Protein–RNA interactions for Protein: Q9HCM9

TRIM39, E3 ubiquitin-protein ligase TRIM39, humanhuman

Predictions only

Length 518 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM39Q9HCM9 TMEM86B-201ENST00000327042 1637 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
TRIM39Q9HCM9 MFF-202ENST00000337110 1760 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
TRIM39Q9HCM9 PKLR-201ENST00000342741 2083 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
TRIM39Q9HCM9 MSI2-201ENST00000284073 6364 ntAPPRIS P4 TSL 1 (best) BASIC16.41■□□□□ 0.22
TRIM39Q9HCM9 YY1-201ENST00000262238 6697 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
TRIM39Q9HCM9 TPD52L1-213ENST00000534000 2356 ntAPPRIS P3 TSL 1 (best) BASIC16.41■□□□□ 0.22
TRIM39Q9HCM9 SUZ12-201ENST00000322652 4491 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
TRIM39Q9HCM9 ITPKB-201ENST00000272117 5822 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
TRIM39Q9HCM9 MEST-202ENST00000341441 2443 ntAPPRIS ALT1 TSL 1 (best) BASIC16.4■□□□□ 0.22
TRIM39Q9HCM9 SLC39A13-202ENST00000362021 2296 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
TRIM39Q9HCM9 PCBP3-204ENST00000400309 1986 ntAPPRIS ALT2 TSL 5 BASIC16.4■□□□□ 0.22
TRIM39Q9HCM9 TMEM161A-201ENST00000162044 1820 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
TRIM39Q9HCM9 TAB1-202ENST00000331454 1660 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
TRIM39Q9HCM9 SH2D2A-202ENST00000368199 1658 ntAPPRIS P3 TSL 1 (best) BASIC16.4■□□□□ 0.22
TRIM39Q9HCM9 CCNA1-203ENST00000625767 1699 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
TRIM39Q9HCM9 AC021148.1-201ENST00000513652 1532 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
TRIM39Q9HCM9 PHF20L1-220ENST00000622263 3375 ntAPPRIS P1 TSL 5 BASIC16.4■□□□□ 0.22
TRIM39Q9HCM9 AC004835.1-201ENST00000428222 2907 ntTSL 5 BASIC16.4■□□□□ 0.22
TRIM39Q9HCM9 ARL4C-202ENST00000390645 4013 ntAPPRIS P1 BASIC16.4■□□□□ 0.22
TRIM39Q9HCM9 FAM57B-202ENST00000380495 2313 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
TRIM39Q9HCM9 ADARB1-204ENST00000389863 3563 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
TRIM39Q9HCM9 ACTRT3-201ENST00000330368 2005 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
TRIM39Q9HCM9 GBA2-202ENST00000378094 3757 ntAPPRIS ALT2 TSL 1 (best) BASIC16.4■□□□□ 0.22
TRIM39Q9HCM9 BLOC1S5-202ENST00000397457 2684 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
TRIM39Q9HCM9 KCNK9-203ENST00000520439 1441 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
TRIM39Q9HCM9 CNN2P11-201ENST00000429351 262 ntBASIC16.4■□□□□ 0.22
TRIM39Q9HCM9 IRF3-204ENST00000442265 315 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
TRIM39Q9HCM9 HYPK-202ENST00000442995 1051 ntAPPRIS P2 TSL 1 (best) BASIC16.4■□□□□ 0.22
TRIM39Q9HCM9 AC079140.1-201ENST00000508039 487 ntBASIC16.4■□□□□ 0.22
TRIM39Q9HCM9 AC019257.1-202ENST00000521498 445 ntTSL 5 BASIC16.4■□□□□ 0.22
TRIM39Q9HCM9 METTL23-202ENST00000586200 465 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
TRIM39Q9HCM9 METTL23-212ENST00000590964 1006 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
