Protein–RNA interactions for Protein: O00151

PDLIM1, PDZ and LIM domain protein 1, humanhuman

Predictions only

Length 329 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM1O00151 PRKD2-216ENST00000601806 2906 ntAPPRIS ALT2 TSL 5 BASIC15.81■□□□□ 0.12
PDLIM1O00151 EEPD1-205ENST00000534978 2769 ntAPPRIS P1 TSL 2 BASIC15.81■□□□□ 0.12
PDLIM1O00151 EEF1AKMT3-201ENST00000300209 2563 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
PDLIM1O00151 CDH1-202ENST00000422392 2567 ntTSL 1 (best) BASIC15.81■□□□□ 0.12
PDLIM1O00151 CAST-224ENST00000508830 2539 ntAPPRIS ALT2 TSL 5 BASIC15.81■□□□□ 0.12
PDLIM1O00151 TOR2A-202ENST00000373281 2477 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
PDLIM1O00151 GCLM-201ENST00000370238 4857 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
PDLIM1O00151 AC123912.2-201ENST00000594927 2409 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
PDLIM1O00151 B4GALT3-213ENST00000622395 2414 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
PDLIM1O00151 RBFOX1-212ENST00000550418 4775 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
PDLIM1O00151 CES4A-207ENST00000540947 2284 ntAPPRIS P2 TSL 2 BASIC15.8■□□□□ 0.12
PDLIM1O00151 RREB1-204ENST00000379938 8778 ntAPPRIS P3 TSL 1 (best) BASIC15.8■□□□□ 0.12
PDLIM1O00151 NR2E3-204ENST00000621736 2032 ntTSL 2 BASIC15.8■□□□□ 0.12
PDLIM1O00151 C2orf54-203ENST00000402775 1958 ntAPPRIS ALT2 TSL 2 BASIC15.8■□□□□ 0.12
PDLIM1O00151 KIF5B-201ENST00000302418 5877 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
PDLIM1O00151 AP000787.1-201ENST00000501356 1926 ntTSL 2 BASIC15.8■□□□□ 0.12
PDLIM1O00151 GPBAR1-201ENST00000479077 1869 ntAPPRIS P1 TSL 2 BASIC15.8■□□□□ 0.12
PDLIM1O00151 LSP1-217ENST00000612798 1881 ntAPPRIS ALT2 TSL 2 BASIC15.8■□□□□ 0.12
PDLIM1O00151 CLCF1-201ENST00000312438 1844 ntAPPRIS P3 TSL 1 (best) BASIC15.8■□□□□ 0.12
PDLIM1O00151 ZMYND12-201ENST00000372565 1775 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
PDLIM1O00151 EIF4A3-201ENST00000269349 1734 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
PDLIM1O00151 TOMM40-207ENST00000592434 3415 ntAPPRIS ALT2 TSL 2 BASIC15.8■□□□□ 0.12
PDLIM1O00151 ACE-204ENST00000428043 5120 ntTSL 2 BASIC15.8■□□□□ 0.12
PDLIM1O00151 AC068944.1-201ENST00000514855 1604 ntTSL 2 BASIC15.8■□□□□ 0.12
PDLIM1O00151 LINC01305-201ENST00000420866 3123 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
PDLIM1O00151 MAPK7-204ENST00000395604 3077 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
PDLIM1O00151 APAF1-201ENST00000333991 4539 ntTSL 5 BASIC15.8■□□□□ 0.12
PDLIM1O00151 PITPNM1-202ENST00000436757 4216 ntAPPRIS ALT1 TSL 1 (best) BASIC15.8■□□□□ 0.12
PDLIM1O00151 IDS-202ENST00000370441 1399 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
PDLIM1O00151 CSF3-206ENST00000577675 1360 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
PDLIM1O00151 VAT1-201ENST00000355653 2734 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
