Protein–RNA interactions for Protein: Q86TS7

LINC00643, Putative UPF0730 protein encoded by LINC00643, humanhuman

Predictions only

Length 51 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00643Q86TS7 SIRT3-202ENST00000524564 1395 ntTSL 2 BASIC10.31□□□□□ -0.76
LINC00643Q86TS7 ATP13A2-202ENST00000341676 3681 ntAPPRIS ALT2 TSL 1 (best) BASIC10.31□□□□□ -0.76
LINC00643Q86TS7 WWOX-203ENST00000406884 1701 ntTSL 1 (best) BASIC10.31□□□□□ -0.76
LINC00643Q86TS7 PCCB-204ENST00000462637 1715 ntAPPRIS ALT2 TSL 3 BASIC10.31□□□□□ -0.76
LINC00643Q86TS7 CPA5-205ENST00000466363 2099 ntAPPRIS P1 TSL 5 BASIC10.31□□□□□ -0.76
LINC00643Q86TS7 PPP1R13L-202ENST00000418234 3118 ntAPPRIS P1 TSL 1 (best) BASIC10.31□□□□□ -0.76
LINC00643Q86TS7 MEAF6-205ENST00000448519 666 ntAPPRIS ALT1 TSL 1 (best) BASIC10.31□□□□□ -0.76
LINC00643Q86TS7 AC137630.1-201ENST00000452042 782 ntTSL 4 BASIC10.31□□□□□ -0.76
LINC00643Q86TS7 AC099669.1-201ENST00000457331 456 ntTSL 3 BASIC10.31□□□□□ -0.76
LINC00643Q86TS7 STOX2-205ENST00000513034 807 ntTSL 3 BASIC10.31□□□□□ -0.76
LINC00643Q86TS7 AC068385.1-201ENST00000533218 409 ntTSL 3 BASIC10.31□□□□□ -0.76
LINC00643Q86TS7 AL356805.1-201ENST00000556383 341 ntTSL 3 BASIC10.31□□□□□ -0.76
LINC00643Q86TS7 MAX-217ENST00000557277 728 ntTSL 3 BASIC10.31□□□□□ -0.76
LINC00643Q86TS7 RARRES2P10-201ENST00000564312 460 ntBASIC10.31□□□□□ -0.76
LINC00643Q86TS7 CYB561-214ENST00000582034 1193 ntTSL 2 BASIC10.31□□□□□ -0.76
LINC00643Q86TS7 SLC16A10-206ENST00000612036 1231 ntTSL 5 BASIC10.31□□□□□ -0.76
LINC00643Q86TS7 ATXN3-252ENST00000620536 1044 ntTSL 5 BASIC10.31□□□□□ -0.76
LINC00643Q86TS7 ATXN3-253ENST00000621269 936 ntTSL 5 BASIC10.31□□□□□ -0.76
LINC00643Q86TS7 FP565260.6-204ENST00000620528 1640 ntAPPRIS P1 TSL 1 (best) BASIC10.31□□□□□ -0.76
LINC00643Q86TS7 TMEM87B-201ENST00000283206 5212 ntAPPRIS P1 TSL 2 BASIC10.31□□□□□ -0.76
LINC00643Q86TS7 UPF3B-202ENST00000345865 2335 ntAPPRIS P1 TSL 1 (best) BASIC10.31□□□□□ -0.76
LINC00643Q86TS7 SEPT6-201ENST00000343984 2693 ntTSL 1 (best) BASIC10.31□□□□□ -0.76
LINC00643Q86TS7 CAMK2D-204ENST00000394522 2696 ntAPPRIS ALT1 TSL 1 (best) BASIC10.31□□□□□ -0.76
LINC00643Q86TS7 SCUBE2-201ENST00000309263 3727 ntTSL 5 BASIC10.31□□□□□ -0.76
