Protein–RNA interactions for Protein: Q8IWP9

CCDC28A, Coiled-coil domain-containing protein 28A, humanhuman

Predictions only

Length 274 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28AQ8IWP9 TSPAN4-209ENST00000409543 1031 ntAPPRIS P1 TSL 5 BASIC13.83□□□□□ -0.2
CCDC28AQ8IWP9 AC004951.3-201ENST00000418645 1148 ntBASIC13.83□□□□□ -0.2
CCDC28AQ8IWP9 SERTAD4-AS1-201ENST00000437764 726 ntTSL 1 (best) BASIC13.83□□□□□ -0.2
CCDC28AQ8IWP9 AL158047.1-201ENST00000445918 881 ntBASIC13.83□□□□□ -0.2
CCDC28AQ8IWP9 CERNA3-201ENST00000521403 557 ntTSL 3 BASIC13.83□□□□□ -0.2
CCDC28AQ8IWP9 TK2-204ENST00000525974 1178 ntTSL 2 BASIC13.83□□□□□ -0.2
CCDC28AQ8IWP9 AC015712.2-203ENST00000560461 688 ntTSL 3 BASIC13.83□□□□□ -0.2
CCDC28AQ8IWP9 MRPL4-204ENST00000588502 827 ntTSL 2 BASIC13.83□□□□□ -0.2
CCDC28AQ8IWP9 NTAN1-211ENST00000622833 1049 ntTSL 2 BASIC13.83□□□□□ -0.2
CCDC28AQ8IWP9 AC004816.2-201ENST00000622856 284 ntTSL 5 BASIC13.83□□□□□ -0.2
CCDC28AQ8IWP9 NTAN1-212ENST00000624579 1115 ntTSL 2 BASIC13.83□□□□□ -0.2
CCDC28AQ8IWP9 SQSTM1-216ENST00000626660 274 ntTSL 5 BASIC13.83□□□□□ -0.2
CCDC28AQ8IWP9 PIK3CG-201ENST00000359195 5377 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.2
CCDC28AQ8IWP9 FKBP8-201ENST00000222308 1710 ntAPPRIS ALT1 TSL 1 (best) BASIC13.83□□□□□ -0.2
CCDC28AQ8IWP9 RGS3-202ENST00000342620 1714 ntTSL 5 BASIC13.83□□□□□ -0.2
CCDC28AQ8IWP9 DAND5-202ENST00000585548 1731 ntTSL 1 (best) BASIC13.83□□□□□ -0.2
CCDC28AQ8IWP9 ZFAND6-222ENST00000613266 1729 ntAPPRIS P1 TSL 3 BASIC13.83□□□□□ -0.2
CCDC28AQ8IWP9 TBC1D1-219ENST00000615497 2383 ntTSL 2 BASIC13.83□□□□□ -0.2
CCDC28AQ8IWP9 VPS26B-201ENST00000281187 3691 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.2
CCDC28AQ8IWP9 CD99L2-205ENST00000437787 3493 ntTSL 2 BASIC13.83□□□□□ -0.2
CCDC28AQ8IWP9 AC002310.5-201ENST00000569360 1515 ntAPPRIS P1 TSL 2 BASIC13.83□□□□□ -0.2
CCDC28AQ8IWP9 POC1A-203ENST00000474012 1760 ntAPPRIS ALT2 TSL 2 BASIC13.83□□□□□ -0.2
CCDC28AQ8IWP9 THEMIS2-202ENST00000373921 2687 ntAPPRIS P1 TSL 5 BASIC13.83□□□□□ -0.2
CCDC28AQ8IWP9 SNAI2-201ENST00000020945 2010 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.2
CCDC28AQ8IWP9 TUBB2B-201ENST00000259818 2020 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.2
CCDC28AQ8IWP9 RER1-207ENST00000488353 2469 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.2
CCDC28AQ8IWP9 NEDD4L-205ENST00000400345 3647 ntAPPRIS P4 TSL 1 (best) BASIC13.83□□□□□ -0.2
CCDC28AQ8IWP9 FRMD3-201ENST00000304195 5297 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.2
CCDC28AQ8IWP9 MYLK3-201ENST00000394809 6911 ntAPPRIS P3 TSL 1 (best) BASIC13.83□□□□□ -0.2
CCDC28AQ8IWP9 DMAC1-201ENST00000358227 2755 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.2
CCDC28AQ8IWP9 PLEKHO2-201ENST00000323544 3720 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
CCDC28AQ8IWP9 SLC6A6P1-201ENST00000413933 1850 ntBASIC13.82□□□□□ -0.2
