Protein–RNA interactions for Protein: Q9NRR8

CDC42SE1, CDC42 small effector protein 1, humanhuman

Predictions only

Length 79 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDC42SE1Q9NRR8 SRRM4-201ENST00000267260 8477 ntAPPRIS P1 TSL 1 (best) BASIC8.35□□□□□ -1.07
CDC42SE1Q9NRR8 EPB41L5-205ENST00000452780 6410 ntTSL 5 BASIC8.35□□□□□ -1.07
CDC42SE1Q9NRR8 NDRG2-226ENST00000554104 2146 ntTSL 1 (best) BASIC8.35□□□□□ -1.07
CDC42SE1Q9NRR8 ORMDL3-204ENST00000579695 2106 ntAPPRIS P1 TSL 1 (best) BASIC8.35□□□□□ -1.07
CDC42SE1Q9NRR8 CENPP-203ENST00000375587 8766 ntAPPRIS P1 TSL 1 (best) BASIC8.35□□□□□ -1.07
CDC42SE1Q9NRR8 SEC23A-201ENST00000307712 4135 ntAPPRIS P1 TSL 1 (best) BASIC8.35□□□□□ -1.07
CDC42SE1Q9NRR8 CCDC57-202ENST00000389641 3000 ntAPPRIS ALT2 TSL 5 BASIC8.35□□□□□ -1.07
CDC42SE1Q9NRR8 CCDC57-206ENST00000392347 3000 ntAPPRIS ALT2 TSL 1 (best) BASIC8.35□□□□□ -1.07
CDC42SE1Q9NRR8 DEXI-202ENST00000469379 1393 ntAPPRIS P1 TSL 2 BASIC8.35□□□□□ -1.07
CDC42SE1Q9NRR8 ALDH4A1-205ENST00000538309 1940 ntTSL 2 BASIC8.35□□□□□ -1.07
CDC42SE1Q9NRR8 LHX6-210ENST00000559895 3587 ntTSL 2 BASIC8.35□□□□□ -1.07
CDC42SE1Q9NRR8 GNG4-202ENST00000366598 1721 ntAPPRIS P1 TSL 1 (best) BASIC8.34□□□□□ -1.07
CDC42SE1Q9NRR8 SPDYE5-203ENST00000625065 1700 ntAPPRIS P2 TSL 5 BASIC8.34□□□□□ -1.07
CDC42SE1Q9NRR8 LINC01341-202ENST00000421003 2600 ntTSL 2 BASIC8.34□□□□□ -1.07
CDC42SE1Q9NRR8 ZNF148-206ENST00000485866 2960 ntAPPRIS P1 TSL 1 (best) BASIC8.34□□□□□ -1.07
CDC42SE1Q9NRR8 TMEM201-201ENST00000340305 3851 ntTSL 1 (best) BASIC8.34□□□□□ -1.07
CDC42SE1Q9NRR8 PPM1M-201ENST00000296487 2429 ntTSL 2 BASIC8.34□□□□□ -1.07
CDC42SE1Q9NRR8 GNAI2-203ENST00000422163 2407 ntTSL 2 BASIC8.34□□□□□ -1.07
CDC42SE1Q9NRR8 USP3-204ENST00000540797 5474 ntTSL 2 BASIC8.34□□□□□ -1.07
CDC42SE1Q9NRR8 PRKN-202ENST00000366892 1505 ntTSL 5 BASIC8.34□□□□□ -1.07
CDC42SE1Q9NRR8 ALKBH6-213ENST00000486389 1525 ntTSL 3 BASIC8.34□□□□□ -1.07
CDC42SE1Q9NRR8 AGAP2-AS1-201ENST00000542466 1500 ntTSL 1 (best) BASIC8.34□□□□□ -1.07
CDC42SE1Q9NRR8 AC002310.5-201ENST00000569360 1515 ntAPPRIS P1 TSL 2 BASIC8.34□□□□□ -1.07
CDC42SE1Q9NRR8 AL391256.1-201ENST00000443260 1855 ntBASIC8.34□□□□□ -1.07
