Protein–RNA interactions for Protein: A6NCK2

TRIM43B, Tripartite motif-containing protein 43B, humanhuman

Predictions only

Length 446 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM43BA6NCK2 DCBLD1-201ENST00000296955 1979 ntAPPRIS P2 TSL 1 (best) BASIC26.31■■□□□ 1.8
TRIM43BA6NCK2 EEF1D-203ENST00000419152 1452 ntAPPRIS ALT2 TSL 5 BASIC26.31■■□□□ 1.8
TRIM43BA6NCK2 CIRBP-216ENST00000588090 1459 ntAPPRIS P3 TSL 3 BASIC26.31■■□□□ 1.8
TRIM43BA6NCK2 AC142381.2-201ENST00000566120 298 ntBASIC26.31■■□□□ 1.8
TRIM43BA6NCK2 MCRIP1-210ENST00000576431 577 ntTSL 5 BASIC26.31■■□□□ 1.8
TRIM43BA6NCK2 SNRNP70-206ENST00000598441 1574 ntAPPRIS P1 TSL 1 (best) BASIC26.31■■□□□ 1.8
TRIM43BA6NCK2 CDK2AP1-201ENST00000261692 1625 ntAPPRIS P1 TSL 1 (best) BASIC26.31■■□□□ 1.8
TRIM43BA6NCK2 DGAT1-201ENST00000332324 1473 ntTSL 5 BASIC26.3■■□□□ 1.8
TRIM43BA6NCK2 RPP38-201ENST00000378197 1457 ntAPPRIS P1 TSL 1 (best) BASIC26.3■■□□□ 1.8
TRIM43BA6NCK2 NPW-201ENST00000329610 498 ntAPPRIS P2 TSL 1 (best) BASIC26.3■■□□□ 1.8
TRIM43BA6NCK2 LRRC1-201ENST00000370882 808 ntTSL 3 BASIC26.3■■□□□ 1.8
TRIM43BA6NCK2 LINC01632-201ENST00000615763 496 ntTSL 3 BASIC26.3■■□□□ 1.8
TRIM43BA6NCK2 YPEL1-202ENST00000403503 466 ntTSL 3 BASIC26.29■■□□□ 1.8
TRIM43BA6NCK2 CLTA-204ENST00000433436 1235 ntAPPRIS ALT1 TSL 1 (best) BASIC26.29■■□□□ 1.8
TRIM43BA6NCK2 SSR2-210ENST00000480567 895 ntAPPRIS P1 TSL 2 BASIC26.29■■□□□ 1.8
TRIM43BA6NCK2 CLTA-209ENST00000538225 1181 ntTSL 2 BASIC26.29■■□□□ 1.8
TRIM43BA6NCK2 CLTA-210ENST00000540080 989 ntTSL 2 BASIC26.29■■□□□ 1.8
TRIM43BA6NCK2 GAK-223ENST00000628912 497 ntTSL 5 BASIC26.29■■□□□ 1.8
TRIM43BA6NCK2 MEN1-204ENST00000377313 1871 ntAPPRIS P3 TSL 2 BASIC26.29■■□□□ 1.8
TRIM43BA6NCK2 PLEK2-201ENST00000216446 1549 ntAPPRIS P1 TSL 1 (best) BASIC26.29■■□□□ 1.8
TRIM43BA6NCK2 PXDC1-202ENST00000380283 2190 ntAPPRIS P1 TSL 1 (best) BASIC26.29■■□□□ 1.8
TRIM43BA6NCK2 CLPSL2-201ENST00000360454 488 ntAPPRIS ALT2 TSL 1 (best) BASIC26.28■■□□□ 1.8
TRIM43BA6NCK2 EIF6-201ENST00000374436 1252 ntAPPRIS P1 TSL 1 (best) BASIC26.28■■□□□ 1.8
