Protein–RNA interactions for Protein: Q7Z407

CSMD3, CUB and sushi domain-containing protein 3, humanhuman

Predictions only

Length 3,707 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CSMD3Q7Z407 FLJ27354-203ENST00000526694 851 ntTSL 2 BASIC11.32□□□□□ -0.6
CSMD3Q7Z407 TMEFF2-201ENST00000272771 2604 ntAPPRIS P1 TSL 1 (best) BASIC11.32□□□□□ -0.6
CSMD3Q7Z407 PRG2-202ENST00000525955 1367 ntAPPRIS P3 TSL 2 BASIC11.32□□□□□ -0.6
CSMD3Q7Z407 DMAC2-201ENST00000221943 1692 ntAPPRIS P1 TSL 2 BASIC11.32□□□□□ -0.6
CSMD3Q7Z407 NEXN-AS1-201ENST00000421331 2292 ntTSL 2 BASIC11.32□□□□□ -0.6
CSMD3Q7Z407 ZNF200-202ENST00000396870 2373 ntAPPRIS ALT2 TSL 1 (best) BASIC11.32□□□□□ -0.6
CSMD3Q7Z407 ACSF2-201ENST00000300441 2235 ntAPPRIS P1 TSL 1 (best) BASIC11.32□□□□□ -0.6
CSMD3Q7Z407 FDPS-201ENST00000356657 1478 ntAPPRIS P3 TSL 1 (best) BASIC11.32□□□□□ -0.6
CSMD3Q7Z407 TMC6-202ENST00000322914 2786 ntAPPRIS P1 TSL 1 (best) BASIC11.32□□□□□ -0.6
CSMD3Q7Z407 IFFO1-211ENST00000615885 2775 ntTSL 5 BASIC11.32□□□□□ -0.6
CSMD3Q7Z407 MGME1-203ENST00000377710 2336 ntAPPRIS P1 TSL 1 (best) BASIC11.32□□□□□ -0.6
CSMD3Q7Z407 GALNT14-201ENST00000324589 2169 ntTSL 2 BASIC11.32□□□□□ -0.6
CSMD3Q7Z407 TEFM-205ENST00000581216 1891 ntAPPRIS P1 TSL 1 (best) BASIC11.32□□□□□ -0.6
CSMD3Q7Z407 CCKAR-201ENST00000295589 1720 ntAPPRIS P1 TSL 1 (best) BASIC11.32□□□□□ -0.6
CSMD3Q7Z407 ITPA-201ENST00000380113 1185 ntAPPRIS P1 TSL 1 (best) BASIC11.32□□□□□ -0.6
CSMD3Q7Z407 DIRC3-201ENST00000423123 552 ntAPPRIS P1 TSL 4 BASIC11.32□□□□□ -0.6
CSMD3Q7Z407 MEP1AP4-201ENST00000423244 1087 ntBASIC11.32□□□□□ -0.6
CSMD3Q7Z407 AL139289.2-201ENST00000424948 661 ntTSL 2 BASIC11.32□□□□□ -0.6
CSMD3Q7Z407 AC016723.1-201ENST00000430546 633 ntTSL 3 BASIC11.32□□□□□ -0.6
CSMD3Q7Z407 AC006003.1-201ENST00000448541 613 ntTSL 4 BASIC11.32□□□□□ -0.6
CSMD3Q7Z407 GLYCTK-203ENST00000461183 889 ntTSL 3 BASIC11.32□□□□□ -0.6
CSMD3Q7Z407 NKX3-1-202ENST00000523261 713 ntAPPRIS ALT2 TSL 1 (best) BASIC11.32□□□□□ -0.6
CSMD3Q7Z407 DERL2-202ENST00000570848 657 ntTSL 5 BASIC11.32□□□□□ -0.6
