Protein–RNA interactions for Protein: Q9UHB6

LIMA1, LIM domain and actin-binding protein 1, humanhuman

Known RBP Predictions only

Length 759 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1Q9UHB6 ADAMTSL4-204ENST00000369041 2908 ntTSL 5 BASIC18.1■□□□□ 0.49
LIMA1Q9UHB6 PIK3IP1-203ENST00000441972 2374 ntTSL 2 BASIC18.1■□□□□ 0.49
LIMA1Q9UHB6 TMEM57-202ENST00000399766 3294 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
LIMA1Q9UHB6 MGME1-202ENST00000377709 1936 ntTSL 2 BASIC18.1■□□□□ 0.49
LIMA1Q9UHB6 LINC00668-206ENST00000581725 1902 ntTSL 2 BASIC18.1■□□□□ 0.49
LIMA1Q9UHB6 LONRF3-201ENST00000304778 2989 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
LIMA1Q9UHB6 ZSCAN18-208ENST00000595944 1768 ntTSL 2 BASIC18.09■□□□□ 0.49
LIMA1Q9UHB6 MRS2-202ENST00000378353 1740 ntAPPRIS ALT2 TSL 1 (best) BASIC18.09■□□□□ 0.49
LIMA1Q9UHB6 ATP6AP2-225ENST00000637482 1648 ntAPPRIS ALT2 TSL 5 BASIC18.09■□□□□ 0.49
LIMA1Q9UHB6 BHMT2-205ENST00000521567 1537 ntTSL 2 BASIC18.09■□□□□ 0.49
LIMA1Q9UHB6 SNX6-202ENST00000396526 3398 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
LIMA1Q9UHB6 LMCD1-204ENST00000426878 1431 ntTSL 2 BASIC18.09■□□□□ 0.49
LIMA1Q9UHB6 PHF12-205ENST00000577226 7679 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
LIMA1Q9UHB6 SLC6A17-201ENST00000331565 6427 ntAPPRIS P1 TSL 2 BASIC18.09■□□□□ 0.49
LIMA1Q9UHB6 MRNIP-201ENST00000292586 1238 ntAPPRIS P4 TSL 1 (best) BASIC18.09■□□□□ 0.49
LIMA1Q9UHB6 ISCU-201ENST00000311893 994 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
LIMA1Q9UHB6 DNAH14-205ENST00000366850 1103 ntTSL 5 BASIC18.09■□□□□ 0.49
LIMA1Q9UHB6 DPM2-202ENST00000373110 738 ntTSL 2 BASIC18.09■□□□□ 0.49
LIMA1Q9UHB6 C1QC-202ENST00000374639 1183 ntAPPRIS P1 TSL 2 BASIC18.09■□□□□ 0.49
LIMA1Q9UHB6 AP001107.6-201ENST00000526655 516 ntTSL 3 BASIC18.09■□□□□ 0.49
LIMA1Q9UHB6 L2HGDH-205ENST00000555423 841 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
LIMA1Q9UHB6 L2HGDH-206ENST00000555610 804 ntTSL 5 BASIC18.09■□□□□ 0.49
LIMA1Q9UHB6 PRELID1P1-202ENST00000567272 903 ntBASIC18.09■□□□□ 0.49
LIMA1Q9UHB6 CYB561-216ENST00000582297 897 ntTSL 3 BASIC18.09■□□□□ 0.49
LIMA1Q9UHB6 SETD3-209ENST00000630307 1281 ntTSL 5 BASIC18.09■□□□□ 0.49
LIMA1Q9UHB6 TLDC2-201ENST00000217320 2083 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
LIMA1Q9UHB6 MAP3K11-201ENST00000309100 3566 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
LIMA1Q9UHB6 AC007495.1-201ENST00000501259 2678 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
LIMA1Q9UHB6 CROCCP1-201ENST00000426910 5675 ntBASIC18.09■□□□□ 0.49
LIMA1Q9UHB6 AC016757.1-205ENST00000470346 1888 ntTSL 2 BASIC18.09■□□□□ 0.49
LIMA1Q9UHB6 PUF60-201ENST00000313352 1804 ntAPPRIS ALT1 TSL 1 (best) BASIC18.09■□□□□ 0.49
LIMA1Q9UHB6 FAM49B-224ENST00000522941 1700 ntTSL 5 BASIC18.09■□□□□ 0.49