CCDC28AQ8IWP9 NCKAP5L-201ENST00000335999 4900 ntAPPRIS P1 TSL 5 BASIC13.82□□□□□ -0.2
CCDC28AQ8IWP9 RAB43-202ENST00000393304 4230 ntAPPRIS P1 TSL 4 BASIC13.82□□□□□ -0.2
CCDC28AQ8IWP9 PTGER3-209ENST00000460330 1447 ntAPPRIS ALT2 TSL 1 (best) BASIC13.82□□□□□ -0.2
CCDC28AQ8IWP9 RALGDS-201ENST00000372047 3598 ntAPPRIS ALT2 TSL 1 (best) BASIC13.82□□□□□ -0.2
CCDC28AQ8IWP9 MKNK1-203ENST00000371945 2618 ntAPPRIS ALT2 TSL 1 (best) BASIC13.82□□□□□ -0.2
CCDC28AQ8IWP9 PRMT1-217ENST00000532489 1686 ntTSL 5 BASIC13.82□□□□□ -0.2
CCDC28AQ8IWP9 MBLAC2-202ENST00000514906 1936 ntBASIC13.82□□□□□ -0.2
CCDC28AQ8IWP9 KCNJ18-201ENST00000567955 2196 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
CCDC28AQ8IWP9 NADSYN1-216ENST00000530055 2416 ntTSL 2 BASIC13.82□□□□□ -0.2
CCDC28AQ8IWP9 NFATC4-219ENST00000555167 4364 ntTSL 1 (best) BASIC13.82□□□□□ -0.2
CCDC28AQ8IWP9 PROM2-203ENST00000403131 2922 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
CCDC28AQ8IWP9 MLLT6-211ENST00000621332 7578 ntAPPRIS P2 TSL 1 (best) BASIC13.82□□□□□ -0.2
CCDC28AQ8IWP9 MRGPRF-AS1-201ENST00000538407 1490 ntTSL 1 (best) BASIC13.82□□□□□ -0.2
CCDC28AQ8IWP9 PCED1A-201ENST00000356872 1706 ntTSL 2 BASIC13.82□□□□□ -0.2
CCDC28AQ8IWP9 UCKL1-203ENST00000369908 1954 ntAPPRIS P1 TSL 2 BASIC13.82□□□□□ -0.2
CCDC28AQ8IWP9 ME2P1-201ENST00000426028 1970 ntBASIC13.82□□□□□ -0.2
CCDC28AQ8IWP9 TMEM216-203ENST00000515837 1958 ntAPPRIS P2 TSL 2 BASIC13.82□□□□□ -0.2
CCDC28AQ8IWP9 MANSC1-201ENST00000396349 2220 ntTSL 2 BASIC13.82□□□□□ -0.2
CCDC28AQ8IWP9 SGK3-206ENST00000520976 2483 ntTSL 2 BASIC13.82□□□□□ -0.2
CCDC28AQ8IWP9 SMTN-223ENST00000619644 3227 ntTSL 2 BASIC13.82□□□□□ -0.2
CCDC28AQ8IWP9 SEMA4B-201ENST00000332496 3781 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
CCDC28AQ8IWP9 FKBP5-201ENST00000357266 3772 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
CCDC28AQ8IWP9 ARHGAP11B-210ENST00000622744 2042 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
CCDC28AQ8IWP9 PDIA5-201ENST00000316218 1799 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
CCDC28AQ8IWP9 PTPRU-205ENST00000460170 5337 ntTSL 1 (best) BASIC13.82□□□□□ -0.2
CCDC28AQ8IWP9 TMEM223-201ENST00000307366 1288 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
CCDC28AQ8IWP9 PDZRN3-202ENST00000308537 1136 ntTSL 1 (best) BASIC13.82□□□□□ -0.2
CCDC28AQ8IWP9 NRIP3-201ENST00000309166 3809 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
CCDC28AQ8IWP9 PTPRCAP-201ENST00000326294 1292 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
CCDC28AQ8IWP9 AVP-201ENST00000380293 619 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
CCDC28AQ8IWP9 KIRREL3-AS3-201ENST00000404882 831 ntBASIC13.82□□□□□ -0.2
CCDC28AQ8IWP9 AL023284.2-201ENST00000405850 579 ntBASIC13.82□□□□□ -0.2
CCDC28AQ8IWP9 PPP1R14BP5-201ENST00000440334 435 ntBASIC13.82□□□□□ -0.2
CCDC28AQ8IWP9 FAM131A-208ENST00000453072 1038 ntTSL 2 BASIC13.82□□□□□ -0.2
