Protein–RNA interactions for Protein: P48742

LHX1, LIM/homeobox protein Lhx1, humanhuman

Predictions only

Length 406 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LHX1P48742 HOXB5-201ENST00000239151 2041 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
LHX1P48742 ID3-201ENST00000374561 1251 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
LHX1P48742 LETM2-202ENST00000379957 1873 ntAPPRIS ALT2 TSL 5 BASIC17.51■□□□□ 0.39
LHX1P48742 HLA-H-201ENST00000383620 1096 ntBASIC17.51■□□□□ 0.39
LHX1P48742 NME1-NME2-202ENST00000393193 1021 ntAPPRIS P2 TSL 2 BASIC17.51■□□□□ 0.39
LHX1P48742 PCAT6-201ENST00000417262 748 ntTSL 2 BASIC17.51■□□□□ 0.39
LHX1P48742 TMEM120A-201ENST00000417509 1444 ntTSL 2 BASIC17.51■□□□□ 0.39
LHX1P48742 GPR108-202ENST00000430424 2009 ntAPPRIS ALT2 TSL 5 BASIC17.51■□□□□ 0.39
LHX1P48742 CYMP-203ENST00000474680 1263 ntBASIC17.51■□□□□ 0.39
LHX1P48742 AC092691.1-201ENST00000484092 554 ntTSL 4 BASIC17.51■□□□□ 0.39
LHX1P48742 AHRR-203ENST00000505113 2173 ntAPPRIS ALT2 TSL 1 (best) BASIC17.51■□□□□ 0.39
LHX1P48742 RARRES2P9-201ENST00000565168 469 ntBASIC17.51■□□□□ 0.39
LHX1P48742 TLE2-219ENST00000591529 2483 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
LHX1P48742 AP3S2-216ENST00000617003 1561 ntBASIC17.51■□□□□ 0.39
LHX1P48742 SELENOH-206ENST00000622257 1291 ntAPPRIS ALT1 TSL 5 BASIC17.51■□□□□ 0.39
LHX1P48742 ORC5-208ENST00000626700 344 ntTSL 3 BASIC17.51■□□□□ 0.39
LHX1P48742 AL157832.3-201ENST00000635764 1005 ntTSL 5 BASIC17.51■□□□□ 0.39
LHX1P48742 FAM181B-201ENST00000329203 3924 ntAPPRIS P1 BASIC17.51■□□□□ 0.39
LHX1P48742 CXADR-201ENST00000284878 6254 ntAPPRIS P3 TSL 1 (best) BASIC17.51■□□□□ 0.39
LHX1P48742 VPS51-201ENST00000279281 2714 ntAPPRIS P2 TSL 1 (best) BASIC17.51■□□□□ 0.39
LHX1P48742 GNA13-201ENST00000439174 4922 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
LHX1P48742 TLE2-204ENST00000455444 2253 ntTSL 5 BASIC17.51■□□□□ 0.39
LHX1P48742 MRPS22-212ENST00000495075 1547 ntAPPRIS P2 TSL 1 (best) BASIC17.51■□□□□ 0.39
LHX1P48742 ACTR3-208ENST00000535589 1530 ntTSL 2 BASIC17.51■□□□□ 0.39
LHX1P48742 WDR61-201ENST00000267973 1387 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
LHX1P48742 SMARCA4-215ENST00000590574 5282 ntAPPRIS ALT1 TSL 5 BASIC17.51■□□□□ 0.39
LHX1P48742 CHKA-201ENST00000265689 2530 ntAPPRIS P4 TSL 1 (best) BASIC17.51■□□□□ 0.39
LHX1P48742 CADM3-201ENST00000368124 2546 ntAPPRIS P3 TSL 1 (best) BASIC17.51■□□□□ 0.39
LHX1P48742 CYP2S1-201ENST00000310054 2782 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
LHX1P48742 UNC13A-206ENST00000552293 5314 ntAPPRIS ALT2 TSL 5 BASIC17.51■□□□□ 0.39
LHX1P48742 DPY19L3-206ENST00000587077 2456 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
LHX1P48742 GALNT17-201ENST00000333538 3884 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
LHX1P48742 OGFOD2-224ENST00000545612 1465 ntTSL 2 BASIC17.5■□□□□ 0.39