CSMD3Q7Z407 HOTAIRM1_1.1-201ENST00000622675 125 ntBASIC11.32□□□□□ -0.6
CSMD3Q7Z407 ABBA01031660.1-201ENST00000635219 756 ntBASIC11.32□□□□□ -0.6
CSMD3Q7Z407 SLC26A5-202ENST00000339444 2474 ntTSL 1 (best) BASIC11.31□□□□□ -0.6
CSMD3Q7Z407 CLK3P2-201ENST00000427566 1453 ntBASIC11.31□□□□□ -0.6
CSMD3Q7Z407 SLC10A3-203ENST00000393586 1893 ntTSL 5 BASIC11.31□□□□□ -0.6
CSMD3Q7Z407 PIGX-202ENST00000392391 3057 ntAPPRIS ALT2 TSL 1 (best) BASIC11.31□□□□□ -0.6
CSMD3Q7Z407 DOK5-201ENST00000262593 1963 ntAPPRIS P1 TSL 1 (best) BASIC11.31□□□□□ -0.6
CSMD3Q7Z407 ZNF256-202ENST00000598928 1958 ntTSL 1 (best) BASIC11.31□□□□□ -0.6
CSMD3Q7Z407 CHRDL1-204ENST00000444321 1658 ntAPPRIS ALT1 TSL 1 (best) BASIC11.31□□□□□ -0.6
CSMD3Q7Z407 SPIDR-227ENST00000541342 3311 ntAPPRIS ALT2 TSL 2 BASIC11.31□□□□□ -0.6
CSMD3Q7Z407 RNF166-203ENST00000541206 2419 ntTSL 2 BASIC11.31□□□□□ -0.6
CSMD3Q7Z407 TMEM91-202ENST00000356385 944 ntTSL 1 (best) BASIC11.31□□□□□ -0.6
CSMD3Q7Z407 TMEM243-202ENST00000423734 601 ntTSL 2 BASIC11.31□□□□□ -0.6
CSMD3Q7Z407 AL132639.3-201ENST00000556537 530 ntTSL 4 BASIC11.31□□□□□ -0.6
CSMD3Q7Z407 AC074044.1-201ENST00000609673 707 ntBASIC11.31□□□□□ -0.6
CSMD3Q7Z407 AL158212.4-201ENST00000624062 1286 ntBASIC11.31□□□□□ -0.6
CSMD3Q7Z407 CRTC1-201ENST00000321949 2501 ntAPPRIS P3 TSL 1 (best) BASIC11.31□□□□□ -0.6
CSMD3Q7Z407 PHGDH-202ENST00000369409 1882 ntTSL 1 (best) BASIC11.31□□□□□ -0.6
CSMD3Q7Z407 HACD3-206ENST00000565299 1465 ntTSL 5 BASIC11.31□□□□□ -0.6
CSMD3Q7Z407 TEX264-205ENST00000416589 1313 ntAPPRIS P3 TSL 1 (best) BASIC11.31□□□□□ -0.6
CSMD3Q7Z407 AC092978.1-201ENST00000474979 1309 ntTSL 5 BASIC11.31□□□□□ -0.6
CSMD3Q7Z407 AC092978.1-202ENST00000637590 1327 ntBASIC11.31□□□□□ -0.6
CSMD3Q7Z407 DENND5B-201ENST00000354285 3132 ntTSL 1 (best) BASIC11.31□□□□□ -0.6
CSMD3Q7Z407 TMEM150A-203ENST00000409668 1776 ntAPPRIS P1 TSL 2 BASIC11.31□□□□□ -0.6
CSMD3Q7Z407 C17orf100-201ENST00000542475 1756 ntAPPRIS P1 BASIC11.31□□□□□ -0.6
CSMD3Q7Z407 POC1A-201ENST00000296484 1898 ntAPPRIS P3 TSL 1 (best) BASIC11.31□□□□□ -0.6