PDLIM1O00151 TUBB8P12-201ENST00000308911 1335 ntBASIC15.8■□□□□ 0.12
PDLIM1O00151 TUBB7P-202ENST00000428444 1305 ntBASIC15.8■□□□□ 0.12
PDLIM1O00151 TUBB8P7-204ENST00000567960 1332 ntBASIC15.8■□□□□ 0.12
PDLIM1O00151 SSSCA1-201ENST00000309328 698 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
PDLIM1O00151 INPP5F-203ENST00000369081 874 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
PDLIM1O00151 LENG8-AS1-201ENST00000416022 582 ntTSL 3 BASIC15.8■□□□□ 0.12
PDLIM1O00151 IGHV3-47-201ENST00000425060 335 ntBASIC15.8■□□□□ 0.12
PDLIM1O00151 AC069368.1-202ENST00000437723 750 ntAPPRIS P1 TSL 5 BASIC15.8■□□□□ 0.12
PDLIM1O00151 KLK12-205ENST00000529888 735 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
PDLIM1O00151 CCDC61-201ENST00000536603 1282 ntAPPRIS ALT2 TSL 1 (best) BASIC15.8■□□□□ 0.12
PDLIM1O00151 AC125616.1-201ENST00000540369 1015 ntTSL 3 BASIC15.8■□□□□ 0.12
PDLIM1O00151 AC012615.1-201ENST00000565797 1299 ntBASIC15.8■□□□□ 0.12
PDLIM1O00151 ZNF688-207ENST00000567855 540 ntTSL 2 BASIC15.8■□□□□ 0.12
PDLIM1O00151 ANAPC11-204ENST00000571024 668 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
PDLIM1O00151 AC011840.4-201ENST00000578471 627 ntBASIC15.8■□□□□ 0.12
PDLIM1O00151 ANAPC11-218ENST00000582222 523 ntTSL 2 BASIC15.8■□□□□ 0.12
PDLIM1O00151 Z69720.1-201ENST00000601483 472 ntBASIC15.8■□□□□ 0.12
PDLIM1O00151 HNF4A-208ENST00000609795 1192 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
PDLIM1O00151 REXO2-220ENST00000611665 1158 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
PDLIM1O00151 SCAMP4-213ENST00000621748 1172 ntAPPRIS P1 TSL 5 BASIC15.8■□□□□ 0.12
PDLIM1O00151 KIF1BP-214ENST00000638119 2537 ntTSL 5 BASIC15.8■□□□□ 0.12
PDLIM1O00151 RUFY1-202ENST00000393438 2454 ntAPPRIS ALT2 TSL 1 (best) BASIC15.8■□□□□ 0.12
PDLIM1O00151 ZNF671-201ENST00000317398 2431 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
PDLIM1O00151 SLC25A45-214ENST00000534028 2432 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
PDLIM1O00151 MITF-204ENST00000352241 4814 ntAPPRIS ALT1 TSL 1 (best) BASIC15.8■□□□□ 0.12
PDLIM1O00151 SMIM13-202ENST00000416247 4688 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
PDLIM1O00151 TPD52L2-202ENST00000346249 2297 ntAPPRIS ALT1 TSL 1 (best) BASIC15.8■□□□□ 0.12
PDLIM1O00151 AC013268.4-201ENST00000637413 2228 ntBASIC15.8■□□□□ 0.12
PDLIM1O00151 C15orf61-201ENST00000342683 4253 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
PDLIM1O00151 FAM210A-202ENST00000402563 4240 ntAPPRIS P1 TSL 3 BASIC15.8■□□□□ 0.12
PDLIM1O00151 TSC2-201ENST00000219476 6156 ntAPPRIS P3 TSL 5 BASIC15.8■□□□□ 0.12
PDLIM1O00151 MICALL1-201ENST00000215957 4710 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
PDLIM1O00151 TMCC2-202ENST00000330675 2780 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
PDLIM1O00151 TMEM161A-201ENST00000162044 1820 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
