASIC15.1■□□□□ 0.01
APOBP04114 FAIM-203ENST00000393034 927 ntAPPRIS P3 TSL 2 BASIC15.1■□□□□ 0.01
APOBP04114 PRICKLE4-201ENST00000394259 939 ntAPPRIS ALT2 TSL 5 BASIC15.1■□□□□ 0.01
APOBP04114 HMG20B-202ENST00000333651 1596 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
APOBP04114 AC243829.1-202ENST00000618848 486 ntTSL 3 BASIC15.09■□□□□ 0.01
APOBP04114 AL022341.2-201ENST00000573609 1417 ntTSL 3 BASIC15.09■□□□□ 0.01
APOBP04114 CLK2-201ENST00000355560 2120 ntAPPRIS ALT1 TSL 5 BASIC15.09■□□□□ 0.01
APOBP04114 MCRIP1-202ENST00000457257 942 ntTSL 3 BASIC15.09■□□□□ 0.01
APOBP04114 SIGMAR1-203ENST00000378892 1743 ntTSL 2 BASIC15.09■□□□□ 0.01
APOBP04114 DHRS13-201ENST00000378895 1921 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
APOBP04114 FRMD8-208ENST00000531296 366 ntTSL 1 (best) BASIC15.09■□□□□ 0.01
APOBP04114 EXOG-217ENST00000630638 197 ntTSL 5 BASIC15.09■□□□□ 0.01
APOBP04114 AL136967.2-201ENST00000623968 743 ntBASIC15.09■□□□□ 0.01
APOBP04114 LYPD6B-203ENST00000409642 1577 ntAPPRIS P3 TSL 1 (best) BASIC15.08■□□□□ 0.01
APOBP04114 CCDC107-203ENST00000378407 899 ntAPPRIS ALT2 TSL 2 BASIC15.08■□□□□ 0.01
APOBP04114 SIRT3-201ENST00000382743 2543 ntAPPRIS P2 TSL 1 (best) BASIC15.08■□□□□ 0
APOBP04114 UBE2Q2P2-204ENST00000618775 648 ntTSL 1 (best) BASIC15.08■□□□□ 0
APOBP04114 SYT8-201ENST00000341958 1556 ntAPPRIS ALT2 TSL 5 BASIC15.08■□□□□ 0
APOBP04114 MXD3-201ENST00000423571 1534 ntTSL 2 BASIC15.08■□□□□ 0
APOBP04114 LYPD2-201ENST00000359228 594 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0
APOBP04114 YPEL1-202ENST00000403503 466 ntTSL 3 BASIC15.08■□□□□ 0
APOBP04114 DGAT1-201ENST00000332324 1473 ntTSL 5 BASIC15.08■□□□□ 0
APOBP04114 GNAS-211ENST00000371095 1931 ntAPPRIS ALT1 TSL 1 (best) BASIC15.08■□□□□ 0
APOBP04114 NDUFA10-204ENST00000407129 699 ntTSL 1 (best) BASIC15.07■□□□□ 0
APOBP04114 CLTA-206ENST00000466396 695 ntTSL 2 BASIC15.07■□□□□ 0
APOBP04114 AC008105.3-201ENST00000586376 844 ntTSL 3 BASIC15.07■□□□□ 0
APOBP04114 MIR17HG-201ENST00000400282 931 ntTSL 1 (best) BASIC15.07■□□□□ 0
APOBP04114 GLI3-203ENST00000437480 451 ntTSL 2 BASIC15.07■□□□□ 0
APOBP04114 FGF22-201ENST00000215530 1311 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
APOBP04114 NRARP-201ENST00000356628 1770 ntAPPRIS P1 BASIC15.07■□□□□ 0
APOBP04114 LLGL2-202ENST00000375227 1374 ntTSL 1 (best) BASIC15.07■□□□□ 0
APOBP04114 CCDC166-201ENST00000542437 1320 ntAPPRIS P1 TSL 2 BASIC15.06■□□□□ 0
APOBP04114 SPAG16-201ENST00000272898 1059 ntTSL 5 BASIC15.06■□□□□ 0
Retrieved 100 of 98,524 protein–RNA pairs in 7.5 ms