TRIM39Q9HCM9 AC022145.2-201ENST00000598203 171 ntBASIC16.4■□□□□ 0.22
TRIM39Q9HCM9 AL596442.2-201ENST00000610240 980 ntBASIC16.4■□□□□ 0.22
TRIM39Q9HCM9 LINC00623-204ENST00000617702 746 ntTSL 5 BASIC16.4■□□□□ 0.22
TRIM39Q9HCM9 RAB9A-203ENST00000618931 737 ntAPPRIS P1 TSL 2 BASIC16.4■□□□□ 0.22
TRIM39Q9HCM9 C17orf62-201ENST00000306645 2093 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
TRIM39Q9HCM9 UNC5C-202ENST00000504962 1789 ntTSL 2 BASIC16.4■□□□□ 0.22
TRIM39Q9HCM9 GLMP-201ENST00000362007 1604 ntAPPRIS P3 TSL 1 (best) BASIC16.4■□□□□ 0.22
TRIM39Q9HCM9 DENR-201ENST00000280557 2769 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
TRIM39Q9HCM9 AC009163.2-201ENST00000460606 2125 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
TRIM39Q9HCM9 LITAF-209ENST00000571688 2632 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
TRIM39Q9HCM9 ZNRF3-201ENST00000402174 2667 ntAPPRIS P3 TSL 2 BASIC16.4■□□□□ 0.22
TRIM39Q9HCM9 ELP5-202ENST00000356683 2197 ntTSL 5 BASIC16.4■□□□□ 0.22
TRIM39Q9HCM9 SLC41A3-203ENST00000360370 2169 ntAPPRIS ALT2 TSL 1 (best) BASIC16.4■□□□□ 0.22
TRIM39Q9HCM9 ADGRB2-206ENST00000398556 4879 ntAPPRIS ALT2 TSL 5 BASIC16.4■□□□□ 0.22
TRIM39Q9HCM9 OSGEP-201ENST00000206542 2002 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
TRIM39Q9HCM9 SPATC1-201ENST00000377470 2007 ntAPPRIS P3 TSL 1 (best) BASIC16.4■□□□□ 0.22
TRIM39Q9HCM9 CCDC28A-202ENST00000611852 1505 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
TRIM39Q9HCM9 SRGAP2B-207ENST00000641863 2367 ntAPPRIS P5 BASIC16.4■□□□□ 0.22
TRIM39Q9HCM9 SPG7-201ENST00000268704 3076 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.22
TRIM39Q9HCM9 TCP11L2-201ENST00000299045 2219 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.22
TRIM39Q9HCM9 TRA2A-202ENST00000392502 2229 ntAPPRIS ALT2 TSL 2 BASIC16.39■□□□□ 0.22
TRIM39Q9HCM9 C16orf71-204ENST00000590191 2564 ntAPPRIS ALT2 TSL 5 BASIC16.39■□□□□ 0.22
TRIM39Q9HCM9 MAP4K1-203ENST00000586296 1363 ntTSL 5 BASIC16.39■□□□□ 0.21
TRIM39Q9HCM9 PDXP-202ENST00000403251 1571 ntTSL 2 BASIC16.39■□□□□ 0.21
TRIM39Q9HCM9 VEGFA-205ENST00000372067 3535 ntAPPRIS ALT2 TSL 1 (best) BASIC16.39■□□□□ 0.21
TRIM39Q9HCM9 KCNC1-202ENST00000379472 7965 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
TRIM39Q9HCM9 MAP2K5-201ENST00000178640 2347 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
TRIM39Q9HCM9 PKM-216ENST00000565184 2503 ntAPPRIS ALT1 TSL 1 (best) BASIC16.39■□□□□ 0.21
TRIM39Q9HCM9 AL512625.3-203ENST00000445604 1602 ntTSL 5 BASIC16.39■□□□□ 0.21
TRIM39Q9HCM9 MGAT1-203ENST00000393340 3077 ntAPPRIS P1 TSL 2 BASIC16.39■□□□□ 0.21
TRIM39Q9HCM9 PDE4C-202ENST00000355502 5979 ntAPPRIS P3 TSL 2 BASIC16.39■□□□□ 0.21
TRIM39Q9HCM9 NUPR2-201ENST00000329309 603 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
TRIM39Q9HCM9 DPM2-202ENST00000373110 738 ntTSL 2 BASIC16.39■□□□□ 0.21
TRIM39Q9HCM9 CXCL1-201ENST00000395761 1097 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
TRIM39Q9HCM9 CBX7-202ENST00000401405 784 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