PDLIM1O00151 UBXN11-204ENST00000374217 1846 ntAPPRIS ALT2 TSL 2 BASIC15.8■□□□□ 0.12
PDLIM1O00151 AC007292.2-201ENST00000593524 1812 ntBASIC15.8■□□□□ 0.12
PDLIM1O00151 GPS1-228ENST00000624957 1825 ntAPPRIS ALT1 TSL 5 BASIC15.8■□□□□ 0.12
PDLIM1O00151 INTS11-203ENST00000419704 1798 ntTSL 2 BASIC15.8■□□□□ 0.12
PDLIM1O00151 CCHCR1-201ENST00000376266 2625 ntAPPRIS P3 TSL 1 (best) BASIC15.8■□□□□ 0.12
PDLIM1O00151 EPHA5-202ENST00000354839 3427 ntAPPRIS ALT2 TSL 1 (best) BASIC15.8■□□□□ 0.12
PDLIM1O00151 ATP2A2-204ENST00000539276 4094 ntAPPRIS P4 TSL 1 (best) BASIC15.79■□□□□ 0.12
PDLIM1O00151 MRPL4-203ENST00000393733 1620 ntTSL 5 BASIC15.79■□□□□ 0.12
PDLIM1O00151 ZNF296-202ENST00000622376 1631 ntAPPRIS ALT2 TSL 1 (best) BASIC15.79■□□□□ 0.12
PDLIM1O00151 ARMC5-204ENST00000538189 3017 ntAPPRIS ALT2 TSL 2 BASIC15.79■□□□□ 0.12
PDLIM1O00151 SIGLEC7-201ENST00000305628 1469 ntTSL 1 (best) BASIC15.79■□□□□ 0.12
PDLIM1O00151 PDLIM2-206ENST00000409141 1463 ntTSL 2 BASIC15.79■□□□□ 0.12
PDLIM1O00151 IFNL4-204ENST00000634967 1493 ntAPPRIS ALT2 TSL 1 (best) BASIC15.79■□□□□ 0.12
PDLIM1O00151 AL928970.1-201ENST00000422679 2923 ntTSL 5 BASIC15.79■□□□□ 0.12
PDLIM1O00151 TOP3B-201ENST00000357179 2863 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
PDLIM1O00151 NEK11-210ENST00000510769 2149 ntTSL 2 BASIC15.79■□□□□ 0.12
PDLIM1O00151 OSBPL5-210ENST00000525498 2733 ntTSL 2 BASIC15.79■□□□□ 0.12
PDLIM1O00151 LRCH1-202ENST00000389797 3314 ntAPPRIS ALT2 TSL 1 (best) BASIC15.79■□□□□ 0.12
PDLIM1O00151 KIAA1755-206ENST00000496900 2557 ntAPPRIS ALT2 TSL 2 BASIC15.79■□□□□ 0.12
PDLIM1O00151 SULT2B1-201ENST00000201586 1295 ntAPPRIS P4 TSL 1 (best) BASIC15.79■□□□□ 0.12
PDLIM1O00151 ANKRD37-201ENST00000335174 1141 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
PDLIM1O00151 S100A14-201ENST00000344616 1058 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
PDLIM1O00151 RPS9-203ENST00000391752 772 ntAPPRIS P1 TSL 2 BASIC15.79■□□□□ 0.12
PDLIM1O00151 ELOB-202ENST00000409477 997 ntTSL 1 (best) BASIC15.79■□□□□ 0.12
PDLIM1O00151 ITM2C-204ENST00000409704 1106 ntTSL 5 BASIC15.79■□□□□ 0.12
PDLIM1O00151 AC007967.3-201ENST00000434308 558 ntBASIC15.79■□□□□ 0.12
PDLIM1O00151 ZNF655-218ENST00000454654 571 ntTSL 4 BASIC15.79■□□□□ 0.12
PDLIM1O00151 VENTXP7-201ENST00000475503 772 ntBASIC15.79■□□□□ 0.12
PDLIM1O00151 CDV3-207ENST00000508481 661 ntTSL 3 BASIC15.79■□□□□ 0.12
PDLIM1O00151 TSFM-208ENST00000543727 651 ntTSL 1 (best) BASIC15.79■□□□□ 0.12
PDLIM1O00151 AC007220.1-201ENST00000572466 1055 ntTSL 3 BASIC15.79■□□□□ 0.12
PDLIM1O00151 CYP1B1-AS1-214ENST00000620177 554 ntTSL 4 BASIC15.79■□□□□ 0.12
PDLIM1O00151 GRB2-201ENST00000316615 3181 ntTSL 5 BASIC15.79■□□□□ 0.12
PDLIM1O00151 AC114490.1-201ENST00000417456 3163 ntTSL 2 BASIC15.79■□□□□ 0.12
PDLIM1O00151 MBD4-203ENST00000429544 2478 ntAPPRIS ALT2 TSL 1 (best) BASIC15.79■□□□□ 0.12
Retrieved 100 of 98,524 protein–RNA pairs in 32.7 ms