TRIM43BA6NCK2 MYL5-208ENST00000511290 781 ntTSL 1 (best) BASIC26.28■■□□□ 1.8
TRIM43BA6NCK2 TMEM80-207ENST00000608174 800 ntTSL 5 BASIC26.28■■□□□ 1.8
TRIM43BA6NCK2 AC135279.3-201ENST00000610945 1311 ntBASIC26.28■■□□□ 1.8
TRIM43BA6NCK2 SUMF1-202ENST00000383843 1447 ntTSL 2 BASIC26.28■■□□□ 1.8
TRIM43BA6NCK2 CGREF1-203ENST00000402394 1906 ntAPPRIS P2 TSL 2 BASIC26.27■■□□□ 1.8
TRIM43BA6NCK2 ACBD4-216ENST00000619916 1276 ntTSL 5 BASIC26.27■■□□□ 1.8
TRIM43BA6NCK2 PSKH1-202ENST00000570631 1509 ntTSL 1 (best) BASIC26.27■■□□□ 1.8
TRIM43BA6NCK2 LRFN4-202ENST00000393952 1550 ntTSL 5 BASIC26.27■■□□□ 1.8
TRIM43BA6NCK2 EPM2A-208ENST00000618445 1694 ntTSL 1 (best) BASIC26.26■■□□□ 1.79
TRIM43BA6NCK2 MIR17HG-201ENST00000400282 931 ntTSL 1 (best) BASIC26.26■■□□□ 1.79
TRIM43BA6NCK2 RASGEF1B-208ENST00000510780 539 ntTSL 3 BASIC26.26■■□□□ 1.79
TRIM43BA6NCK2 RASGEF1B-209ENST00000512343 498 ntTSL 3 BASIC26.26■■□□□ 1.79
TRIM43BA6NCK2 AP006621.1-201ENST00000532946 536 ntTSL 5 BASIC26.26■■□□□ 1.79
TRIM43BA6NCK2 ZNRF1-205ENST00000566250 1069 ntTSL 1 (best) BASIC26.26■■□□□ 1.79
TRIM43BA6NCK2 ZNRF1-206ENST00000567962 1234 ntAPPRIS P1 TSL 1 (best) BASIC26.26■■□□□ 1.79
TRIM43BA6NCK2 RPRD1A-207ENST00000588737 1264 ntTSL 2 BASIC26.26■■□□□ 1.79
TRIM43BA6NCK2 AL031432.3-201ENST00000607698 485 ntBASIC26.26■■□□□ 1.79
TRIM43BA6NCK2 BX255925.1-201ENST00000566954 1854 ntBASIC26.25■■□□□ 1.79
TRIM43BA6NCK2 ST7L-206ENST00000369666 1815 ntTSL 1 (best) BASIC26.25■■□□□ 1.79
TRIM43BA6NCK2 SPAG16-201ENST00000272898 1059 ntTSL 5 BASIC26.25■■□□□ 1.79
TRIM43BA6NCK2 CD72-202ENST00000378430 585 ntTSL 3 BASIC26.25■■□□□ 1.79
TRIM43BA6NCK2 TSGA13-204ENST00000456951 2046 ntAPPRIS P2 TSL 2 BASIC26.25■■□□□ 1.79
TRIM43BA6NCK2 HDGF-210ENST00000537739 2073 ntAPPRIS P1 TSL 1 (best) BASIC26.24■■□□□ 1.79
TRIM43BA6NCK2 TRIM7-202ENST00000334421 1228 ntTSL 1 (best) BASIC26.24■■□□□ 1.79
TRIM43BA6NCK2 FGD5-AS1-204ENST00000430166 1184 ntTSL 2 BASIC26.24■■□□□ 1.79
TRIM43BA6NCK2 EIF3J-203ENST00000535391 925 ntTSL 2 BASIC26.24■■□□□ 1.79
TRIM43BA6NCK2 AC104564.3-201ENST00000582367 638 ntBASIC26.24■■□□□ 1.79