CDC42SE1Q9NRR8 RASSF3-204ENST00000542104 3492 ntTSL 1 (best) BASIC8.34□□□□□ -1.07
CDC42SE1Q9NRR8 HTR3A-203ENST00000375498 2235 ntTSL 1 (best) BASIC8.34□□□□□ -1.07
CDC42SE1Q9NRR8 SLC32A1-201ENST00000217420 2574 ntAPPRIS P1 TSL 1 (best) BASIC8.34□□□□□ -1.07
CDC42SE1Q9NRR8 SNCAIP-203ENST00000379538 2588 ntTSL 1 (best) BASIC8.34□□□□□ -1.07
CDC42SE1Q9NRR8 SAMD4B-201ENST00000314471 4519 ntAPPRIS P3 TSL 1 (best) BASIC8.34□□□□□ -1.07
CDC42SE1Q9NRR8 GPR108-202ENST00000430424 2009 ntAPPRIS ALT2 TSL 5 BASIC8.34□□□□□ -1.07
CDC42SE1Q9NRR8 SPATA2-202ENST00000422556 4138 ntAPPRIS P1 TSL 2 BASIC8.34□□□□□ -1.07
CDC42SE1Q9NRR8 SLC4A2-201ENST00000392826 3947 ntAPPRIS ALT2 TSL 2 BASIC8.34□□□□□ -1.07
CDC42SE1Q9NRR8 AC105345.1-202ENST00000382488 3204 ntTSL 2 BASIC8.34□□□□□ -1.07
CDC42SE1Q9NRR8 GPR68-204ENST00000535815 2859 ntAPPRIS P2 TSL 1 (best) BASIC8.34□□□□□ -1.07
CDC42SE1Q9NRR8 PDXDC1-204ENST00000455313 2183 ntTSL 2 BASIC8.34□□□□□ -1.07
CDC42SE1Q9NRR8 CHTOP-207ENST00000614256 1840 ntTSL 3 BASIC8.34□□□□□ -1.07
CDC42SE1Q9NRR8 CLEC16A-202ENST00000409552 3365 ntTSL 1 (best) BASIC8.34□□□□□ -1.07
CDC42SE1Q9NRR8 SAFB-211ENST00000592224 3014 ntAPPRIS ALT2 TSL 1 (best) BASIC8.34□□□□□ -1.07
CDC42SE1Q9NRR8 MTHFR-205ENST00000376592 8378 ntAPPRIS P3 TSL 1 (best) BASIC8.34□□□□□ -1.07
CDC42SE1Q9NRR8 AGTPBP1-208ENST00000628899 4222 ntTSL 2 BASIC8.34□□□□□ -1.07
CDC42SE1Q9NRR8 FECH-201ENST00000262093 3853 ntAPPRIS P3 TSL 1 (best) BASIC8.34□□□□□ -1.07
CDC42SE1Q9NRR8 DNAJB8-201ENST00000319153 2465 ntAPPRIS P1 TSL 1 (best) BASIC8.34□□□□□ -1.07
CDC42SE1Q9NRR8 AIFM1-209ENST00000535724 2468 ntTSL 1 (best) BASIC8.34□□□□□ -1.07
CDC42SE1Q9NRR8 HDLBP-214ENST00000427183 6238 ntTSL 2 BASIC8.34□□□□□ -1.07
CDC42SE1Q9NRR8 ADCYAP1-203ENST00000579794 3346 ntAPPRIS P1 TSL 1 (best) BASIC8.34□□□□□ -1.07
CDC42SE1Q9NRR8 C2orf82-201ENST00000331342 465 ntAPPRIS P2 TSL 1 (best) BASIC8.34□□□□□ -1.07
CDC42SE1Q9NRR8 VAC14-AS1-201ENST00000398177 2145 ntTSL 2 BASIC8.34□□□□□ -1.07
CDC42SE1Q9NRR8 AL596442.1-201ENST00000429305 429 ntTSL 2 BASIC8.34□□□□□ -1.07
CDC42SE1Q9NRR8 AC025674.2-201ENST00000522622 2971 ntTSL 1 (best) BASIC8.34□□□□□ -1.07