LHX1P48742 PRPF19-201ENST00000227524 2157 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
LHX1P48742 CSRNP1-201ENST00000273153 3148 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
LHX1P48742 ANXA8-203ENST00000583874 1860 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
LHX1P48742 SIRT1-201ENST00000212015 4094 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
LHX1P48742 ARCN1-203ENST00000392859 1709 ntTSL 2 BASIC17.5■□□□□ 0.39
LHX1P48742 MATN3-202ENST00000421259 1443 ntAPPRIS ALT2 TSL 1 (best) BASIC17.5■□□□□ 0.39
LHX1P48742 NSFL1C-202ENST00000353088 2611 ntTSL 2 BASIC17.5■□□□□ 0.39
LHX1P48742 MREG-205ENST00000620139 2618 ntAPPRIS P1 TSL 2 BASIC17.5■□□□□ 0.39
LHX1P48742 CACNB2-206ENST00000377328 1233 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
LHX1P48742 FAM220BP-201ENST00000377689 816 ntBASIC17.5■□□□□ 0.39
LHX1P48742 TMEM91-205ENST00000436170 864 ntTSL 5 BASIC17.5■□□□□ 0.39
LHX1P48742 SMIM15-AS1-201ENST00000506902 796 ntTSL 3 BASIC17.5■□□□□ 0.39
LHX1P48742 PXN-AS1-201ENST00000535200 1170 ntTSL 2 BASIC17.5■□□□□ 0.39
LHX1P48742 AC131009.1-201ENST00000539078 426 ntTSL 5 BASIC17.5■□□□□ 0.39
LHX1P48742 AC106028.4-201ENST00000614509 607 ntBASIC17.5■□□□□ 0.39
LHX1P48742 GOLGA2-215ENST00000639983 1038 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
LHX1P48742 CTNNAL1-201ENST00000325551 2490 ntAPPRIS P3 TSL 1 (best) BASIC17.5■□□□□ 0.39
LHX1P48742 TLE3-205ENST00000539550 2464 ntTSL 2 BASIC17.5■□□□□ 0.39
LHX1P48742 PHKG2-201ENST00000328273 1536 ntAPPRIS ALT1 TSL 5 BASIC17.5■□□□□ 0.39
LHX1P48742 LIPE-AS1-201ENST00000457234 1501 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
LHX1P48742 GALNT14-201ENST00000324589 2169 ntTSL 2 BASIC17.5■□□□□ 0.39
LHX1P48742 ANKRD23-203ENST00000418232 2156 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
LHX1P48742 COMMD6-203ENST00000377615 1793 ntAPPRIS P1 TSL 5 BASIC17.5■□□□□ 0.39
LHX1P48742 RSBN1-205ENST00000615321 2418 ntTSL 2 BASIC17.5■□□□□ 0.39
LHX1P48742 IRF9-203ENST00000557894 1391 ntTSL 5 BASIC17.5■□□□□ 0.39
LHX1P48742 SLC1A5-205ENST00000594991 2031 ntTSL 2 BASIC17.5■□□□□ 0.39
LHX1P48742 BLOC1S5-202ENST00000397457 2684 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
LHX1P48742 PLEKHJ1-211ENST00000589097 2251 ntAPPRIS P1 TSL 2 BASIC17.5■□□□□ 0.39
LHX1P48742 AD000864.1-201ENST00000624076 2295 ntBASIC17.5■□□□□ 0.39
LHX1P48742 PCDH7-206ENST00000543491 4457 ntAPPRIS ALT2 BASIC17.5■□□□□ 0.39
LHX1P48742 SPECC1-203ENST00000395525 2536 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
LHX1P48742 SEPT2-245ENST00000616972 3446 ntTSL 2 BASIC17.5■□□□□ 0.39
LHX1P48742 TIGAR-201ENST00000179259 2782 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
LHX1P48742 GFOD2-201ENST00000268797 2126 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