LIMA1Q9UHB6 REPS2-201ENST00000303843 7771 ntAPPRIS ALT2 TSL 1 (best) BASIC18.09■□□□□ 0.49
LIMA1Q9UHB6 SIGLEC10-201ENST00000339313 2256 ntAPPRIS P3 TSL 1 (best) BASIC18.09■□□□□ 0.49
LIMA1Q9UHB6 AC126177.1-201ENST00000547829 2218 ntBASIC18.08■□□□□ 0.49
LIMA1Q9UHB6 MYZAP-202ENST00000380565 2181 ntAPPRIS ALT2 TSL 1 (best) BASIC18.08■□□□□ 0.49
LIMA1Q9UHB6 MEAF6-201ENST00000296214 1525 ntAPPRIS ALT1 TSL 1 (best) BASIC18.08■□□□□ 0.49
LIMA1Q9UHB6 C19orf48-201ENST00000345523 1503 ntAPPRIS P1 TSL 2 BASIC18.08■□□□□ 0.49
LIMA1Q9UHB6 AC012569.1-201ENST00000591191 1524 ntBASIC18.08■□□□□ 0.49
LIMA1Q9UHB6 TSPAN12-202ENST00000415871 1495 ntAPPRIS P1 TSL 5 BASIC18.08■□□□□ 0.49
LIMA1Q9UHB6 SLC3A2-208ENST00000536981 1486 ntTSL 2 BASIC18.08■□□□□ 0.49
LIMA1Q9UHB6 INHBB-201ENST00000295228 3204 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.49
LIMA1Q9UHB6 CERS6-201ENST00000305747 7217 ntAPPRIS P3 TSL 2 BASIC18.08■□□□□ 0.49
LIMA1Q9UHB6 ERVK13-1-203ENST00000564340 1449 ntTSL 1 (best) BASIC18.08■□□□□ 0.49
LIMA1Q9UHB6 LTBP4-205ENST00000396819 4764 ntAPPRIS ALT2 TSL 1 (best) BASIC18.08■□□□□ 0.49
LIMA1Q9UHB6 RSPO1-203ENST00000612451 2463 ntTSL 1 (best) BASIC18.08■□□□□ 0.49
LIMA1Q9UHB6 LOXL3-203ENST00000409249 2431 ntTSL 5 BASIC18.08■□□□□ 0.49
LIMA1Q9UHB6 ARHGEF28-211ENST00000512883 2936 ntTSL 2 BASIC18.08■□□□□ 0.49
LIMA1Q9UHB6 HEY1-208ENST00000523976 1325 ntTSL 2 BASIC18.08■□□□□ 0.49
LIMA1Q9UHB6 EGFR-203ENST00000344576 2864 ntTSL 1 (best) BASIC18.08■□□□□ 0.48
LIMA1Q9UHB6 PRSS27-201ENST00000302641 1130 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
LIMA1Q9UHB6 RMDN1-202ENST00000430676 1106 ntTSL 2 BASIC18.08■□□□□ 0.48
LIMA1Q9UHB6 AL162431.1-201ENST00000434447 543 ntTSL 3 BASIC18.08■□□□□ 0.48
LIMA1Q9UHB6 TTLL12-204ENST00000494035 888 ntTSL 2 BASIC18.08■□□□□ 0.48
LIMA1Q9UHB6 CCND3-213ENST00000510503 1257 ntTSL 3 BASIC18.08■□□□□ 0.48
LIMA1Q9UHB6 AP1S2-206ENST00000545766 576 ntTSL 1 (best) BASIC18.08■□□□□ 0.48
LIMA1Q9UHB6 PHOSPHO2-207ENST00000616524 1253 ntAPPRIS P1 TSL 3 BASIC18.08■□□□□ 0.48
LIMA1Q9UHB6 FP565260.3-204ENST00000623795 2238 ntTSL 2 BASIC18.08■□□□□ 0.48
LIMA1Q9UHB6 ACSS1-201ENST00000323482 3680 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
LIMA1Q9UHB6 PRMT1-217ENST00000532489 1686 ntTSL 5 BASIC18.08■□□□□ 0.48
LIMA1Q9UHB6 FANCA-203ENST00000389302 1641 ntTSL 1 (best) BASIC18.08■□□□□ 0.48
LIMA1Q9UHB6 ANKRD24-202ENST00000318934 3906 ntAPPRIS P2 TSL 5 BASIC18.08■□□□□ 0.48
LIMA1Q9UHB6 MRPL49-201ENST00000279242 2019 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
LIMA1Q9UHB6 HTR1B-201ENST00000369947 2021 ntAPPRIS P1 BASIC18.08■□□□□ 0.48
LIMA1Q9UHB6 ATP6AP2-201ENST00000378438 2022 ntAPPRIS ALT2 TSL 5 BASIC18.08■□□□□ 0.48
LIMA1Q9UHB6 PGAP2-205ENST00000396993 1566 ntTSL 1 (best) BASIC18.08■□□□□ 0.48