CDC42SE1Q9NRR8 AC124947.2-201ENST00000547118 1133 ntBASIC8.34□□□□□ -1.07
CDC42SE1Q9NRR8 UBE2F-223ENST00000612130 2135 ntAPPRIS P1 TSL 5 BASIC8.34□□□□□ -1.07
CDC42SE1Q9NRR8 LYNX1-208ENST00000615007 1293 ntAPPRIS P1 TSL 1 (best) BASIC8.34□□□□□ -1.07
CDC42SE1Q9NRR8 KLF7-204ENST00000423015 1788 ntTSL 1 (best) BASIC8.34□□□□□ -1.07
CDC42SE1Q9NRR8 C6orf89-203ENST00000373685 1400 ntAPPRIS ALT2 TSL 5 BASIC8.34□□□□□ -1.07
CDC42SE1Q9NRR8 ECHDC2-221ENST00000536120 1446 ntTSL 3 BASIC8.34□□□□□ -1.07
CDC42SE1Q9NRR8 DNM3-202ENST00000367731 7613 ntAPPRIS P3 TSL 1 (best) BASIC8.34□□□□□ -1.07
CDC42SE1Q9NRR8 RBP1-203ENST00000483943 1935 ntTSL 2 BASIC8.34□□□□□ -1.07
CDC42SE1Q9NRR8 SLC35C2-201ENST00000243896 2447 ntAPPRIS P1 TSL 1 (best) BASIC8.34□□□□□ -1.07
CDC42SE1Q9NRR8 ALDOA-228ENST00000627059 2402 ntAPPRIS ALT1 TSL 5 BASIC8.34□□□□□ -1.07
CDC42SE1Q9NRR8 MDM1-201ENST00000303145 2918 ntAPPRIS P3 TSL 1 (best) BASIC8.34□□□□□ -1.07
CDC42SE1Q9NRR8 SEC24B-201ENST00000265175 5083 ntAPPRIS ALT2 TSL 1 (best) BASIC8.34□□□□□ -1.07
CDC42SE1Q9NRR8 SLCO2B1-217ENST00000532236 2593 ntAPPRIS ALT2 TSL 2 BASIC8.34□□□□□ -1.07
CDC42SE1Q9NRR8 LGMN-201ENST00000334869 2055 ntAPPRIS P1 TSL 1 (best) BASIC8.34□□□□□ -1.07
CDC42SE1Q9NRR8 RAB34-201ENST00000301043 1592 ntAPPRIS P1 TSL 1 (best) BASIC8.34□□□□□ -1.07
CDC42SE1Q9NRR8 SGCE-207ENST00000447873 1597 ntTSL 1 (best) BASIC8.34□□□□□ -1.07
CDC42SE1Q9NRR8 MLXIPL-203ENST00000354613 3215 ntTSL 1 (best) BASIC8.34□□□□□ -1.07
CDC42SE1Q9NRR8 MSH5-201ENST00000375703 2708 ntAPPRIS ALT2 TSL 1 (best) BASIC8.34□□□□□ -1.07
CDC42SE1Q9NRR8 AL356258.1-201ENST00000605929 2246 ntTSL 2 BASIC8.34□□□□□ -1.07
CDC42SE1Q9NRR8 B3GNT5-202ENST00000460419 3368 ntAPPRIS P1 TSL 2 BASIC8.34□□□□□ -1.07
CDC42SE1Q9NRR8 ASAP3-202ENST00000437606 2865 ntAPPRIS ALT2 TSL 2 BASIC8.34□□□□□ -1.07
CDC42SE1Q9NRR8 PEAR1-202ENST00000338302 4970 ntAPPRIS P1 TSL 5 BASIC8.34□□□□□ -1.07
CDC42SE1Q9NRR8 PPARG-202ENST00000309576 1870 ntAPPRIS ALT1 TSL 2 BASIC8.34□□□□□ -1.07
CDC42SE1Q9NRR8 WDFY2-203ENST00000612477 6932 ntTSL 2 BASIC8.34□□□□□ -1.07
CDC42SE1Q9NRR8 LIPE-201ENST00000244289 3813 ntAPPRIS P1 TSL 1 (best) BASIC8.34□□□□□ -1.07
CDC42SE1Q9NRR8 IKZF1-204ENST00000349824 5757 ntTSL 5 BASIC8.34□□□□□ -1.07
