Protein–RNA interactions for Protein: P28068

HLA-DMB, HLA class II histocompatibility antigen, DM beta chain, humanhuman

Predictions only

Length 263 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DMBP28068 TMEM106C-214ENST00000550161 976 ntTSL 3 BASIC12.67□□□□□ -0.38
HLA-DMBP28068 DHRS4-205ENST00000558263 1089 ntTSL 5 BASIC12.67□□□□□ -0.38
HLA-DMBP28068 DHRS4L2-207ENST00000558753 556 ntTSL 2 BASIC12.67□□□□□ -0.38
HLA-DMBP28068 AC092725.1-201ENST00000565783 499 ntTSL 4 BASIC12.67□□□□□ -0.38
HLA-DMBP28068 MRPL21-208ENST00000567045 932 ntTSL 2 BASIC12.67□□□□□ -0.38
HLA-DMBP28068 AC104758.1-202ENST00000568184 602 ntTSL 3 BASIC12.67□□□□□ -0.38
HLA-DMBP28068 SLC25A6P4-201ENST00000586535 553 ntBASIC12.67□□□□□ -0.38
HLA-DMBP28068 CIRBP-235ENST00000591935 746 ntAPPRIS ALT1 TSL 3 BASIC12.67□□□□□ -0.38
HLA-DMBP28068 DEF8-228ENST00000610455 816 ntTSL 1 (best) BASIC12.67□□□□□ -0.38
HLA-DMBP28068 TMEM265-201ENST00000615541 995 ntAPPRIS P1 TSL 1 (best) BASIC12.67□□□□□ -0.38
HLA-DMBP28068 AL589182.2-201ENST00000619332 1049 ntBASIC12.67□□□□□ -0.38
HLA-DMBP28068 AL355877.3-201ENST00000622820 899 ntBASIC12.67□□□□□ -0.38
HLA-DMBP28068 TST-204ENST00000622841 1105 ntAPPRIS P1 TSL 5 BASIC12.67□□□□□ -0.38
HLA-DMBP28068 ABBA01031661.1-201ENST00000634362 1253 ntBASIC12.67□□□□□ -0.38
HLA-DMBP28068 LINC00554-201ENST00000564841 3011 ntBASIC12.67□□□□□ -0.38
HLA-DMBP28068 HS3ST3B1-201ENST00000360954 5367 ntAPPRIS P1 TSL 1 (best) BASIC12.67□□□□□ -0.38
HLA-DMBP28068 FUT2-201ENST00000391876 1593 ntAPPRIS P1 TSL 2 BASIC12.67□□□□□ -0.38
HLA-DMBP28068 KCNT1-206ENST00000486577 3760 ntAPPRIS ALT2 TSL 5 BASIC12.67□□□□□ -0.38
HLA-DMBP28068 COL5A1-201ENST00000371817 8471 ntAPPRIS P3 TSL 1 (best) BASIC12.67□□□□□ -0.38
HLA-DMBP28068 WDR74-204ENST00000525239 1736 ntAPPRIS P1 TSL 2 BASIC12.67□□□□□ -0.38
HLA-DMBP28068 AL512652.2-201ENST00000625156 1716 ntBASIC12.67□□□□□ -0.38
HLA-DMBP28068 BLK-205ENST00000529894 2017 ntTSL 5 BASIC12.67□□□□□ -0.38
HLA-DMBP28068 KCNJ12-201ENST00000331718 2198 ntAPPRIS P1 TSL 1 (best) BASIC12.67□□□□□ -0.38
HLA-DMBP28068 TPCN1-201ENST00000335509 5274 ntAPPRIS P1 TSL 1 (best) BASIC12.67□□□□□ -0.38
HLA-DMBP28068 TPD52L2-204ENST00000351424 2302 ntAPPRIS P4 TSL 2 BASIC12.67□□□□□ -0.38
HLA-DMBP28068 ABLIM2-202ENST00000361581 2472 ntAPPRIS ALT2 TSL 1 (best) BASIC12.67□□□□□ -0.38
HLA-DMBP28068 PSD-201ENST00000020673 4183 ntAPPRIS P1 TSL 1 (best) BASIC12.67□□□□□ -0.38
HLA-DMBP28068 SERTAD4-201ENST00000367012 5219 ntAPPRIS P1 TSL 1 (best) BASIC12.67□□□□□ -0.38
HLA-DMBP28068 TOP3BP1-201ENST00000420768 1380 ntBASIC12.67□□□□□ -0.38
HLA-DMBP28068 PAN3-AS1-201ENST00000563843 1351 ntBASIC12.67□□□□□ -0.38
HLA-DMBP28068 GGT3P-204ENST00000453783 1664 ntBASIC12.67□□□□□ -0.38
HLA-DMBP28068 PDE4DIP-230ENST00000530472 1690 ntTSL 1 (best) BASIC12.67□□□□□ -0.38
HLA-DMBP28068 MEIS3-206ENST00000559524 1828 ntAPPRIS P3 TSL 2 BASIC12.67□□□□□ -0.38
