Protein–RNA interactions for Protein: Q6DD88

ATL3, Atlastin-3, humanhuman

Predictions only

Length 541 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ATL3Q6DD88 LOXL3-203ENST00000409249 2431 ntTSL 5 BASIC18.78■□□□□ 0.6
ATL3Q6DD88 HPSE-207ENST00000513463 1458 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
ATL3Q6DD88 ACTL8-201ENST00000375406 1861 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
ATL3Q6DD88 PLA2G2D-202ENST00000617227 1856 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
ATL3Q6DD88 SIGLEC10-201ENST00000339313 2256 ntAPPRIS P3 TSL 1 (best) BASIC18.77■□□□□ 0.6
ATL3Q6DD88 TSPEAR-202ENST00000397916 2114 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
ATL3Q6DD88 FAM104A-201ENST00000403627 2798 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
ATL3Q6DD88 TMPRSS13-203ENST00000524993 1950 ntAPPRIS P3 TSL 1 (best) BASIC18.77■□□□□ 0.6
ATL3Q6DD88 KIFC3-206ENST00000541240 3047 ntTSL 2 BASIC18.77■□□□□ 0.6
ATL3Q6DD88 PHYHD1-201ENST00000308941 1599 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
ATL3Q6DD88 AP000253.1-201ENST00000449339 2233 ntTSL 3 BASIC18.77■□□□□ 0.6
ATL3Q6DD88 SNX9-201ENST00000392185 4198 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
ATL3Q6DD88 ALOX15B-205ENST00000573359 1809 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
ATL3Q6DD88 CCHCR1-202ENST00000396263 2490 ntTSL 5 BASIC18.77■□□□□ 0.6
ATL3Q6DD88 RSPO1-203ENST00000612451 2463 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
ATL3Q6DD88 AL035685.1-202ENST00000637341 1688 ntTSL 5 BASIC18.77■□□□□ 0.6
ATL3Q6DD88 SMIM29-201ENST00000335352 1160 ntTSL 2 BASIC18.77■□□□□ 0.6
ATL3Q6DD88 GUK1-203ENST00000366718 1275 ntAPPRIS P3 TSL 3 BASIC18.77■□□□□ 0.6
ATL3Q6DD88 MRPL9-202ENST00000368830 1296 ntAPPRIS P3 TSL 1 (best) BASIC18.77■□□□□ 0.6
ATL3Q6DD88 OLFM1-207ENST00000371801 568 ntTSL 2 BASIC18.77■□□□□ 0.6
ATL3Q6DD88 AL354836.1-201ENST00000414042 681 ntTSL 2 BASIC18.77■□□□□ 0.6
ATL3Q6DD88 TREML1-203ENST00000437044 647 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
ATL3Q6DD88 TM4SF19-204ENST00000454715 1061 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
ATL3Q6DD88 SLC30A5-203ENST00000502979 681 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
ATL3Q6DD88 AC019257.1-202ENST00000521498 445 ntTSL 5 BASIC18.77■□□□□ 0.6
ATL3Q6DD88 AC008878.2-201ENST00000601870 942 ntAPPRIS P1 TSL 4 BASIC18.77■□□□□ 0.6
ATL3Q6DD88 AC104581.1-203ENST00000640240 353 ntTSL 2 BASIC18.77■□□□□ 0.6
ATL3Q6DD88 DPF3-204ENST00000546183 1514 ntTSL 2 BASIC18.77■□□□□ 0.6
ATL3Q6DD88 EPHA10-203ENST00000427468 3167 ntAPPRIS ALT2 TSL 5 BASIC18.77■□□□□ 0.6
ATL3Q6DD88 ARFGAP1-210ENST00000519273 3176 ntTSL 2 BASIC18.77■□□□□ 0.6
ATL3Q6DD88 SCAF8-201ENST00000367178 5057 ntAPPRIS P1 TSL 2 BASIC18.77■□□□□ 0.6
ATL3Q6DD88 MEGF6-201ENST00000294599 4501 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
