Protein–RNA interactions for Protein: P33552

CKS2, Cyclin-dependent kinases regulatory subunit 2, humanhuman

Predictions only

Length 79 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CKS2P33552 BIN3-201ENST00000276416 1835 ntAPPRIS P1 TSL 1 (best) BASIC12.27□□□□□ -0.45
CKS2P33552 ZNF655-203ENST00000357864 1370 ntTSL 2 BASIC12.27□□□□□ -0.45
CKS2P33552 AL353692.3-201ENST00000407031 1396 ntBASIC12.27□□□□□ -0.45
CKS2P33552 MIR4300HG-201ENST00000500502 1397 ntTSL 1 (best) BASIC12.27□□□□□ -0.45
CKS2P33552 ANO6-202ENST00000423947 5504 ntAPPRIS ALT2 TSL 1 (best) BASIC12.27□□□□□ -0.45
CKS2P33552 SUGP2-215ENST00000601879 5546 ntAPPRIS P3 TSL 2 BASIC12.27□□□□□ -0.45
CKS2P33552 CMKLR1-204ENST00000550402 1893 ntAPPRIS ALT2 TSL 1 (best) BASIC12.27□□□□□ -0.45
CKS2P33552 ELL-203ENST00000596124 1852 ntTSL 1 (best) BASIC12.27□□□□□ -0.45
CKS2P33552 LAT-204ENST00000395461 1448 ntAPPRIS ALT2 TSL 1 (best) BASIC12.27□□□□□ -0.45
CKS2P33552 COL4A3-202ENST00000396578 8097 ntAPPRIS P1 TSL 1 (best) BASIC12.27□□□□□ -0.45
CKS2P33552 VGLL4-210ENST00000426568 1428 ntTSL 1 (best) BASIC12.27□□□□□ -0.45
CKS2P33552 ANKMY1-207ENST00000403283 2874 ntTSL 1 (best) BASIC12.27□□□□□ -0.45
CKS2P33552 CLK2-202ENST00000361168 1934 ntAPPRIS P3 TSL 1 (best) BASIC12.27□□□□□ -0.45
CKS2P33552 SBSN-201ENST00000452271 1945 ntAPPRIS ALT2 TSL 1 (best) BASIC12.27□□□□□ -0.45
CKS2P33552 KDM5B-202ENST00000367264 6449 ntTSL 1 (best) BASIC12.27□□□□□ -0.45
CKS2P33552 PRSS50-201ENST00000460241 2960 ntAPPRIS P1 TSL 2 BASIC12.27□□□□□ -0.45
CKS2P33552 SRRD-201ENST00000215917 4020 ntAPPRIS P1 TSL 1 (best) BASIC12.27□□□□□ -0.45
CKS2P33552 TERT-201ENST00000310581 4018 ntAPPRIS P3 TSL 1 (best) BASIC12.27□□□□□ -0.45
CKS2P33552 RER1-209ENST00000605895 3044 ntAPPRIS P1 TSL 1 (best) BASIC12.27□□□□□ -0.45
CKS2P33552 LSP1-202ENST00000381775 2016 ntAPPRIS ALT2 TSL 2 BASIC12.27□□□□□ -0.45
CKS2P33552 MYOG-201ENST00000241651 1528 ntAPPRIS P1 TSL 1 (best) BASIC12.27□□□□□ -0.45
CKS2P33552 KCNQ4-201ENST00000347132 4099 ntAPPRIS P2 TSL 1 (best) BASIC12.27□□□□□ -0.45
CKS2P33552 CNOT10-202ENST00000331889 2573 ntTSL 1 (best) BASIC12.26□□□□□ -0.45
CKS2P33552 CD9-203ENST00000382518 1556 ntAPPRIS P1 TSL 5 BASIC12.26□□□□□ -0.45
CKS2P33552 ZBTB22-207ENST00000418724 2645 ntAPPRIS P1 TSL 1 (best) BASIC12.26□□□□□ -0.45
CKS2P33552 ZNF662-201ENST00000328199 3186 ntAPPRIS P1 TSL 5 BASIC12.26□□□□□ -0.45
CKS2P33552 NEK2-202ENST00000366999 2131 ntAPPRIS P1 TSL 1 (best) BASIC12.26□□□□□ -0.45
CKS2P33552 C3orf67-201ENST00000295966 2650 ntTSL 2 BASIC12.26□□□□□ -0.45
CKS2P33552 GPR161-204ENST00000367838 2676 ntAPPRIS P1 TSL 1 (best) BASIC12.26□□□□□ -0.45
CKS2P33552 AC092198.1-201ENST00000447651 2691 ntTSL 2 BASIC12.26□□□□□ -0.45
CKS2P33552 LINC00895-201ENST00000629028 1637 ntBASIC12.26□□□□□ -0.45