CDC42SE1Q9NRR8 PNPLA6-201ENST00000221249 4617 ntAPPRIS P1 TSL 1 (best) BASIC8.34□□□□□ -1.07
CDC42SE1Q9NRR8 MSH5-202ENST00000375740 2669 ntTSL 1 (best) BASIC8.34□□□□□ -1.07
CDC42SE1Q9NRR8 KIF12-201ENST00000374118 2001 ntTSL 1 (best) BASIC8.34□□□□□ -1.07
CDC42SE1Q9NRR8 CSNK1G3-206ENST00000511130 1356 ntTSL 2 BASIC8.34□□□□□ -1.07
CDC42SE1Q9NRR8 ZBTB20-206ENST00000464560 2816 ntAPPRIS P1 TSL 1 (best) BASIC8.34□□□□□ -1.07
CDC42SE1Q9NRR8 MCF2L-204ENST00000375608 3648 ntTSL 5 BASIC8.34□□□□□ -1.08
CDC42SE1Q9NRR8 GRHL2-201ENST00000251808 5239 ntAPPRIS P1 TSL 1 (best) BASIC8.34□□□□□ -1.08
CDC42SE1Q9NRR8 STEAP1B-201ENST00000404369 1515 ntAPPRIS ALT2 TSL 1 (best) BASIC8.34□□□□□ -1.08
CDC42SE1Q9NRR8 SGK3-206ENST00000520976 2483 ntTSL 2 BASIC8.34□□□□□ -1.08
CDC42SE1Q9NRR8 KLK3-202ENST00000360617 1664 ntTSL 1 (best) BASIC8.34□□□□□ -1.08
CDC42SE1Q9NRR8 SSBP3-205ENST00000417664 1666 ntTSL 5 BASIC8.34□□□□□ -1.08
CDC42SE1Q9NRR8 SHISA5-219ENST00000612611 1677 ntTSL 5 BASIC8.34□□□□□ -1.08
CDC42SE1Q9NRR8 PCDHA11-202ENST00000616325 3418 ntAPPRIS ALT2 BASIC8.33□□□□□ -1.08
CDC42SE1Q9NRR8 AOC1-201ENST00000360937 2649 ntAPPRIS P1 TSL 1 (best) BASIC8.33□□□□□ -1.08
CDC42SE1Q9NRR8 TMEM117-207ENST00000551577 2643 ntTSL 1 (best) BASIC8.33□□□□□ -1.08
CDC42SE1Q9NRR8 DLGAP3-201ENST00000235180 3587 ntAPPRIS P1 TSL 2 BASIC8.33□□□□□ -1.08
CDC42SE1Q9NRR8 MST1R-201ENST00000296474 4536 ntAPPRIS P3 TSL 1 (best) BASIC8.33□□□□□ -1.08
CDC42SE1Q9NRR8 DGKA-202ENST00000394147 2770 ntAPPRIS P1 TSL 5 BASIC8.33□□□□□ -1.08
CDC42SE1Q9NRR8 FLOT2-201ENST00000394906 2756 ntTSL 5 BASIC8.33□□□□□ -1.08
CDC42SE1Q9NRR8 LINC02447-202ENST00000501888 2146 ntBASIC8.33□□□□□ -1.08
CDC42SE1Q9NRR8 ZNF71-201ENST00000328070 5428 ntAPPRIS P1 TSL 1 (best) BASIC8.33□□□□□ -1.08
CDC42SE1Q9NRR8 SBDS-201ENST00000246868 1631 ntAPPRIS P2 TSL 1 (best) BASIC8.33□□□□□ -1.08
CDC42SE1Q9NRR8 PEPD-203ENST00000436370 1638 ntTSL 2 BASIC8.33□□□□□ -1.08
CDC42SE1Q9NRR8 CHI3L1-201ENST00000255409 1792 ntAPPRIS P1 TSL 1 (best) BASIC8.33□□□□□ -1.08
CDC42SE1Q9NRR8 GFAP-203ENST00000435360 1779 ntTSL 2 BASIC8.33□□□□□ -1.08
Retrieved 100 of 98,524 protein–RNA pairs in 44.5 ms