LINC00643Q86TS7 MLLT11-201ENST00000368921 4075 ntAPPRIS P1 TSL 1 (best) BASIC10.31□□□□□ -0.76
LINC00643Q86TS7 NTN4-201ENST00000343702 3615 ntAPPRIS P1 TSL 1 (best) BASIC10.31□□□□□ -0.76
LINC00643Q86TS7 ARSE-201ENST00000381134 1853 ntAPPRIS P1 TSL 1 (best) BASIC10.31□□□□□ -0.76
LINC00643Q86TS7 AGTPBP1-208ENST00000628899 4222 ntTSL 2 BASIC10.31□□□□□ -0.76
LINC00643Q86TS7 ZNF354B-201ENST00000322434 2802 ntAPPRIS P1 TSL 1 (best) BASIC10.31□□□□□ -0.76
LINC00643Q86TS7 AC079336.5-201ENST00000581360 2480 ntTSL 2 BASIC10.31□□□□□ -0.76
LINC00643Q86TS7 MEOX1-202ENST00000329168 2129 ntTSL 1 (best) BASIC10.31□□□□□ -0.76
LINC00643Q86TS7 DBH-AS1-201ENST00000425189 2139 ntTSL 1 (best) BASIC10.31□□□□□ -0.76
LINC00643Q86TS7 UBFD1-207ENST00000567212 4727 ntAPPRIS ALT2 TSL 2 BASIC10.31□□□□□ -0.76
LINC00643Q86TS7 SPRY2-201ENST00000377102 2708 ntAPPRIS P1 TSL 1 (best) BASIC10.31□□□□□ -0.76
LINC00643Q86TS7 PPT1-213ENST00000641319 2388 ntBASIC10.31□□□□□ -0.76
LINC00643Q86TS7 MPP1-202ENST00000369534 2042 ntAPPRIS P1 TSL 1 (best) BASIC10.31□□□□□ -0.76
LINC00643Q86TS7 CCDC40-202ENST00000374876 2010 ntTSL 1 (best) BASIC10.31□□□□□ -0.76
LINC00643Q86TS7 EDEM3-202ENST00000367512 6678 ntAPPRIS ALT2 TSL 1 (best) BASIC10.31□□□□□ -0.76
LINC00643Q86TS7 SLC4A11-202ENST00000380059 3229 ntAPPRIS ALT2 TSL 2 BASIC10.31□□□□□ -0.76
LINC00643Q86TS7 MEFV-201ENST00000219596 3499 ntAPPRIS P2 TSL 1 (best) BASIC10.31□□□□□ -0.76
LINC00643Q86TS7 RPS6KC1-206ENST00000543354 4082 ntTSL 1 (best) BASIC10.31□□□□□ -0.76
LINC00643Q86TS7 SMARCA5-201ENST00000283131 7923 ntAPPRIS P1 TSL 1 (best) BASIC10.31□□□□□ -0.76
LINC00643Q86TS7 SCPEP1-201ENST00000262288 1942 ntAPPRIS P1 TSL 1 (best) BASIC10.31□□□□□ -0.76
LINC00643Q86TS7 ZSCAN32-215ENST00000618425 2788 ntTSL 2 BASIC10.31□□□□□ -0.76
LINC00643Q86TS7 UBE3A-220ENST00000630424 5075 ntAPPRIS P3 TSL 5 BASIC10.31□□□□□ -0.76
LINC00643Q86TS7 PTPN9-201ENST00000306726 3862 ntAPPRIS ALT2 TSL 5 BASIC10.31□□□□□ -0.76
LINC00643Q86TS7 FBXL12-206ENST00000588922 1843 ntTSL 2 BASIC10.3□□□□□ -0.76
LINC00643Q86TS7 MKS1-204ENST00000537529 2083 ntTSL 1 (best) BASIC10.3□□□□□ -0.76
LINC00643Q86TS7 PPIL2-202ENST00000398831 2574 ntAPPRIS P1 TSL 1 (best) BASIC10.3□□□□□ -0.76