ATL3Q6DD88 HSPB7-204ENST00000411503 2128 ntAPPRIS ALT1 TSL 1 (best) BASIC18.77■□□□□ 0.6
ATL3Q6DD88 LONRF3-201ENST00000304778 2989 ntTSL 1 (best) BASIC18.77■□□□□ 0.59
ATL3Q6DD88 NDUFA6-AS1-203ENST00000439129 2950 ntTSL 5 BASIC18.77■□□□□ 0.59
ATL3Q6DD88 TMED9-201ENST00000332598 1473 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.59
ATL3Q6DD88 BRSK1-202ENST00000326848 2095 ntTSL 5 BASIC18.77■□□□□ 0.59
ATL3Q6DD88 FMNL3-202ENST00000352151 4006 ntAPPRIS P3 TSL 2 BASIC18.77■□□□□ 0.59
ATL3Q6DD88 CHCHD3-201ENST00000262570 1598 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
ATL3Q6DD88 CCNA2-202ENST00000618014 2797 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
ATL3Q6DD88 FAM76B-201ENST00000358780 3952 ntAPPRIS P3 TSL 1 (best) BASIC18.76■□□□□ 0.59
ATL3Q6DD88 TSPAN4-208ENST00000409531 1339 ntTSL 5 BASIC18.76■□□□□ 0.59
ATL3Q6DD88 QRFP-202ENST00000623824 1658 ntAPPRIS P1 TSL 3 BASIC18.76■□□□□ 0.59
ATL3Q6DD88 TIGD2-202ENST00000603357 3217 ntAPPRIS P1 TSL 4 BASIC18.76■□□□□ 0.59
ATL3Q6DD88 EIF4G1-204ENST00000352767 5484 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
ATL3Q6DD88 PRICKLE1-211ENST00000639566 3341 ntAPPRIS P1 TSL 5 BASIC18.76■□□□□ 0.59
ATL3Q6DD88 KDM5C-204ENST00000375401 6031 ntAPPRIS P3 TSL 1 (best) BASIC18.76■□□□□ 0.59
ATL3Q6DD88 IKBIP-201ENST00000299157 3189 ntAPPRIS P4 TSL 1 (best) BASIC18.76■□□□□ 0.59
ATL3Q6DD88 CLEC18A-203ENST00000449317 1875 ntAPPRIS ALT2 TSL 5 BASIC18.76■□□□□ 0.59
ATL3Q6DD88 SPDEF-202ENST00000544425 1866 ntAPPRIS ALT1 TSL 2 BASIC18.76■□□□□ 0.59
ATL3Q6DD88 RELA-227ENST00000615805 2236 ntTSL 5 BASIC18.76■□□□□ 0.59
ATL3Q6DD88 ANAPC11-201ENST00000344877 918 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
ATL3Q6DD88 MSANTD3-201ENST00000374885 786 ntTSL 2 BASIC18.76■□□□□ 0.59
ATL3Q6DD88 MEF2B-202ENST00000409447 1297 ntTSL 3 BASIC18.76■□□□□ 0.59
ATL3Q6DD88 FIS1-203ENST00000442303 631 ntTSL 3 BASIC18.76■□□□□ 0.59
ATL3Q6DD88 VN2R19P-201ENST00000442399 1052 ntBASIC18.76■□□□□ 0.59
ATL3Q6DD88 AL133343.2-201ENST00000457213 370 ntTSL 3 BASIC18.76■□□□□ 0.59
ATL3Q6DD88 PPIE-208ENST00000470213 927 ntTSL 3 BASIC18.76■□□□□ 0.59
ATL3Q6DD88 AC108751.1-201ENST00000490852 363 ntBASIC18.76■□□□□ 0.59
ATL3Q6DD88 POLD4-207ENST00000531239 584 ntTSL 2 BASIC18.76■□□□□ 0.59
ATL3Q6DD88 AP002469.2-201ENST00000531724 424 ntBASIC18.76■□□□□ 0.59
ATL3Q6DD88 GPHA2-202ENST00000532246 466 ntTSL 3 BASIC18.76■□□□□ 0.59
ATL3Q6DD88 RPL28-209ENST00000560055 670 ntTSL 3 BASIC18.76■□□□□ 0.59
ATL3Q6DD88 FLYWCH2-203ENST00000572006 754 ntAPPRIS ALT2 TSL 2 BASIC18.76■□□□□ 0.59
ATL3Q6DD88 ANAPC11-213ENST00000577747 672 ntAPPRIS P1 TSL 5 BASIC18.76■□□□□ 0.59
ATL3Q6DD88 AL365330.1-201ENST00000607459 531 ntBASIC18.76■□□□□ 0.59
ATL3Q6DD88 CDC42EP4-209ENST00000630622 240 ntTSL 5 BASIC18.76■□□□□ 0.59