LHX1P48742 CSTB-204ENST00000640406 2354 ntTSL 2 BASIC17.5■□□□□ 0.39
LHX1P48742 BCS1L-212ENST00000439945 1483 ntAPPRIS P1 TSL 5 BASIC17.5■□□□□ 0.39
LHX1P48742 PPP3CA-203ENST00000394854 4685 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
LHX1P48742 ZNF710-201ENST00000268154 4617 ntAPPRIS P1 TSL 2 BASIC17.49■□□□□ 0.39
LHX1P48742 THAP12-201ENST00000260045 3300 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
LHX1P48742 NOL4L-211ENST00000621426 6577 ntAPPRIS P2 TSL 5 BASIC17.49■□□□□ 0.39
LHX1P48742 SNAPC3-202ENST00000380821 5680 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
LHX1P48742 POLR3E-203ENST00000418581 2529 ntTSL 2 BASIC17.49■□□□□ 0.39
LHX1P48742 TMEM130-202ENST00000345589 2261 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
LHX1P48742 CHRNA5-201ENST00000299565 3623 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
LHX1P48742 SCARF1-205ENST00000571272 2871 ntAPPRIS ALT2 TSL 1 (best) BASIC17.49■□□□□ 0.39
LHX1P48742 ALOX12-201ENST00000251535 2358 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
LHX1P48742 LIM2-201ENST00000221973 983 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
LHX1P48742 C11orf71-201ENST00000325636 652 ntAPPRIS P3 TSL 1 (best) BASIC17.49■□□□□ 0.39
LHX1P48742 SNHG11-201ENST00000359074 1031 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
LHX1P48742 IFNGR1-201ENST00000367739 2139 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
LHX1P48742 CD81-202ENST00000381036 880 ntTSL 3 BASIC17.49■□□□□ 0.39
LHX1P48742 TMEM191A-202ENST00000419950 663 ntTSL 3 BASIC17.49■□□□□ 0.39
LHX1P48742 PRRT3-AS1-201ENST00000431558 614 ntTSL 2 BASIC17.49■□□□□ 0.39
LHX1P48742 PLAC9P1-202ENST00000433290 400 ntTSL 2 BASIC17.49■□□□□ 0.39
LHX1P48742 AC022201.2-201ENST00000445084 287 ntTSL 5 BASIC17.49■□□□□ 0.39
LHX1P48742 OST4-203ENST00000456793 561 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
LHX1P48742 IQSEC2-204ENST00000485377 835 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
LHX1P48742 AC013565.3-201ENST00000565547 450 ntTSL 3 BASIC17.49■□□□□ 0.39
LHX1P48742 AC004408.1-201ENST00000579256 573 ntTSL 4 BASIC17.49■□□□□ 0.39
LHX1P48742 MOB3A-209ENST00000592280 1071 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
LHX1P48742 FADS3-207ENST00000527697 1640 ntTSL 5 BASIC17.49■□□□□ 0.39
LHX1P48742 ITGB4-201ENST00000200181 5919 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
LHX1P48742 KDM6A-213ENST00000611820 5924 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
LHX1P48742 FBXO33-201ENST00000298097 3853 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
LHX1P48742 IL3RA-202ENST00000381469 1476 ntTSL 5 BASIC17.49■□□□□ 0.39
LHX1P48742 NDUFA11-205ENST00000592634 2154 ntTSL 2 BASIC17.49■□□□□ 0.39
LHX1P48742 ACBD3-201ENST00000366812 3573 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
Retrieved 100 of 98,524 protein–RNA pairs in 34.4 ms