Protein–RNA interactions for Protein: P62891

RPL39, 60S ribosomal protein L39, humanhuman

Known RBP Predictions only

Length 51 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RPL39P62891 WNT16-201ENST00000222462 3147 ntAPPRIS P1 TSL 1 (best) BASIC11.72□□□□□ -0.53
RPL39P62891 PTPN5-201ENST00000358540 3135 ntTSL 1 (best) BASIC11.72□□□□□ -0.53
RPL39P62891 C19orf48-201ENST00000345523 1503 ntAPPRIS P1 TSL 2 BASIC11.72□□□□□ -0.53
RPL39P62891 FOXB1-201ENST00000396057 2957 ntAPPRIS P1 TSL 1 (best) BASIC11.72□□□□□ -0.53
RPL39P62891 NRBP1-201ENST00000233557 2887 ntAPPRIS P1 TSL 2 BASIC11.72□□□□□ -0.53
RPL39P62891 ZNF563-201ENST00000293725 2754 ntAPPRIS P1 TSL 1 (best) BASIC11.72□□□□□ -0.53
RPL39P62891 ESYT3-201ENST00000289135 1356 ntTSL 5 BASIC11.72□□□□□ -0.53
RPL39P62891 FITM1-201ENST00000267426 1194 ntAPPRIS P1 TSL 1 (best) BASIC11.72□□□□□ -0.53
RPL39P62891 HES7-201ENST00000317814 678 ntAPPRIS P3 TSL 1 (best) BASIC11.72□□□□□ -0.53
RPL39P62891 CALML5-201ENST00000380332 859 ntAPPRIS P1 BASIC11.72□□□□□ -0.53
RPL39P62891 TSPY5P-201ENST00000426936 936 ntBASIC11.72□□□□□ -0.53
RPL39P62891 SIGLEC30P-201ENST00000455569 941 ntBASIC11.72□□□□□ -0.53
RPL39P62891 LINC00882-201ENST00000473636 710 ntTSL 3 BASIC11.72□□□□□ -0.53
RPL39P62891 BOC-211ENST00000484034 1286 ntTSL 1 (best) BASIC11.72□□□□□ -0.53
RPL39P62891 MOK-234ENST00000524370 1165 ntTSL 1 (best) BASIC11.72□□□□□ -0.53
RPL39P62891 TSFM-208ENST00000543727 651 ntTSL 1 (best) BASIC11.72□□□□□ -0.53
RPL39P62891 ANAPC11-204ENST00000571024 668 ntAPPRIS P1 TSL 1 (best) BASIC11.72□□□□□ -0.53
RPL39P62891 LINC00092-202ENST00000580908 580 ntTSL 2 BASIC11.72□□□□□ -0.53
RPL39P62891 ANAPC11-218ENST00000582222 523 ntTSL 2 BASIC11.72□□□□□ -0.53
RPL39P62891 FAM110C-201ENST00000327669 3760 ntAPPRIS P1 TSL 1 (best) BASIC11.72□□□□□ -0.53
RPL39P62891 JAKMIP1-204ENST00000409831 2371 ntAPPRIS P1 TSL 2 BASIC11.72□□□□□ -0.53
RPL39P62891 AJ239322.1-201ENST00000419362 2209 ntTSL 2 BASIC11.72□□□□□ -0.53
RPL39P62891 MCFD2-201ENST00000319466 4182 ntAPPRIS P1 TSL 1 (best) BASIC11.72□□□□□ -0.53
RPL39P62891 CASC3-201ENST00000264645 4116 ntAPPRIS P1 TSL 1 (best) BASIC11.72□□□□□ -0.53
RPL39P62891 VARS2-201ENST00000321897 4073 ntTSL 1 (best) BASIC11.72□□□□□ -0.53
RPL39P62891 ARHGEF7-204ENST00000375736 5032 ntAPPRIS P3 TSL 1 (best) BASIC11.72□□□□□ -0.53
RPL39P62891 CASR-202ENST00000498619 5009 ntTSL 1 (best) BASIC11.72□□□□□ -0.53
RPL39P62891 NUP88-207ENST00000573584 2916 ntAPPRIS P1 TSL 1 (best) BASIC11.72□□□□□ -0.53
RPL39P62891 IRGQ-201ENST00000422989 9685 ntAPPRIS P1 TSL 5 BASIC11.72□□□□□ -0.53
RPL39P62891 FOSL2-201ENST00000264716 6708 ntAPPRIS P1 TSL 1 (best) BASIC11.72□□□□□ -0.53
RPL39P62891 VWA2-202ENST00000392982 2794 ntAPPRIS P1 TSL 1 (best) BASIC11.72□□□□□ -0.53
RPL39P62891 ABLIM3-206ENST00000506113 4569 ntAPPRIS P1 TSL 1 (best) BASIC11.72□□□□□ -0.53
