Protein–RNA interactions for Protein: O15347

HMGB3, High mobility group protein B3, humanhuman

Known RBP Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3O15347 MPP1-202ENST00000369534 2042 ntAPPRIS P1 TSL 1 (best) BASIC13.42□□□□□ -0.26
HMGB3O15347 BSG-203ENST00000353555 1616 ntTSL 1 (best) BASIC13.42□□□□□ -0.26
HMGB3O15347 RAD51-203ENST00000423169 1611 ntTSL 1 (best) BASIC13.42□□□□□ -0.26
HMGB3O15347 THNSL2-205ENST00000449349 1616 ntTSL 5 BASIC13.42□□□□□ -0.26
HMGB3O15347 SLC35F2-204ENST00000525815 3170 ntAPPRIS P2 TSL 1 (best) BASIC13.42□□□□□ -0.26
HMGB3O15347 STXBP2-202ENST00000414284 1859 ntAPPRIS ALT1 TSL 1 (best) BASIC13.42□□□□□ -0.26
HMGB3O15347 WNT5A-202ENST00000474267 6042 ntAPPRIS P1 TSL 5 BASIC13.41□□□□□ -0.26
HMGB3O15347 FAM9C-205ENST00000542843 5858 ntTSL 1 (best) BASIC13.41□□□□□ -0.26
HMGB3O15347 AQP3-201ENST00000297991 1849 ntAPPRIS P1 TSL 1 (best) BASIC13.41□□□□□ -0.26
HMGB3O15347 ZNF140-210ENST00000544426 2340 ntTSL 2 BASIC13.41□□□□□ -0.26
HMGB3O15347 P3H1-202ENST00000296388 2585 ntAPPRIS P3 TSL 1 (best) BASIC13.41□□□□□ -0.26
HMGB3O15347 RBM14-201ENST00000310137 2828 ntAPPRIS P1 TSL 1 (best) BASIC13.41□□□□□ -0.26
HMGB3O15347 SHANK2-203ENST00000409161 9208 ntTSL 1 (best) BASIC13.41□□□□□ -0.26
HMGB3O15347 CACNA2D3-202ENST00000415676 3661 ntAPPRIS ALT2 TSL 1 (best) BASIC13.41□□□□□ -0.26
HMGB3O15347 PTBP1-201ENST00000349038 3155 ntAPPRIS P3 TSL 1 (best) BASIC13.41□□□□□ -0.26
HMGB3O15347 PTBP1-204ENST00000394601 3185 ntTSL 1 (best) BASIC13.41□□□□□ -0.26
HMGB3O15347 HTR3E-201ENST00000335304 1912 ntAPPRIS P3 TSL 1 (best) BASIC13.41□□□□□ -0.26
HMGB3O15347 PAPOLA-201ENST00000216277 4519 ntAPPRIS P1 TSL 1 (best) BASIC13.41□□□□□ -0.26
HMGB3O15347 KIFC3-206ENST00000541240 3047 ntTSL 2 BASIC13.41□□□□□ -0.26
HMGB3O15347 AC010491.1-201ENST00000563101 2797 ntBASIC13.41□□□□□ -0.26
HMGB3O15347 ANXA11-203ENST00000422982 2534 ntAPPRIS P3 TSL 1 (best) BASIC13.41□□□□□ -0.26
HMGB3O15347 ZNF407-201ENST00000299687 7948 ntAPPRIS P3 TSL 1 (best) BASIC13.41□□□□□ -0.26
HMGB3O15347 MRPL15-201ENST00000260102 1147 ntAPPRIS P1 TSL 1 (best) BASIC13.41□□□□□ -0.26
HMGB3O15347 AL360181.5-201ENST00000368554 1044 ntAPPRIS P1 TSL 2 BASIC13.41□□□□□ -0.26
HMGB3O15347 MCHR1-202ENST00000381433 1219 ntTSL 1 (best) BASIC13.41□□□□□ -0.26
HMGB3O15347 TMEM185A-204ENST00000507237 903 ntTSL 2 BASIC13.41□□□□□ -0.26
HMGB3O15347 ADA-207ENST00000537820 1128 ntTSL 1 (best) BASIC13.41□□□□□ -0.26
HMGB3O15347 GSTZ1-218ENST00000557053 580 ntTSL 3 BASIC13.41□□□□□ -0.26
HMGB3O15347 AC109462.3-201ENST00000573934 613 ntBASIC13.41□□□□□ -0.26
HMGB3O15347 PAQR4-204ENST00000574988 869 ntTSL 2 BASIC13.41□□□□□ -0.26
HMGB3O15347 PSMC3IP-208ENST00000590760 664 ntTSL 1 (best) BASIC13.41□□□□□ -0.26
HMGB3O15347 DEDD2-209ENST00000598727 1037 ntTSL 1 (best) BASIC13.41□□□□□ -0.26