CKS2P33552 SLC6A13-201ENST00000343164 2185 ntAPPRIS P1 TSL 1 (best) BASIC12.26□□□□□ -0.45
CKS2P33552 WBP2-215ENST00000591399 2225 ntAPPRIS P2 TSL 5 BASIC12.26□□□□□ -0.45
CKS2P33552 PDE4DIP-230ENST00000530472 1690 ntTSL 1 (best) BASIC12.26□□□□□ -0.45
CKS2P33552 CDH23-202ENST00000299366 3954 ntTSL 5 BASIC12.26□□□□□ -0.45
CKS2P33552 GGT4P-201ENST00000623672 1708 ntBASIC12.26□□□□□ -0.45
CKS2P33552 GIPR-201ENST00000263281 1791 ntAPPRIS ALT2 TSL 1 (best) BASIC12.26□□□□□ -0.45
CKS2P33552 SCNN1A-221ENST00000543768 2361 ntAPPRIS ALT2 TSL 2 BASIC12.26□□□□□ -0.45
CKS2P33552 TET2-207ENST00000513237 10166 ntAPPRIS ALT2 TSL 1 (best) BASIC12.26□□□□□ -0.45
CKS2P33552 TET2-209ENST00000540549 10166 ntAPPRIS P2 TSL 1 (best) BASIC12.26□□□□□ -0.45
CKS2P33552 DZIP1-204ENST00000376829 3738 ntAPPRIS P4 TSL 1 (best) BASIC12.26□□□□□ -0.45
CKS2P33552 H2BFM-201ENST00000355016 1882 ntAPPRIS P1 TSL 2 BASIC12.26□□□□□ -0.45
CKS2P33552 PHGDH-202ENST00000369409 1882 ntTSL 1 (best) BASIC12.26□□□□□ -0.45
CKS2P33552 SP100-204ENST00000409341 1898 ntTSL 1 (best) BASIC12.26□□□□□ -0.45
CKS2P33552 DGCR6L-201ENST00000248879 1154 ntAPPRIS P1 TSL 1 (best) BASIC12.26□□□□□ -0.45
CKS2P33552 VCY1B-201ENST00000250823 550 ntAPPRIS P1 TSL 1 (best) BASIC12.26□□□□□ -0.45
CKS2P33552 VCY-201ENST00000250825 550 ntAPPRIS P1 TSL 1 (best) BASIC12.26□□□□□ -0.45
CKS2P33552 MRPL15-201ENST00000260102 1147 ntAPPRIS P1 TSL 1 (best) BASIC12.26□□□□□ -0.45
CKS2P33552 RESP18-201ENST00000333527 795 ntAPPRIS P2 TSL 1 (best) BASIC12.26□□□□□ -0.45
CKS2P33552 SMIM11A-202ENST00000399295 1074 ntAPPRIS P1 TSL 2 BASIC12.26□□□□□ -0.45
CKS2P33552 UNC5B-AS1-201ENST00000447119 647 ntTSL 2 BASIC12.26□□□□□ -0.45
CKS2P33552 AC002467.1-201ENST00000457510 657 ntTSL 3 BASIC12.26□□□□□ -0.45
CKS2P33552 AP003733.1-201ENST00000491725 852 ntBASIC12.26□□□□□ -0.45
CKS2P33552 AKIP1-206ENST00000525005 1128 ntTSL 2 BASIC12.26□□□□□ -0.45
CKS2P33552 GCHFR-202ENST00000558467 785 ntTSL 2 BASIC12.26□□□□□ -0.45
CKS2P33552 CDKN2A-213ENST00000579122 666 ntTSL 3 BASIC12.26□□□□□ -0.45
CKS2P33552 STK25P1-201ENST00000585406 838 ntBASIC12.26□□□□□ -0.45
CKS2P33552 GPX4-207ENST00000589115 812 ntTSL 2 BASIC12.26□□□□□ -0.45
CKS2P33552 AP000525.1-201ENST00000608286 694 ntBASIC12.26□□□□□ -0.45
CKS2P33552 C18orf21-207ENST00000610527 1059 ntTSL 2 BASIC12.26□□□□□ -0.45
CKS2P33552 C18orf21-208ENST00000618334 856 ntTSL 3 BASIC12.26□□□□□ -0.45
CKS2P33552 SMIM11B-207ENST00000624758 1074 ntAPPRIS P1 TSL 2 BASIC12.26□□□□□ -0.45
CKS2P33552 RPS27A-211ENST00000639844 606 ntTSL 5 BASIC12.26□□□□□ -0.45
CKS2P33552 VPS72-207ENST00000640458 689 ntTSL 5 BASIC12.26□□□□□ -0.45
CKS2P33552 TTC13-201ENST00000366661 3253 ntAPPRIS P3 TSL 1 (best) BASIC12.26□□□□□ -0.45
CKS2P33552 SMIM24-201ENST00000215531 1329 ntAPPRIS P2 TSL 1 (best) BASIC12.26□□□□□ -0.45
CKS2P33552 ILF3-210ENST00000588657 2697 ntAPPRIS ALT2 TSL 5 BASIC12.26□□□□□ -0.45