LINC00643Q86TS7 PCED1A-201ENST00000356872 1706 ntTSL 2 BASIC10.3□□□□□ -0.76
LINC00643Q86TS7 FGFR1-201ENST00000326324 3816 ntTSL 1 (best) BASIC10.3□□□□□ -0.76
LINC00643Q86TS7 FGFR1-204ENST00000356207 3824 ntTSL 1 (best) BASIC10.3□□□□□ -0.76
LINC00643Q86TS7 HAPLN3-201ENST00000359595 1980 ntAPPRIS P1 TSL 1 (best) BASIC10.3□□□□□ -0.76
LINC00643Q86TS7 WRAP73-202ENST00000378322 1998 ntTSL 1 (best) BASIC10.3□□□□□ -0.76
LINC00643Q86TS7 DDOST-206ENST00000602624 1963 ntAPPRIS P1 TSL 1 (best) BASIC10.3□□□□□ -0.76
LINC00643Q86TS7 IGF2BP1-201ENST00000290341 8274 ntAPPRIS P1 TSL 1 (best) BASIC10.3□□□□□ -0.76
LINC00643Q86TS7 MBD1-210ENST00000457839 2473 ntAPPRIS ALT2 TSL 2 BASIC10.3□□□□□ -0.76
LINC00643Q86TS7 AC091951.1-201ENST00000512854 2465 ntBASIC10.3□□□□□ -0.76
LINC00643Q86TS7 AJ011931.1-201ENST00000618749 2492 ntBASIC10.3□□□□□ -0.76
LINC00643Q86TS7 AGRN-201ENST00000379370 7323 ntAPPRIS P1 TSL 1 (best) BASIC10.3□□□□□ -0.76
LINC00643Q86TS7 STAG3-206ENST00000426455 4450 ntAPPRIS P3 TSL 1 (best) BASIC10.3□□□□□ -0.76
LINC00643Q86TS7 GJD2-201ENST00000290374 2889 ntAPPRIS P1 TSL 1 (best) BASIC10.3□□□□□ -0.76
LINC00643Q86TS7 ORMDL3-204ENST00000579695 2106 ntAPPRIS P1 TSL 1 (best) BASIC10.3□□□□□ -0.76
LINC00643Q86TS7 NEFL-203ENST00000619417 1879 ntTSL 5 BASIC10.3□□□□□ -0.76
LINC00643Q86TS7 BAHCC1-201ENST00000307745 10342 ntAPPRIS ALT2 TSL 5 BASIC10.3□□□□□ -0.76
LINC00643Q86TS7 TTC7A-203ENST00000409245 3033 ntTSL 2 BASIC10.3□□□□□ -0.76
LINC00643Q86TS7 GP6-201ENST00000310373 2268 ntAPPRIS P3 TSL 1 (best) BASIC10.3□□□□□ -0.76
LINC00643Q86TS7 USH1C-207ENST00000527720 2278 ntTSL 1 (best) BASIC10.3□□□□□ -0.76
LINC00643Q86TS7 ZKSCAN7-202ENST00000341840 1757 ntTSL 1 (best) BASIC10.3□□□□□ -0.76
LINC00643Q86TS7 OVOL1-203ENST00000532448 1774 ntTSL 1 (best) BASIC10.3□□□□□ -0.76
LINC00643Q86TS7 TMEM101-201ENST00000206380 1536 ntAPPRIS P1 TSL 1 (best) BASIC10.3□□□□□ -0.76
LINC00643Q86TS7 ENTPD2-201ENST00000312665 1500 ntTSL 1 (best) BASIC10.3□□□□□ -0.76
LINC00643Q86TS7 UCHL5-202ENST00000367449 1507 ntAPPRIS ALT1 TSL 1 (best) BASIC10.3□□□□□ -0.76
LINC00643Q86TS7 PLTP-202ENST00000372420 1530 ntTSL 2 BASIC10.3□□□□□ -0.76