TRIM39Q9HCM9 AC004461.1-201ENST00000412461 403 ntBASIC16.39■□□□□ 0.21
TRIM39Q9HCM9 MEIS1-AS2-201ENST00000439433 690 ntTSL 2 BASIC16.39■□□□□ 0.21
TRIM39Q9HCM9 AL022341.1-201ENST00000455294 389 ntTSL 2 BASIC16.39■□□□□ 0.21
TRIM39Q9HCM9 AC005020.2-201ENST00000455905 830 ntAPPRIS P1 TSL 3 BASIC16.39■□□□□ 0.21
TRIM39Q9HCM9 AC090515.4-201ENST00000558042 450 ntTSL 3 BASIC16.39■□□□□ 0.21
TRIM39Q9HCM9 AC004835.2-201ENST00000603762 682 ntBASIC16.39■□□□□ 0.21
TRIM39Q9HCM9 NPY4R-202ENST00000612632 1800 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
TRIM39Q9HCM9 NPY4R2-202ENST00000613306 1800 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
TRIM39Q9HCM9 CHMP5-201ENST00000223500 1477 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
TRIM39Q9HCM9 TMEM189-UBE2V1-201ENST00000341698 2757 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
TRIM39Q9HCM9 SPAG6-202ENST00000376603 2770 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
TRIM39Q9HCM9 ZNF385A-203ENST00000394313 2430 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
TRIM39Q9HCM9 RBM47-212ENST00000514014 2419 ntTSL 2 BASIC16.39■□□□□ 0.21
TRIM39Q9HCM9 PCDHA13-202ENST00000409494 4884 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
TRIM39Q9HCM9 C1orf56-201ENST00000368926 2096 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
TRIM39Q9HCM9 BSG-215ENST00000618006 1329 ntTSL 2 BASIC16.39■□□□□ 0.21
TRIM39Q9HCM9 DEF6-201ENST00000316637 2262 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
TRIM39Q9HCM9 SLC27A6-201ENST00000262462 3219 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
TRIM39Q9HCM9 SDCBP2-202ENST00000360779 1519 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
TRIM39Q9HCM9 PPOX-202ENST00000367999 1740 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
TRIM39Q9HCM9 SPRYD7-202ENST00000378195 3086 ntTSL 2 BASIC16.39■□□□□ 0.21
TRIM39Q9HCM9 NFATC4-210ENST00000554050 3057 ntAPPRIS ALT2 TSL 1 (best) BASIC16.39■□□□□ 0.21
TRIM39Q9HCM9 KLHDC3-202ENST00000326974 1909 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
TRIM39Q9HCM9 GBGT1-204ENST00000372043 1935 ntTSL 2 BASIC16.39■□□□□ 0.21
TRIM39Q9HCM9 TBC1D2-202ENST00000375063 2100 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
TRIM39Q9HCM9 NAP1L4-201ENST00000380542 2511 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
TRIM39Q9HCM9 HNRNPU-205ENST00000444376 6827 ntAPPRIS P3 TSL 1 (best) BASIC16.39■□□□□ 0.21
TRIM39Q9HCM9 NOX4-207ENST00000525196 1555 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
TRIM39Q9HCM9 PCGF1-201ENST00000233630 1792 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
TRIM39Q9HCM9 SLC52A1-201ENST00000254853 2377 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
TRIM39Q9HCM9 EWSR1-203ENST00000332050 2552 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
TRIM39Q9HCM9 CROCCP3-201ENST00000263511 5368 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
TRIM39Q9HCM9 PDE8B-201ENST00000264917 5956 ntAPPRIS P3 TSL 1 (best) BASIC16.38■□□□□ 0.21
Retrieved 100 of 98,524 protein–RNA pairs in 50.4 ms