CSMD3Q7Z407 NAT8-201ENST00000272425 947 ntAPPRIS P1 TSL 1 (best) BASIC11.31□□□□□ -0.6
CSMD3Q7Z407 LRRC28-202ENST00000331450 752 ntTSL 1 (best) BASIC11.31□□□□□ -0.6
CSMD3Q7Z407 AC017104.1-201ENST00000415129 720 ntTSL 3 BASIC11.31□□□□□ -0.6
CSMD3Q7Z407 KRT8P13-201ENST00000463294 1010 ntBASIC11.31□□□□□ -0.6
CSMD3Q7Z407 CHMP4BP1-201ENST00000556017 588 ntBASIC11.31□□□□□ -0.6
CSMD3Q7Z407 ACTG1P17-201ENST00000558391 1119 ntBASIC11.31□□□□□ -0.6
CSMD3Q7Z407 AL390726.5-201ENST00000562942 871 ntTSL 2 BASIC11.31□□□□□ -0.6
CSMD3Q7Z407 AC009065.5-201ENST00000565937 596 ntTSL 3 BASIC11.31□□□□□ -0.6
CSMD3Q7Z407 ZNF395-211ENST00000523202 2068 ntAPPRIS P1 TSL 1 (best) BASIC11.31□□□□□ -0.6
CSMD3Q7Z407 CHAD-201ENST00000258969 1739 ntAPPRIS P1 TSL 1 (best) BASIC11.31□□□□□ -0.6
CSMD3Q7Z407 AGAP6-201ENST00000374056 2703 ntAPPRIS ALT2 TSL 1 (best) BASIC11.31□□□□□ -0.6
CSMD3Q7Z407 UVSSA-208ENST00000511563 1494 ntAPPRIS ALT2 TSL 2 BASIC11.31□□□□□ -0.6
CSMD3Q7Z407 SATB2-203ENST00000428695 2135 ntTSL 1 (best) BASIC11.31□□□□□ -0.6
CSMD3Q7Z407 TIMM13-201ENST00000215570 1973 ntAPPRIS P1 TSL 1 (best) BASIC11.31□□□□□ -0.6
CSMD3Q7Z407 CPT2-210ENST00000637252 2739 ntTSL 5 BASIC11.31□□□□□ -0.6
CSMD3Q7Z407 RNFT2-209ENST00000622220 2176 ntTSL 5 BASIC11.31□□□□□ -0.6
CSMD3Q7Z407 FMR1-201ENST00000218200 4333 ntAPPRIS ALT2 TSL 1 (best) BASIC11.31□□□□□ -0.6
CSMD3Q7Z407 TXNDC11-201ENST00000283033 3140 ntAPPRIS P3 TSL 2 BASIC11.31□□□□□ -0.6
CSMD3Q7Z407 GATM-201ENST00000396659 2597 ntAPPRIS P1 TSL 1 (best) BASIC11.31□□□□□ -0.6
CSMD3Q7Z407 AL590627.1-201ENST00000626603 1910 ntTSL 2 BASIC11.31□□□□□ -0.6
CSMD3Q7Z407 GPR108-202ENST00000430424 2009 ntAPPRIS ALT2 TSL 5 BASIC11.31□□□□□ -0.6
CSMD3Q7Z407 LBX2-201ENST00000341396 886 ntTSL 3 BASIC11.31□□□□□ -0.6
CSMD3Q7Z407 AGER-203ENST00000375065 665 ntTSL 2 BASIC11.31□□□□□ -0.6
CSMD3Q7Z407 CBX7-202ENST00000401405 784 ntTSL 1 (best) BASIC11.31□□□□□ -0.6
CSMD3Q7Z407 AL162742.1-201ENST00000434792 954 ntTSL 2 BASIC11.31□□□□□ -0.6
CSMD3Q7Z407 RPARP-AS1-201ENST00000473970 1297 ntTSL 1 (best) BASIC11.31□□□□□ -0.6