HMGB3O15347 SMAGP-204ENST00000603838 816 ntTSL 2 BASIC13.41□□□□□ -0.26
HMGB3O15347 TBC1D3D-201ENST00000616101 2116 ntAPPRIS P1 TSL 1 (best) BASIC13.41□□□□□ -0.26
HMGB3O15347 TBC1D3K-201ENST00000620247 2116 ntAPPRIS P1 TSL 1 (best) BASIC13.41□□□□□ -0.26
HMGB3O15347 LRRC23-215ENST00000622489 1061 ntTSL 5 BASIC13.41□□□□□ -0.26
HMGB3O15347 AL049637.2-201ENST00000641778 930 ntBASIC13.41□□□□□ -0.26
HMGB3O15347 CAPN2-201ENST00000295006 3573 ntAPPRIS P1 TSL 1 (best) BASIC13.41□□□□□ -0.26
HMGB3O15347 SLC22A12-201ENST00000336464 1854 ntTSL 1 (best) BASIC13.41□□□□□ -0.26
HMGB3O15347 CELF4-202ENST00000361795 1853 ntAPPRIS ALT1 TSL 2 BASIC13.41□□□□□ -0.26
HMGB3O15347 SH3BP2-203ENST00000442312 9211 ntAPPRIS ALT2 TSL 2 BASIC13.41□□□□□ -0.26
HMGB3O15347 MAPK10-262ENST00000641051 5738 ntBASIC13.41□□□□□ -0.26
HMGB3O15347 LGALS3BP-218ENST00000591778 1961 ntTSL 2 BASIC13.41□□□□□ -0.26
HMGB3O15347 SEMA4C-201ENST00000305476 3545 ntAPPRIS P1 TSL 1 (best) BASIC13.41□□□□□ -0.26
HMGB3O15347 SCLT1-208ENST00000506368 2096 ntAPPRIS ALT2 TSL 1 (best) BASIC13.41□□□□□ -0.26
HMGB3O15347 NFIX-209ENST00000587760 1487 ntTSL 1 (best) BASIC13.41□□□□□ -0.26
HMGB3O15347 RUNDC1-201ENST00000361677 3828 ntAPPRIS P1 TSL 1 (best) BASIC13.41□□□□□ -0.26
HMGB3O15347 AC010460.3-201ENST00000511359 1579 ntBASIC13.41□□□□□ -0.26
HMGB3O15347 ZFAND6-211ENST00000559157 1559 ntTSL 2 BASIC13.41□□□□□ -0.26
HMGB3O15347 PPP6R1-203ENST00000587283 2953 ntAPPRIS P1 TSL 1 (best) BASIC13.41□□□□□ -0.26
HMGB3O15347 ARL8B-208ENST00000611208 2981 ntAPPRIS P1 TSL 1 (best) BASIC13.41□□□□□ -0.26
HMGB3O15347 LDB3-202ENST00000361373 5297 ntAPPRIS P3 TSL 1 (best) BASIC13.41□□□□□ -0.26
HMGB3O15347 TBX4-201ENST00000240335 2470 ntAPPRIS P3 TSL 1 (best) BASIC13.4□□□□□ -0.26
HMGB3O15347 NFE2-202ENST00000435572 1762 ntAPPRIS P1 TSL 1 (best) BASIC13.4□□□□□ -0.26
HMGB3O15347 CPNE6-201ENST00000397016 2235 ntAPPRIS P1 TSL 2 BASIC13.4□□□□□ -0.26
HMGB3O15347 CPNE6-203ENST00000537691 2233 ntTSL 2 BASIC13.4□□□□□ -0.26
HMGB3O15347 GMDS-208ENST00000530927 1440 ntAPPRIS ALT2 TSL 1 (best) BASIC13.4□□□□□ -0.26
HMGB3O15347 THOC3-212ENST00000628318 1442 ntTSL 5 BASIC13.4□□□□□ -0.26
HMGB3O15347 CDH3-201ENST00000264012 4929 ntAPPRIS P1 TSL 1 (best) BASIC13.4□□□□□ -0.26
HMGB3O15347 AIFM2-204ENST00000613322 3247 ntAPPRIS P1 TSL 5 BASIC13.4□□□□□ -0.26
HMGB3O15347 SLC46A1-207ENST00000612814 6376 ntAPPRIS P1 TSL 2 BASIC13.4□□□□□ -0.26
HMGB3O15347 RABGAP1L-201ENST00000251507 2899 ntAPPRIS P1 TSL 2 BASIC13.4□□□□□ -0.26
HMGB3O15347 ANKMY1-207ENST00000403283 2874 ntTSL 1 (best) BASIC13.4□□□□□ -0.26
HMGB3O15347 SLC18A2-201ENST00000298472 3852 ntAPPRIS P1 TSL 1 (best) BASIC13.4□□□□□ -0.26
HMGB3O15347 ZNF302-207ENST00000505365 2955 ntTSL 2 BASIC13.4□□□□□ -0.26
HMGB3O15347 DOCK4-206ENST00000437633 6212 ntAPPRIS P2 TSL 1 (best) BASIC13.4□□□□□ -0.26