TRIM43BA6NCK2 AC011551.1-201ENST00000614101 683 ntBASIC26.24■■□□□ 1.79
TRIM43BA6NCK2 WTAP-206ENST00000621533 2109 ntAPPRIS P1 TSL 2 BASIC26.23■■□□□ 1.79
TRIM43BA6NCK2 CDKN2D-201ENST00000335766 1086 ntAPPRIS P1 TSL 1 (best) BASIC26.23■■□□□ 1.79
TRIM43BA6NCK2 IL20RA-202ENST00000367746 1244 ntTSL 2 BASIC26.23■■□□□ 1.79
TRIM43BA6NCK2 SUDS3P1-201ENST00000505831 966 ntBASIC26.23■■□□□ 1.79
TRIM43BA6NCK2 NDUFS3-206ENST00000528192 561 ntTSL 5 BASIC26.23■■□□□ 1.79
TRIM43BA6NCK2 BCKDHB-202ENST00000356489 1514 ntAPPRIS P1 TSL 1 (best) BASIC26.23■■□□□ 1.79
TRIM43BA6NCK2 PNCK-204ENST00000370150 1612 ntAPPRIS P1 TSL 5 BASIC26.22■■□□□ 1.79
TRIM43BA6NCK2 MADCAM1-202ENST00000346144 1309 ntAPPRIS ALT2 TSL 1 (best) BASIC26.22■■□□□ 1.79
TRIM43BA6NCK2 LGR4-203ENST00000480977 492 ntTSL 2 BASIC26.22■■□□□ 1.79
TRIM43BA6NCK2 NRL-205ENST00000560550 788 ntTSL 1 (best) BASIC26.22■■□□□ 1.79
TRIM43BA6NCK2 HOXA11-AS1_1.1-201ENST00000613939 98 ntBASIC26.22■■□□□ 1.79
TRIM43BA6NCK2 CUL4A-202ENST00000375440 2364 ntAPPRIS P1 TSL 1 (best) BASIC26.22■■□□□ 1.79
TRIM43BA6NCK2 SLC39A3-201ENST00000269740 1502 ntAPPRIS P1 TSL 1 (best) BASIC26.22■■□□□ 1.79
TRIM43BA6NCK2 SLC35A2-207ENST00000445167 1739 ntTSL 1 (best) BASIC26.22■■□□□ 1.79
TRIM43BA6NCK2 UNC93B3-201ENST00000308076 687 ntBASIC26.21■■□□□ 1.79
TRIM43BA6NCK2 CDKN2A-210ENST00000530628 748 ntAPPRIS P1 TSL 5 BASIC26.21■■□□□ 1.79
TRIM43BA6NCK2 CDH23-208ENST00000461841 2000 ntTSL 5 BASIC26.21■■□□□ 1.79
TRIM43BA6NCK2 CARD19-201ENST00000375464 855 ntAPPRIS P1 TSL 1 (best) BASIC26.2■■□□□ 1.78
TRIM43BA6NCK2 CCDC107-203ENST00000378407 899 ntAPPRIS ALT2 TSL 2 BASIC26.2■■□□□ 1.78
TRIM43BA6NCK2 PARD6B-202ENST00000396039 522 ntTSL 1 (best) BASIC26.2■■□□□ 1.78
TRIM43BA6NCK2 KRTAP5-4-201ENST00000399682 1181 ntAPPRIS P5 BASIC26.2■■□□□ 1.78
TRIM43BA6NCK2 MIR5787-201ENST00000611784 55 ntBASIC26.2■■□□□ 1.78
TRIM43BA6NCK2 CPTP-201ENST00000343938 2190 ntAPPRIS P1 TSL 2 BASIC26.2■■□□□ 1.78
TRIM43BA6NCK2 VSTM2L-202ENST00000373461 1959 ntAPPRIS P1 TSL 1 (best) BASIC26.2■■□□□ 1.78