RPL39P62891 BCRP2-201ENST00000398241 1842 ntTSL 2 BASIC11.72□□□□□ -0.53
RPL39P62891 ILF3-210ENST00000588657 2697 ntAPPRIS ALT2 TSL 5 BASIC11.72□□□□□ -0.53
RPL39P62891 AL512652.2-201ENST00000625156 1716 ntBASIC11.72□□□□□ -0.53
RPL39P62891 BX276092.9-202ENST00000636096 1722 ntAPPRIS P5 TSL 5 BASIC11.72□□□□□ -0.53
RPL39P62891 STBD1-201ENST00000237642 3420 ntAPPRIS P1 TSL 1 (best) BASIC11.72□□□□□ -0.53
RPL39P62891 IMPDH1-202ENST00000348127 2479 ntTSL 1 (best) BASIC11.71□□□□□ -0.53
RPL39P62891 STRN3-201ENST00000355683 3970 ntTSL 1 (best) BASIC11.71□□□□□ -0.53
RPL39P62891 NFIC-210ENST00000590282 1558 ntTSL 2 BASIC11.71□□□□□ -0.53
RPL39P62891 SLC18A2-201ENST00000298472 3852 ntAPPRIS P1 TSL 1 (best) BASIC11.71□□□□□ -0.53
RPL39P62891 ACSS2-202ENST00000360596 3065 ntAPPRIS P1 TSL 1 (best) BASIC11.71□□□□□ -0.53
RPL39P62891 MC1R-202ENST00000555147 3099 ntAPPRIS P1 BASIC11.71□□□□□ -0.53
RPL39P62891 PARD3B-204ENST00000406610 8174 ntAPPRIS ALT2 TSL 1 (best) BASIC11.71□□□□□ -0.53
RPL39P62891 TMEM25-206ENST00000442938 2228 ntTSL 2 BASIC11.71□□□□□ -0.53
RPL39P62891 APOA4-201ENST00000357780 1473 ntAPPRIS P1 TSL 1 (best) BASIC11.71□□□□□ -0.53
RPL39P62891 STXBP5-207ENST00000546097 2160 ntTSL 1 (best) BASIC11.71□□□□□ -0.53
RPL39P62891 PRRT2-214ENST00000637064 2153 ntAPPRIS P1 TSL 5 BASIC11.71□□□□□ -0.53
RPL39P62891 DFFA-201ENST00000377036 1403 ntTSL 1 (best) BASIC11.71□□□□□ -0.53
RPL39P62891 CYP4B1-203ENST00000371923 2110 ntAPPRIS ALT1 TSL 1 (best) BASIC11.71□□□□□ -0.53
RPL39P62891 TNFRSF13B-201ENST00000261652 1357 ntAPPRIS P2 TSL 1 (best) BASIC11.71□□□□□ -0.53
RPL39P62891 BSCL2-201ENST00000278893 1364 ntAPPRIS ALT2 TSL 2 BASIC11.71□□□□□ -0.53
RPL39P62891 AC243591.1-201ENST00000452967 1364 ntBASIC11.71□□□□□ -0.53
RPL39P62891 PPP3CA-207ENST00000512215 4007 ntTSL 1 (best) BASIC11.71□□□□□ -0.53
RPL39P62891 MARK3-202ENST00000303622 3283 ntAPPRIS P3 TSL 1 (best) BASIC11.71□□□□□ -0.53
RPL39P62891 DMPK-202ENST00000343373 3227 ntTSL 1 (best) BASIC11.71□□□□□ -0.53
RPL39P62891 GPR89B-201ENST00000314163 1934 ntAPPRIS P1 TSL 1 (best) BASIC11.71□□□□□ -0.53
RPL39P62891 BOLA1-202ENST00000369152 859 ntAPPRIS P1 TSL 1 (best) BASIC11.71□□□□□ -0.53
RPL39P62891 DNPH1-202ENST00000393987 796 ntTSL 2 BASIC11.71□□□□□ -0.53
RPL39P62891 GGT1-205ENST00000403838 1033 ntTSL 1 (best) BASIC11.71□□□□□ -0.53
RPL39P62891 GGT1-207ENST00000404532 853 ntTSL 1 (best) BASIC11.71□□□□□ -0.53
RPL39P62891 AL391650.1-205ENST00000433939 579 ntAPPRIS P1 TSL 3 BASIC11.71□□□□□ -0.53
RPL39P62891 AC012618.3-202ENST00000440004 472 ntTSL 4 BASIC11.71□□□□□ -0.53
RPL39P62891 ZNF655-215ENST00000440391 1198 ntTSL 2 BASIC11.71□□□□□ -0.53
RPL39P62891 SMIM4-202ENST00000476842 522 ntTSL 4 BASIC11.71□□□□□ -0.53
RPL39P62891 AC011467.2-201ENST00000598425 242 ntBASIC11.71□□□□□ -0.53