LINC00643Q86TS7 SIGLECL1-208ENST00000614422 1516 ntAPPRIS P3 TSL 1 (best) BASIC10.3□□□□□ -0.76
LINC00643Q86TS7 WIZ-202ENST00000389282 4067 ntTSL 1 (best) BASIC10.3□□□□□ -0.76
LINC00643Q86TS7 CNKSR1-214ENST00000531191 2673 ntTSL 5 BASIC10.3□□□□□ -0.76
LINC00643Q86TS7 RPL31-208ENST00000409733 825 ntAPPRIS P3 TSL 1 (best) BASIC10.3□□□□□ -0.76
LINC00643Q86TS7 AL355987.3-201ENST00000456614 735 ntAPPRIS P1 TSL 4 BASIC10.3□□□□□ -0.76
LINC00643Q86TS7 NRIP3-203ENST00000531090 980 ntTSL 2 BASIC10.3□□□□□ -0.76
LINC00643Q86TS7 MCRIP1-203ENST00000538396 925 ntAPPRIS P1 TSL 1 (best) BASIC10.3□□□□□ -0.76
LINC00643Q86TS7 LOXL1-AS1-208ENST00000565756 885 ntTSL 2 BASIC10.3□□□□□ -0.76
LINC00643Q86TS7 ACYP2-207ENST00000606082 713 ntTSL 5 BASIC10.3□□□□□ -0.76
LINC00643Q86TS7 AL928921.2-201ENST00000641325 2442 ntBASIC10.3□□□□□ -0.76
LINC00643Q86TS7 DNAJC2-203ENST00000379263 2167 ntAPPRIS P1 TSL 1 (best) BASIC10.3□□□□□ -0.76
LINC00643Q86TS7 MIR193BHG-211ENST00000641433 5365 ntBASIC10.3□□□□□ -0.76
LINC00643Q86TS7 C4orf19-201ENST00000284437 1949 ntAPPRIS P1 TSL 1 (best) BASIC10.3□□□□□ -0.76
LINC00643Q86TS7 CAMKV-202ENST00000463537 2818 ntTSL 5 BASIC10.3□□□□□ -0.76
LINC00643Q86TS7 AC105760.2-201ENST00000418430 2341 ntTSL 2 BASIC10.3□□□□□ -0.76
LINC00643Q86TS7 BBS2-201ENST00000245157 2963 ntAPPRIS P1 TSL 1 (best) BASIC10.3□□□□□ -0.76
LINC00643Q86TS7 USP45-202ENST00000329966 1444 ntTSL 1 (best) BASIC10.3□□□□□ -0.76
LINC00643Q86TS7 ROPN1-206ENST00000479867 2056 ntTSL 1 (best) BASIC10.3□□□□□ -0.76
LINC00643Q86TS7 KIRREL3-205ENST00000529097 3397 ntAPPRIS ALT2 TSL 1 (best) BASIC10.3□□□□□ -0.76
LINC00643Q86TS7 PPIL6-202ENST00000424445 4031 ntTSL 5 BASIC10.3□□□□□ -0.76
LINC00643Q86TS7 MROH2A-208ENST00000610772 5324 ntAPPRIS P2 TSL 5 BASIC10.3□□□□□ -0.76
LINC00643Q86TS7 RAP2B-201ENST00000323534 8351 ntAPPRIS P1 BASIC10.3□□□□□ -0.76
LINC00643Q86TS7 SATB2-211ENST00000614512 4972 ntTSL 5 BASIC10.3□□□□□ -0.76
LINC00643Q86TS7 EHD4-201ENST00000220325 6416 ntAPPRIS P1 TSL 1 (best) BASIC10.3□□□□□ -0.76
LINC00643Q86TS7 SERGEF-201ENST00000265965 1566 ntAPPRIS P1 TSL 1 (best) BASIC10.3□□□□□ -0.76
LINC00643Q86TS7 PARVB-203ENST00000404989 1591 ntTSL 1 (best) BASIC10.3□□□□□ -0.76
Retrieved 100 of 98,524 protein–RNA pairs in 28.2 ms