CSMD3Q7Z407 AC106886.2-201ENST00000483578 883 ntTSL 5 BASIC11.31□□□□□ -0.6
CSMD3Q7Z407 C3orf67-212ENST00000491845 832 ntTSL 1 (best) BASIC11.31□□□□□ -0.6
CSMD3Q7Z407 AKIP1-210ENST00000534147 1022 ntAPPRIS P3 TSL 1 (best) BASIC11.31□□□□□ -0.6
CSMD3Q7Z407 SLC25A3-217ENST00000552981 1351 ntAPPRIS ALT1 TSL 1 (best) BASIC11.31□□□□□ -0.6
CSMD3Q7Z407 TVP23C-204ENST00000438826 1852 ntAPPRIS ALT1 TSL 1 (best) BASIC11.3□□□□□ -0.6
CSMD3Q7Z407 SLC35E2B-204ENST00000614300 2156 ntTSL 1 (best) BASIC11.3□□□□□ -0.6
CSMD3Q7Z407 PDCD1-201ENST00000334409 2114 ntAPPRIS P1 TSL 1 (best) BASIC11.3□□□□□ -0.6
CSMD3Q7Z407 AC134043.2-201ENST00000624206 2238 ntBASIC11.3□□□□□ -0.6
CSMD3Q7Z407 TINF2-208ENST00000558566 1874 ntAPPRIS ALT2 TSL 2 BASIC11.3□□□□□ -0.6
CSMD3Q7Z407 RHCE-205ENST00000349438 1235 ntTSL 1 (best) BASIC11.3□□□□□ -0.6
CSMD3Q7Z407 CR381653.1-201ENST00000622961 812 ntTSL 3 BASIC11.3□□□□□ -0.6
CSMD3Q7Z407 ARFIP2-201ENST00000254584 2543 ntAPPRIS P1 TSL 1 (best) BASIC11.3□□□□□ -0.6
CSMD3Q7Z407 TMEM155-201ENST00000337677 2313 ntAPPRIS P2 TSL 1 (best) BASIC11.3□□□□□ -0.6
CSMD3Q7Z407 GLIPR2-205ENST00000619700 1645 ntTSL 3 BASIC11.3□□□□□ -0.6
CSMD3Q7Z407 IL12RB2-202ENST00000371000 2454 ntTSL 2 BASIC11.3□□□□□ -0.6
CSMD3Q7Z407 RIMS3-201ENST00000372683 1408 ntAPPRIS P1 TSL 1 (best) BASIC11.3□□□□□ -0.6
CSMD3Q7Z407 DCLK2-204ENST00000506325 2298 ntAPPRIS ALT2 TSL 5 BASIC11.3□□□□□ -0.6
CSMD3Q7Z407 ASCC2-202ENST00000397771 2823 ntAPPRIS P1 TSL 5 BASIC11.3□□□□□ -0.6
CSMD3Q7Z407 RAVER1-207ENST00000615032 1952 ntAPPRIS ALT2 TSL 5 BASIC11.3□□□□□ -0.6
CSMD3Q7Z407 PCGF1-201ENST00000233630 1792 ntAPPRIS P1 TSL 1 (best) BASIC11.3□□□□□ -0.6
CSMD3Q7Z407 TUBBP5-201ENST00000290377 1563 ntTSL 1 (best) BASIC11.3□□□□□ -0.6
CSMD3Q7Z407 BRF1-203ENST00000379937 3314 ntTSL 1 (best) BASIC11.3□□□□□ -0.6
CSMD3Q7Z407 PRKCB-202ENST00000321728 2689 ntAPPRIS ALT1 TSL 1 (best) BASIC11.3□□□□□ -0.6
CSMD3Q7Z407 MOGAT3-202ENST00000379423 933 ntTSL 1 (best) BASIC11.3□□□□□ -0.6
CSMD3Q7Z407 KNCN-202ENST00000396314 608 ntAPPRIS P3 TSL 4 BASIC11.3□□□□□ -0.6
Retrieved 100 of 98,524 protein–RNA pairs in 44.2 ms