CCDC28AQ8IWP9 RPS2P4-201ENST00000476944 856 ntBASIC13.82□□□□□ -0.2
CCDC28AQ8IWP9 KDM2B-217ENST00000543852 1188 ntTSL 5 BASIC13.82□□□□□ -0.2
CCDC28AQ8IWP9 ISG20-210ENST00000560741 800 ntAPPRIS P1 TSL 5 BASIC13.82□□□□□ -0.2
CCDC28AQ8IWP9 AC026271.3-201ENST00000571884 352 ntBASIC13.82□□□□□ -0.2
CCDC28AQ8IWP9 AC004771.5-201ENST00000575985 542 ntTSL 4 BASIC13.82□□□□□ -0.2
CCDC28AQ8IWP9 AF186192.3-201ENST00000583427 947 ntBASIC13.82□□□□□ -0.2
CCDC28AQ8IWP9 TARDBP-228ENST00000629725 1031 ntTSL 5 BASIC13.82□□□□□ -0.2
CCDC28AQ8IWP9 DUSP22-202ENST00000419235 3098 ntAPPRIS P1 TSL 2 BASIC13.82□□□□□ -0.2
CCDC28AQ8IWP9 CCNJ-201ENST00000265992 4115 ntTSL 1 (best) BASIC13.82□□□□□ -0.2
CCDC28AQ8IWP9 VWCE-202ENST00000335613 3640 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
CCDC28AQ8IWP9 LTK-204ENST00000561619 1821 ntAPPRIS ALT2 TSL 1 (best) BASIC13.82□□□□□ -0.2
CCDC28AQ8IWP9 JARID2-201ENST00000341776 5755 ntAPPRIS P3 TSL 1 (best) BASIC13.82□□□□□ -0.2
CCDC28AQ8IWP9 PRNP-201ENST00000379440 2657 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
CCDC28AQ8IWP9 WNT9B-202ENST00000393461 2654 ntTSL 2 BASIC13.82□□□□□ -0.2
CCDC28AQ8IWP9 H2BFM-201ENST00000355016 1882 ntAPPRIS P1 TSL 2 BASIC13.82□□□□□ -0.2
CCDC28AQ8IWP9 SYT1-201ENST00000261205 4808 ntAPPRIS P3 TSL 1 (best) BASIC13.82□□□□□ -0.2
CCDC28AQ8IWP9 C1QTNF2-201ENST00000393975 2414 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
CCDC28AQ8IWP9 EGR2-201ENST00000242480 2968 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
CCDC28AQ8IWP9 SMN2-202ENST00000380742 1388 ntAPPRIS ALT2 TSL 5 BASIC13.82□□□□□ -0.2
CCDC28AQ8IWP9 AL390038.1-201ENST00000419814 2481 ntTSL 1 (best) BASIC13.82□□□□□ -0.2
CCDC28AQ8IWP9 AL359258.1-201ENST00000438965 2481 ntTSL 1 (best) BASIC13.82□□□□□ -0.2
CCDC28AQ8IWP9 CFAP74-209ENST00000493964 5247 ntAPPRIS P5 TSL 5 BASIC13.82□□□□□ -0.2
CCDC28AQ8IWP9 REXO1L11P-201ENST00000620964 1927 ntBASIC13.82□□□□□ -0.2
CCDC28AQ8IWP9 CC2D1B-201ENST00000284376 3377 ntAPPRIS ALT2 TSL 5 BASIC13.82□□□□□ -0.2
CCDC28AQ8IWP9 XRCC3-211ENST00000555055 2584 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
CCDC28AQ8IWP9 RTL8B-201ENST00000391440 2026 ntAPPRIS P1 BASIC13.81□□□□□ -0.2
CCDC28AQ8IWP9 ZBTB37-203ENST00000367704 2323 ntTSL 2 BASIC13.81□□□□□ -0.2
CCDC28AQ8IWP9 CFLAR-206ENST00000395148 4415 ntTSL 1 (best) BASIC13.81□□□□□ -0.2
CCDC28AQ8IWP9 GDA-201ENST00000238018 2074 ntTSL 1 (best) BASIC13.81□□□□□ -0.2
CCDC28AQ8IWP9 TMEM189-202ENST00000371652 7714 ntAPPRIS P3 TSL 1 (best) BASIC13.81□□□□□ -0.2
CCDC28AQ8IWP9 MAGIX-208ENST00000616266 3295 ntAPPRIS ALT2 TSL 5 BASIC13.81□□□□□ -0.2
CCDC28AQ8IWP9 ABCA2-203ENST00000371605 8151 ntAPPRIS ALT2 TSL 2 BASIC13.81□□□□□ -0.2
CCDC28AQ8IWP9 SLC22A1-201ENST00000324965 1521 ntTSL 5 BASIC13.81□□□□□ -0.2
CCDC28AQ8IWP9 PSMD8-210ENST00000620216 1538 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
Retrieved 100 of 98,524 protein–RNA pairs in 55.3 ms