TRIM43BA6NCK2 KCTD17-202ENST00000403888 1763 ntAPPRIS ALT2 TSL 1 (best) BASIC26.2■■□□□ 1.78
TRIM43BA6NCK2 CA9-204ENST00000617161 1374 ntTSL 1 (best) BASIC26.2■■□□□ 1.78
TRIM43BA6NCK2 CCND3-203ENST00000372991 2085 ntAPPRIS P1 TSL 1 (best) BASIC26.19■■□□□ 1.78
TRIM43BA6NCK2 LFNG-201ENST00000222725 2377 ntAPPRIS P4 TSL 5 BASIC26.19■■□□□ 1.78
TRIM43BA6NCK2 RALB-203ENST00000420510 1252 ntAPPRIS P1 TSL 2 BASIC26.19■■□□□ 1.78
TRIM43BA6NCK2 CD6-206ENST00000452451 1782 ntAPPRIS ALT2 TSL 1 (best) BASIC26.19■■□□□ 1.78
TRIM43BA6NCK2 FTCD-201ENST00000291670 1905 ntAPPRIS P1 TSL 1 (best) BASIC26.19■■□□□ 1.78
TRIM43BA6NCK2 AC009690.3-201ENST00000569547 1902 ntAPPRIS P1 TSL 2 BASIC26.19■■□□□ 1.78
TRIM43BA6NCK2 AC139426.1-201ENST00000568218 2529 ntBASIC26.19■■□□□ 1.78
TRIM43BA6NCK2 LZTS2-201ENST00000370220 5741 ntAPPRIS P1 TSL 1 (best) BASIC26.18■■□□□ 1.78
TRIM43BA6NCK2 AQP1-202ENST00000409611 1140 ntTSL 1 (best) BASIC26.18■■□□□ 1.78
TRIM43BA6NCK2 MCRIP1-202ENST00000457257 942 ntTSL 3 BASIC26.18■■□□□ 1.78
TRIM43BA6NCK2 AC092343.1-201ENST00000500224 729 ntTSL 3 BASIC26.18■■□□□ 1.78
TRIM43BA6NCK2 ATP10A-207ENST00000619904 988 ntTSL 5 BASIC26.18■■□□□ 1.78
TRIM43BA6NCK2 EXOC3-209ENST00000512944 2825 ntAPPRIS P1 TSL 1 (best) BASIC26.18■■□□□ 1.78
TRIM43BA6NCK2 TXNRD2-204ENST00000400521 2115 ntAPPRIS P2 TSL 1 (best) BASIC26.17■■□□□ 1.78
TRIM43BA6NCK2 FBXO33-202ENST00000554190 534 ntTSL 3 BASIC26.17■■□□□ 1.78
TRIM43BA6NCK2 DHRS11-215ENST00000618403 1598 ntAPPRIS P1 TSL 1 (best) BASIC26.16■■□□□ 1.78
TRIM43BA6NCK2 AF131216.4-201ENST00000638924 1588 ntBASIC26.16■■□□□ 1.78
TRIM43BA6NCK2 TFPT-201ENST00000391757 774 ntTSL 5 BASIC26.16■■□□□ 1.78
TRIM43BA6NCK2 TFPT-202ENST00000391758 804 ntAPPRIS ALT2 TSL 1 (best) BASIC26.16■■□□□ 1.78
TRIM43BA6NCK2 AL359317.1-201ENST00000556316 578 ntTSL 4 BASIC26.16■■□□□ 1.78
TRIM43BA6NCK2 NEDD4L-237ENST00000617539 728 ntTSL 2 BASIC26.16■■□□□ 1.78
TRIM43BA6NCK2 GPX4-213ENST00000622390 1002 ntTSL 5 BASIC26.16■■□□□ 1.78
TRIM43BA6NCK2 TOMM40-203ENST00000426677 1725 ntAPPRIS P2 TSL 1 (best) BASIC26.16■■□□□ 1.78
Retrieved 100 of 98,524 protein–RNA pairs in 95.5 ms