HMGB3O15347 RTN3-205ENST00000356000 2645 ntTSL 2 BASIC13.4□□□□□ -0.26
HMGB3O15347 ZNF662-201ENST00000328199 3186 ntAPPRIS P1 TSL 5 BASIC13.4□□□□□ -0.26
HMGB3O15347 RSBN1-201ENST00000261441 6621 ntAPPRIS P1 TSL 2 BASIC13.4□□□□□ -0.26
HMGB3O15347 CDKN1A-203ENST00000405375 2267 ntAPPRIS P1 TSL 1 (best) BASIC13.4□□□□□ -0.26
HMGB3O15347 IQCC-202ENST00000537469 2252 ntAPPRIS ALT2 TSL 1 (best) BASIC13.4□□□□□ -0.26
HMGB3O15347 MSGN1-201ENST00000281047 606 ntAPPRIS P1 BASIC13.4□□□□□ -0.26
HMGB3O15347 COX5A-201ENST00000322347 1268 ntAPPRIS P1 TSL 1 (best) BASIC13.4□□□□□ -0.26
HMGB3O15347 PRSS3-201ENST00000342836 1144 ntTSL 1 (best) BASIC13.4□□□□□ -0.26
HMGB3O15347 INS-203ENST00000397262 639 ntAPPRIS P1 TSL 1 (best) BASIC13.4□□□□□ -0.26
HMGB3O15347 PTX4-202ENST00000440447 1117 ntTSL 5 BASIC13.4□□□□□ -0.26
HMGB3O15347 MRPL2-207ENST00000487429 905 ntTSL 1 (best) BASIC13.4□□□□□ -0.26
HMGB3O15347 IGHV3-52-201ENST00000519770 353 ntBASIC13.4□□□□□ -0.26
HMGB3O15347 MTHFS-202ENST00000559722 948 ntTSL 2 BASIC13.4□□□□□ -0.26
HMGB3O15347 C2orf69P3-201ENST00000565542 1120 ntBASIC13.4□□□□□ -0.26
HMGB3O15347 ECSIT-207ENST00000588998 818 ntTSL 3 BASIC13.4□□□□□ -0.26
HMGB3O15347 AP001412.1-201ENST00000608405 714 ntBASIC13.4□□□□□ -0.26
HMGB3O15347 JADE2-211ENST00000612830 1251 ntTSL 1 (best) BASIC13.4□□□□□ -0.26
HMGB3O15347 AC091100.1-201ENST00000558424 2354 ntTSL 2 BASIC13.4□□□□□ -0.26
HMGB3O15347 IRX6-201ENST00000290552 3128 ntAPPRIS P1 TSL 1 (best) BASIC13.4□□□□□ -0.26
HMGB3O15347 FUT7-201ENST00000314412 2584 ntAPPRIS P1 TSL 1 (best) BASIC13.4□□□□□ -0.26
HMGB3O15347 PNMA6E-202ENST00000633844 2596 ntTSL 3 BASIC13.4□□□□□ -0.26
HMGB3O15347 JMJD6-208ENST00000617192 5517 ntTSL 5 BASIC13.4□□□□□ -0.26
HMGB3O15347 COL1A1-201ENST00000225964 6727 ntAPPRIS P1 TSL 1 (best) BASIC13.4□□□□□ -0.26
HMGB3O15347 DCUN1D3-201ENST00000324344 6162 ntAPPRIS P1 TSL 1 (best) BASIC13.4□□□□□ -0.26
HMGB3O15347 GINS2-201ENST00000253462 2673 ntAPPRIS P1 TSL 1 (best) BASIC13.4□□□□□ -0.26
HMGB3O15347 ABCG5-202ENST00000405322 2896 ntTSL 1 (best) BASIC13.4□□□□□ -0.26
HMGB3O15347 IER5-201ENST00000367577 4188 ntAPPRIS P1 BASIC13.4□□□□□ -0.26
HMGB3O15347 TRMT44-205ENST00000513449 1666 ntAPPRIS ALT2 TSL 1 (best) BASIC13.4□□□□□ -0.26
HMGB3O15347 CANT1-211ENST00000591773 1669 ntAPPRIS P1 TSL 1 (best) BASIC13.4□□□□□ -0.26
HMGB3O15347 NOL9-201ENST00000377705 6649 ntAPPRIS P1 TSL 1 (best) BASIC13.4□□□□□ -0.26
HMGB3O15347 TBXAS1-202ENST00000411653 1792 ntTSL 1 (best) BASIC13.4□□□□□ -0.26
HMGB3O15347 USP3-AS1-201ENST00000558831 1784 ntTSL 1 (best) BASIC13.4□□□□□ -0.26
HMGB3O15347 FLVCR1-AS1-201ENST00000356684 2525 ntTSL 2 BASIC13.4□□□□□ -0.26
HMGB3O15347 AXIN2-202ENST00000375702 2541 ntTSL 1 (best) BASIC13.4□□□□□ -0.26
Retrieved 100 of 98,524 protein–RNA pairs in 41.3 ms