HLA-DMBP28068 TMEM237-213ENST00000621467 1824 ntAPPRIS ALT2 TSL 1 (best) BASIC12.67□□□□□ -0.38
HLA-DMBP28068 SLFNL1-201ENST00000302946 1951 ntAPPRIS P3 TSL 1 (best) BASIC12.67□□□□□ -0.38
HLA-DMBP28068 FRS2-206ENST00000549921 1952 ntAPPRIS P1 TSL 1 (best) BASIC12.67□□□□□ -0.38
HLA-DMBP28068 PSEN2-211ENST00000626989 1972 ntTSL 5 BASIC12.67□□□□□ -0.38
HLA-DMBP28068 MAGI3-204ENST00000369617 3911 ntTSL 1 (best) BASIC12.67□□□□□ -0.38
HLA-DMBP28068 STC2-201ENST00000265087 5353 ntAPPRIS P1 TSL 1 (best) BASIC12.66□□□□□ -0.38
HLA-DMBP28068 NIPA2-204ENST00000398014 3130 ntAPPRIS P1 TSL 5 BASIC12.66□□□□□ -0.38
HLA-DMBP28068 CACFD1-201ENST00000291722 2688 ntTSL 2 BASIC12.66□□□□□ -0.38
HLA-DMBP28068 ZNF418-208ENST00000599852 2501 ntTSL 2 BASIC12.66□□□□□ -0.38
HLA-DMBP28068 SLC5A6-203ENST00000408041 2230 ntAPPRIS P1 TSL 1 (best) BASIC12.66□□□□□ -0.38
HLA-DMBP28068 UBE3A-227ENST00000638011 8742 ntAPPRIS ALT1 TSL 5 BASIC12.66□□□□□ -0.38
HLA-DMBP28068 GCLM-201ENST00000370238 4857 ntAPPRIS P1 TSL 1 (best) BASIC12.66□□□□□ -0.38
HLA-DMBP28068 CA9-201ENST00000378357 1618 ntAPPRIS P1 TSL 1 (best) BASIC12.66□□□□□ -0.38
HLA-DMBP28068 SLC38A11-202ENST00000409058 1647 ntAPPRIS ALT2 TSL 5 BASIC12.66□□□□□ -0.38
HLA-DMBP28068 TOR4A-201ENST00000357503 4148 ntAPPRIS P1 TSL 2 BASIC12.66□□□□□ -0.38
HLA-DMBP28068 PPP4R3A-205ENST00000554684 4108 ntAPPRIS P1 TSL 1 (best) BASIC12.66□□□□□ -0.38
HLA-DMBP28068 PAXBP1-202ENST00000331923 3995 ntAPPRIS P1 TSL 1 (best) BASIC12.66□□□□□ -0.38
HLA-DMBP28068 TRAPPC3-210ENST00000617904 1305 ntTSL 2 BASIC12.66□□□□□ -0.38
HLA-DMBP28068 RASA4-204ENST00000462172 2634 ntTSL 1 (best) BASIC12.66□□□□□ -0.38
HLA-DMBP28068 WASHC2C-202ENST00000359860 4471 ntAPPRIS ALT2 TSL 5 BASIC12.66□□□□□ -0.38
HLA-DMBP28068 MYCBPAP-201ENST00000323776 3186 ntAPPRIS P2 TSL 1 (best) BASIC12.66□□□□□ -0.38
HLA-DMBP28068 PI4KAP1-204ENST00000612579 1703 ntBASIC12.66□□□□□ -0.38
HLA-DMBP28068 ABCB8-211ENST00000477092 1596 ntTSL 5 BASIC12.66□□□□□ -0.38
HLA-DMBP28068 AC006504.4-201ENST00000592118 1568 ntBASIC12.66□□□□□ -0.38
HLA-DMBP28068 HCFC1-201ENST00000310441 8869 ntAPPRIS P2 TSL 1 (best) BASIC12.66□□□□□ -0.38
HLA-DMBP28068 BCAT2-209ENST00000599246 1449 ntTSL 1 (best) BASIC12.66□□□□□ -0.38
HLA-DMBP28068 AL136309.2-201ENST00000427049 2277 ntTSL 2 BASIC12.66□□□□□ -0.38
HLA-DMBP28068 CD1E-209ENST00000368164 869 ntTSL 1 (best) BASIC12.66□□□□□ -0.38
HLA-DMBP28068 RAB24-204ENST00000393611 1236 ntAPPRIS P1 TSL 1 (best) BASIC12.66□□□□□ -0.38
HLA-DMBP28068 ESR1-204ENST00000406599 1251 ntTSL 1 (best) BASIC12.66□□□□□ -0.38
HLA-DMBP28068 ELK2BP-201ENST00000415014 1224 ntBASIC12.66□□□□□ -0.38
HLA-DMBP28068 VPS13A-AS1-201ENST00000415172 519 ntTSL 2 BASIC12.66□□□□□ -0.38
HLA-DMBP28068 DMKN-206ENST00000418261 1257 ntAPPRIS ALT2 TSL 1 (best) BASIC12.66□□□□□ -0.38