CKS2P33552 EOMES-201ENST00000295743 3386 ntAPPRIS P1 TSL 1 (best) BASIC12.26□□□□□ -0.45
CKS2P33552 COMP-203ENST00000542601 2707 ntTSL 1 (best) BASIC12.26□□□□□ -0.45
CKS2P33552 KIAA0319-203ENST00000535378 6896 ntAPPRIS ALT2 TSL 2 BASIC12.26□□□□□ -0.45
CKS2P33552 ARID5A-201ENST00000357485 2188 ntAPPRIS P1 TSL 1 (best) BASIC12.26□□□□□ -0.45
CKS2P33552 C5orf30-202ENST00000510890 2933 ntAPPRIS P1 TSL 2 BASIC12.26□□□□□ -0.45
CKS2P33552 FP565260.3-204ENST00000623795 2238 ntTSL 2 BASIC12.26□□□□□ -0.45
CKS2P33552 KRT73-201ENST00000305748 2284 ntAPPRIS P1 TSL 1 (best) BASIC12.26□□□□□ -0.45
CKS2P33552 AP000550.1-201ENST00000420508 4833 ntTSL 1 (best) BASIC12.26□□□□□ -0.45
CKS2P33552 LDB3-208ENST00000623007 1664 ntTSL 1 (best) BASIC12.26□□□□□ -0.45
CKS2P33552 ARHGAP9-201ENST00000393791 2597 ntAPPRIS P3 TSL 1 (best) BASIC12.25□□□□□ -0.45
CKS2P33552 CDH1-202ENST00000422392 2567 ntTSL 1 (best) BASIC12.25□□□□□ -0.45
CKS2P33552 GAS2L2-201ENST00000604063 2661 ntAPPRIS ALT2 TSL 5 BASIC12.25□□□□□ -0.45
CKS2P33552 ASAP1-202ENST00000518721 5507 ntAPPRIS P3 TSL 5 BASIC12.25□□□□□ -0.45
CKS2P33552 CAAP1-201ENST00000333916 2791 ntAPPRIS P1 TSL 1 (best) BASIC12.25□□□□□ -0.45
CKS2P33552 SULT1C4-201ENST00000272452 1860 ntAPPRIS P1 TSL 1 (best) BASIC12.25□□□□□ -0.45
CKS2P33552 SYT3-201ENST00000338916 2915 ntAPPRIS P1 TSL 1 (best) BASIC12.25□□□□□ -0.45
CKS2P33552 CERS6-202ENST00000392687 6851 ntAPPRIS ALT1 TSL 1 (best) BASIC12.25□□□□□ -0.45
CKS2P33552 MINDY1-202ENST00000361738 1961 ntTSL 2 BASIC12.25□□□□□ -0.45
CKS2P33552 LINC01529-205ENST00000637365 2000 ntTSL 5 BASIC12.25□□□□□ -0.45
CKS2P33552 ACSS2-202ENST00000360596 3065 ntAPPRIS P1 TSL 1 (best) BASIC12.25□□□□□ -0.45
CKS2P33552 RERE-204ENST00000400908 5790 ntAPPRIS P2 TSL 1 (best) BASIC12.25□□□□□ -0.45
CKS2P33552 SETD1B-203ENST00000604567 5969 ntAPPRIS ALT2 TSL 5 BASIC12.25□□□□□ -0.45
CKS2P33552 AGRN-201ENST00000379370 7323 ntAPPRIS P1 TSL 1 (best) BASIC12.25□□□□□ -0.45
CKS2P33552 HOGA1-202ENST00000370646 2488 ntAPPRIS P1 TSL 1 (best) BASIC12.25□□□□□ -0.45
CKS2P33552 PPM1J-202ENST00000464951 2474 ntTSL 1 (best) BASIC12.25□□□□□ -0.45
CKS2P33552 FBXO42-201ENST00000375592 6202 ntAPPRIS P1 TSL 1 (best) BASIC12.25□□□□□ -0.45
CKS2P33552 NTAN1-201ENST00000287706 1204 ntAPPRIS P1 TSL 1 (best) BASIC12.25□□□□□ -0.45
CKS2P33552 NUDT6-201ENST00000304430 1169 ntAPPRIS P1 TSL 1 (best) BASIC12.25□□□□□ -0.45
CKS2P33552 FAM182B-202ENST00000376404 456 ntAPPRIS ALT2 BASIC12.25□□□□□ -0.45
CKS2P33552 MIR1238-201ENST00000408483 83 ntBASIC12.25□□□□□ -0.45
CKS2P33552 DMKN-208ENST00000424570 1293 ntAPPRIS ALT2 TSL 1 (best) BASIC12.25□□□□□ -0.45
CKS2P33552 AC007967.3-201ENST00000434308 558 ntBASIC12.25□□□□□ -0.45
CKS2P33552 STK19B-204ENST00000512515 211 ntBASIC12.25□□□□□ -0.45
Retrieved 100 of 98,524 protein–RNA pairs in 27.1 ms