LIMA1Q9UHB6 TMPO-AS1-202ENST00000548760 3357 ntTSL 1 (best) BASIC18.08■□□□□ 0.48
LIMA1Q9UHB6 GSPT2-201ENST00000340438 2802 ntAPPRIS P1 BASIC18.08■□□□□ 0.48
LIMA1Q9UHB6 ASNS-201ENST00000175506 2356 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
LIMA1Q9UHB6 ALDOA-201ENST00000338110 2384 ntAPPRIS P2 TSL 1 (best) BASIC18.08■□□□□ 0.48
LIMA1Q9UHB6 VWA1-203ENST00000476993 4511 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
LIMA1Q9UHB6 NRXN1-229ENST00000628515 3243 ntTSL 5 BASIC18.08■□□□□ 0.48
LIMA1Q9UHB6 KDM4F-201ENST00000545950 1917 ntAPPRIS P1 BASIC18.08■□□□□ 0.48
LIMA1Q9UHB6 CLDND1-222ENST00000510545 2124 ntAPPRIS P1 TSL 5 BASIC18.07■□□□□ 0.48
LIMA1Q9UHB6 FMNL3-202ENST00000352151 4006 ntAPPRIS P3 TSL 2 BASIC18.07■□□□□ 0.48
LIMA1Q9UHB6 CCHCR1-202ENST00000396263 2490 ntTSL 5 BASIC18.07■□□□□ 0.48
LIMA1Q9UHB6 PDE1C-202ENST00000396182 2420 ntTSL 1 (best) BASIC18.07■□□□□ 0.48
LIMA1Q9UHB6 MFGE8-215ENST00000566497 1689 ntAPPRIS P1 TSL 5 BASIC18.07■□□□□ 0.48
LIMA1Q9UHB6 HOXB3-205ENST00000470495 4208 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
LIMA1Q9UHB6 SLC39A1-203ENST00000368621 2398 ntAPPRIS P1 TSL 2 BASIC18.07■□□□□ 0.48
LIMA1Q9UHB6 FSD2-202ENST00000541889 2356 ntTSL 1 (best) BASIC18.07■□□□□ 0.48
LIMA1Q9UHB6 NRN1L-201ENST00000339176 710 ntAPPRIS P2 TSL 1 (best) BASIC18.07■□□□□ 0.48
LIMA1Q9UHB6 ARPC4-203ENST00000433034 926 ntTSL 3 BASIC18.07■□□□□ 0.48
LIMA1Q9UHB6 BATF2-204ENST00000527716 1230 ntTSL 2 BASIC18.07■□□□□ 0.48
LIMA1Q9UHB6 MRPL49-206ENST00000531705 489 ntTSL 5 BASIC18.07■□□□□ 0.48
LIMA1Q9UHB6 AL450267.1-201ENST00000557174 520 ntTSL 5 BASIC18.07■□□□□ 0.48
LIMA1Q9UHB6 LINC00910-203ENST00000587874 544 ntTSL 4 BASIC18.07■□□□□ 0.48
LIMA1Q9UHB6 ZEB1-AS1-209ENST00000607455 559 ntTSL 4 BASIC18.07■□□□□ 0.48
LIMA1Q9UHB6 AC008735.5-201ENST00000623544 497 ntBASIC18.07■□□□□ 0.48
LIMA1Q9UHB6 ARPC5-201ENST00000294742 1637 ntAPPRIS ALT1 TSL 1 (best) BASIC18.07■□□□□ 0.48
LIMA1Q9UHB6 OGFOD2-202ENST00000397389 2308 ntTSL 2 BASIC18.07■□□□□ 0.48
LIMA1Q9UHB6 PRKAR2B-201ENST00000265717 3745 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
LIMA1Q9UHB6 SCARB1-202ENST00000339570 3329 ntTSL 5 BASIC18.07■□□□□ 0.48
LIMA1Q9UHB6 RBPMS-204ENST00000397323 2941 ntAPPRIS P3 TSL 1 (best) BASIC18.07■□□□□ 0.48
LIMA1Q9UHB6 NLE1-202ENST00000442241 2588 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
LIMA1Q9UHB6 OSBPL6-203ENST00000357080 2217 ntTSL 1 (best) BASIC18.07■□□□□ 0.48
LIMA1Q9UHB6 HYAL1-201ENST00000266031 2517 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
LIMA1Q9UHB6 TMEM51-202ENST00000376014 1843 ntAPPRIS P1 TSL 2 BASIC18.07■□□□□ 0.48
LIMA1Q9UHB6 MBP-202ENST00000355994 2772 ntTSL 5 BASIC18.07■□□□□ 0.48
LIMA1Q9UHB6 AC019205.2-202ENST00000441363 2403 ntTSL 5 BASIC18.07■□□□□ 0.48
Retrieved 100 of 98,524 protein–RNA pairs in 56 ms