RPL39P62891 AC112504.1-201ENST00000623415 1841 ntBASIC11.71□□□□□ -0.54
RPL39P62891 BRF1-205ENST00000440513 2368 ntTSL 2 BASIC11.71□□□□□ -0.54
RPL39P62891 SLC29A2-207ENST00000619145 2380 ntTSL 5 BASIC11.71□□□□□ -0.54
RPL39P62891 SNX33P1-201ENST00000592116 1762 ntBASIC11.71□□□□□ -0.54
RPL39P62891 HNRNPK-204ENST00000376263 2942 ntAPPRIS P4 TSL 1 (best) BASIC11.71□□□□□ -0.54
RPL39P62891 COL11A2-201ENST00000341947 6425 ntAPPRIS ALT2 TSL 5 BASIC11.71□□□□□ -0.54
RPL39P62891 AP000866.1-201ENST00000499143 2886 ntTSL 1 (best) BASIC11.71□□□□□ -0.54
RPL39P62891 TLE4-204ENST00000376537 2793 ntTSL 1 (best) BASIC11.71□□□□□ -0.54
RPL39P62891 CUL3-202ENST00000344951 6592 ntTSL 2 BASIC11.71□□□□□ -0.54
RPL39P62891 PDXDC1-204ENST00000455313 2183 ntTSL 2 BASIC11.71□□□□□ -0.54
RPL39P62891 RFX1-201ENST00000254325 4332 ntAPPRIS P1 TSL 1 (best) BASIC11.71□□□□□ -0.54
RPL39P62891 AC004817.3-201ENST00000602957 2129 ntBASIC11.71□□□□□ -0.54
RPL39P62891 CACNA2D3-202ENST00000415676 3661 ntAPPRIS ALT2 TSL 1 (best) BASIC11.71□□□□□ -0.54
RPL39P62891 IQCE-204ENST00000404984 2086 ntAPPRIS ALT2 TSL 5 BASIC11.71□□□□□ -0.54
RPL39P62891 TXNDC2-206ENST00000611534 2066 ntAPPRIS ALT2 TSL 5 BASIC11.71□□□□□ -0.54
RPL39P62891 EXO5-203ENST00000372703 2567 ntAPPRIS P1 TSL 2 BASIC11.71□□□□□ -0.54
RPL39P62891 CPT2-201ENST00000371486 3094 ntAPPRIS P1 TSL 1 (best) BASIC11.71□□□□□ -0.54
RPL39P62891 SFI1-209ENST00000443011 3579 ntTSL 5 BASIC11.71□□□□□ -0.54
RPL39P62891 AC126755.2-202ENST00000427999 1547 ntAPPRIS P1 TSL 1 (best) BASIC11.7□□□□□ -0.54
RPL39P62891 ABCC1-201ENST00000399408 6594 ntTSL 5 BASIC11.7□□□□□ -0.54
RPL39P62891 ABCC1-202ENST00000399410 6552 ntAPPRIS P1 TSL 1 (best) BASIC11.7□□□□□ -0.54
RPL39P62891 CD83-201ENST00000379153 2471 ntAPPRIS P1 TSL 1 (best) BASIC11.7□□□□□ -0.54
RPL39P62891 SYNE3-203ENST00000554873 2826 ntTSL 5 BASIC11.7□□□□□ -0.54
RPL39P62891 TMTC1-206ENST00000551659 4228 ntAPPRIS ALT2 TSL 5 BASIC11.7□□□□□ -0.54
RPL39P62891 CPEB2-209ENST00000538197 6878 ntAPPRIS P4 TSL 5 BASIC11.7□□□□□ -0.54
RPL39P62891 RBFADN-201ENST00000562391 1350 ntTSL 1 (best) BASIC11.7□□□□□ -0.54
RPL39P62891 NEDD4-202ENST00000435532 5869 ntAPPRIS P1 TSL 1 (best) BASIC11.7□□□□□ -0.54
RPL39P62891 RUFY2-204ENST00000399200 2685 ntTSL 1 (best) BASIC11.7□□□□□ -0.54
RPL39P62891 AP000253.1-201ENST00000449339 2233 ntTSL 3 BASIC11.7□□□□□ -0.54
RPL39P62891 RBPJ-204ENST00000348160 1752 ntAPPRIS ALT1 TSL 1 (best) BASIC11.7□□□□□ -0.54
RPL39P62891 NAGK-208ENST00000455662 1778 ntTSL 1 (best) BASIC11.7□□□□□ -0.54
RPL39P62891 ST3GAL3-205ENST00000347631 1324 ntTSL 5 BASIC11.7□□□□□ -0.54
RPL39P62891 ARFGAP1-220ENST00000547204 1327 ntTSL 2 BASIC11.7□□□□□ -0.54
RPL39P62891 RTN1-209ENST00000611068 2647 ntTSL 5 BASIC11.7□□□□□ -0.54
Retrieved 100 of 98,524 protein–RNA pairs in 36.7 ms