ATL3Q6DD88 PIPOX-201ENST00000323372 2414 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
ATL3Q6DD88 CLDN6-201ENST00000328796 1369 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
ATL3Q6DD88 VGLL4-211ENST00000430365 1377 ntAPPRIS P1 TSL 2 BASIC18.76■□□□□ 0.59
ATL3Q6DD88 HFE2-204ENST00000475797 1381 ntTSL 2 BASIC18.76■□□□□ 0.59
ATL3Q6DD88 COL26A1-203ENST00000613501 2970 ntAPPRIS ALT2 TSL 1 (best) BASIC18.76■□□□□ 0.59
ATL3Q6DD88 GALNT10-203ENST00000425427 4344 ntTSL 2 BASIC18.76■□□□□ 0.59
ATL3Q6DD88 TCF25-202ENST00000263347 2377 ntTSL 5 BASIC18.76■□□□□ 0.59
ATL3Q6DD88 RDH10-201ENST00000240285 3949 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
ATL3Q6DD88 ZNF514-201ENST00000295208 3011 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
ATL3Q6DD88 NPRL3-211ENST00000611875 2881 ntAPPRIS P1 TSL 5 BASIC18.75■□□□□ 0.59
ATL3Q6DD88 KNOP1-205ENST00000568230 1311 ntAPPRIS ALT2 TSL 5 BASIC18.75■□□□□ 0.59
ATL3Q6DD88 KCTD20-202ENST00000373731 5619 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
ATL3Q6DD88 RTEL1-TNFRSF6B-202ENST00000482936 4931 ntAPPRIS P5 TSL 2 BASIC18.75■□□□□ 0.59
ATL3Q6DD88 SNAPC4-201ENST00000298532 5010 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
ATL3Q6DD88 WDR45-234ENST00000634838 1545 ntTSL 5 BASIC18.75■□□□□ 0.59
ATL3Q6DD88 NELFA-203ENST00000411638 2199 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
ATL3Q6DD88 UCHL5-206ENST00000367455 5327 ntAPPRIS P3 TSL 1 (best) BASIC18.75■□□□□ 0.59
ATL3Q6DD88 PDE9A-205ENST00000349112 1616 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
ATL3Q6DD88 MSI2-204ENST00000442934 1624 ntTSL 2 BASIC18.75■□□□□ 0.59
ATL3Q6DD88 ALDOA-201ENST00000338110 2384 ntAPPRIS P2 TSL 1 (best) BASIC18.75■□□□□ 0.59
ATL3Q6DD88 NEO1-206ENST00000558964 4441 ntAPPRIS ALT2 TSL 1 (best) BASIC18.75■□□□□ 0.59
ATL3Q6DD88 SLC22A5-203ENST00000435065 1746 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
ATL3Q6DD88 ACE-204ENST00000428043 5120 ntTSL 2 BASIC18.75■□□□□ 0.59
ATL3Q6DD88 PLGRKT-201ENST00000223864 932 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
ATL3Q6DD88 TM2D1-201ENST00000294613 1250 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
ATL3Q6DD88 IFT27-201ENST00000340630 1113 ntAPPRIS P3 TSL 1 (best) BASIC18.75■□□□□ 0.59
ATL3Q6DD88 MAL-203ENST00000353004 873 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
ATL3Q6DD88 TM2D1-204ENST00000371180 1248 ntTSL 5 BASIC18.75■□□□□ 0.59
ATL3Q6DD88 CHCHD1-201ENST00000372833 835 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
ATL3Q6DD88 IMMP2L-207ENST00000452895 833 ntAPPRIS P1 TSL 5 BASIC18.75■□□□□ 0.59
ATL3Q6DD88 REEP2-206ENST00000506158 1021 ntTSL 2 BASIC18.75■□□□□ 0.59
ATL3Q6DD88 CYB561D1-208ENST00000528785 1271 ntAPPRIS ALT1 TSL 5 BASIC18.75■□□□□ 0.59
ATL3Q6DD88 THTPA-204ENST00000554970 569 ntTSL 4 BASIC18.75■□□□□ 0.59
Retrieved 100 of 98,524 protein–RNA pairs in 62.7 ms