HLA-DMBP28068 RPAP3-203ENST00000432584 2133 ntTSL 2 BASIC12.66□□□□□ -0.38
HLA-DMBP28068 AC016999.1-201ENST00000447880 452 ntTSL 3 BASIC12.66□□□□□ -0.38
HLA-DMBP28068 AC099805.1-202ENST00000519927 1057 ntTSL 5 BASIC12.66□□□□□ -0.38
HLA-DMBP28068 H2AFJ-203ENST00000544848 644 ntAPPRIS P1 BASIC12.66□□□□□ -0.38
HLA-DMBP28068 AHSA1-208ENST00000555517 832 ntTSL 2 BASIC12.66□□□□□ -0.38
HLA-DMBP28068 ADAM10-217ENST00000561288 583 ntTSL 3 BASIC12.66□□□□□ -0.38
HLA-DMBP28068 AC139887.3-201ENST00000568585 713 ntBASIC12.66□□□□□ -0.38
HLA-DMBP28068 PAM16-208ENST00000573553 722 ntTSL 2 BASIC12.66□□□□□ -0.38
HLA-DMBP28068 CHMP4A-211ENST00000609024 735 ntAPPRIS P1 TSL 1 (best) BASIC12.66□□□□□ -0.38
HLA-DMBP28068 FAM25C-201ENST00000617224 319 ntAPPRIS P1 TSL 1 (best) BASIC12.66□□□□□ -0.38
HLA-DMBP28068 AC092902.2-205ENST00000622381 394 ntTSL 5 BASIC12.66□□□□□ -0.38
HLA-DMBP28068 TP73-AS1-207ENST00000624167 988 ntBASIC12.66□□□□□ -0.38
HLA-DMBP28068 XPO5-201ENST00000265351 5364 ntAPPRIS P1 TSL 1 (best) BASIC12.66□□□□□ -0.38
HLA-DMBP28068 SCAI-202ENST00000373549 1968 ntTSL 1 (best) BASIC12.66□□□□□ -0.38
HLA-DMBP28068 POR-218ENST00000461988 2522 ntAPPRIS P1 TSL 1 (best) BASIC12.66□□□□□ -0.38
HLA-DMBP28068 COL4A1-204ENST00000543140 2547 ntTSL 1 (best) BASIC12.66□□□□□ -0.38
HLA-DMBP28068 NRXN1-229ENST00000628515 3243 ntTSL 5 BASIC12.66□□□□□ -0.38
HLA-DMBP28068 PPA2-201ENST00000341695 1684 ntAPPRIS P1 TSL 1 (best) BASIC12.66□□□□□ -0.38
HLA-DMBP28068 PRPF40B-201ENST00000261897 3602 ntAPPRIS ALT2 TSL 1 (best) BASIC12.66□□□□□ -0.38
HLA-DMBP28068 TLE2-203ENST00000443826 2238 ntTSL 2 BASIC12.66□□□□□ -0.38
HLA-DMBP28068 SLC9A7P1-201ENST00000554295 3311 ntBASIC12.66□□□□□ -0.38
HLA-DMBP28068 FYCO1-205ENST00000535325 8578 ntAPPRIS ALT2 TSL 5 BASIC12.66□□□□□ -0.38
HLA-DMBP28068 AC002310.6-201ENST00000624451 1377 ntBASIC12.66□□□□□ -0.38
HLA-DMBP28068 CPEB2-201ENST00000259997 5612 ntAPPRIS ALT2 TSL 5 BASIC12.66□□□□□ -0.38
HLA-DMBP28068 CYB561D1-205ENST00000430195 5077 ntTSL 2 BASIC12.66□□□□□ -0.38
HLA-DMBP28068 NIM1K-201ENST00000326035 2313 ntAPPRIS P1 TSL 1 (best) BASIC12.66□□□□□ -0.38
HLA-DMBP28068 DDX19B-207ENST00000563206 1765 ntTSL 5 BASIC12.66□□□□□ -0.38
HLA-DMBP28068 EPHX1-206ENST00000614058 1789 ntAPPRIS P1 TSL 1 (best) BASIC12.66□□□□□ -0.38
HLA-DMBP28068 STT3B-201ENST00000295770 4248 ntAPPRIS P1 TSL 1 (best) BASIC12.66□□□□□ -0.38
HLA-DMBP28068 C16orf71-201ENST00000299320 2722 ntAPPRIS P2 TSL 1 (best) BASIC12.66□□□□□ -0.38
HLA-DMBP28068 PDXDC1-204ENST00000455313 2183 ntTSL 2 BASIC12.66□□□□□ -0.38
HLA-DMBP28068 WDR45B-201ENST00000392325 2587 ntAPPRIS P1 TSL 1 (best) BASIC12.66□□□□□ -0.38
HLA-DMBP28068 ASIC1-202ENST00000447966 3778 ntAPPRIS P1 TSL 1 (best) BASIC12.66□□□□□ -0.38
HLA-DMBP28068 INHA-201ENST00000243786 1468 ntAPPRIS P1 TSL 1 (best) BASIC12.65□□□□□ -0.38
Retrieved 100 of 98,524 protein–RNA pairs in 35.3 ms