Protein–RNA interactions for Protein: O00560

SDCBP, Syntenin-1, humanhuman

Predicted RBP Predictions only

Length 298 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SDCBPO00560 CHRD-201ENST00000204604 3521 ntAPPRIS P3 TSL 1 (best) BASIC14.19□□□□□ -0.14
SDCBPO00560 GHDC-201ENST00000301671 2650 ntAPPRIS P1 TSL 2 BASIC14.19□□□□□ -0.14
SDCBPO00560 FBXO4-201ENST00000281623 1682 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
SDCBPO00560 RASA4B-202ENST00000465829 2931 ntAPPRIS ALT1 TSL 1 (best) BASIC14.19□□□□□ -0.14
SDCBPO00560 WDTC1-202ENST00000361771 4275 ntAPPRIS P3 TSL 1 (best) BASIC14.19□□□□□ -0.14
SDCBPO00560 TM2D3-201ENST00000333202 1381 ntAPPRIS P4 TSL 1 (best) BASIC14.19□□□□□ -0.14
SDCBPO00560 MAGI1-216ENST00000497477 3555 ntTSL 5 BASIC14.19□□□□□ -0.14
SDCBPO00560 CACFD1-206ENST00000540581 2880 ntAPPRIS ALT2 TSL 2 BASIC14.19□□□□□ -0.14
SDCBPO00560 ELOF1-203ENST00000586683 2154 ntTSL 2 BASIC14.19□□□□□ -0.14
SDCBPO00560 EPS8L2-201ENST00000318562 3148 ntAPPRIS P2 TSL 1 (best) BASIC14.19□□□□□ -0.14
SDCBPO00560 RRBP1-204ENST00000377813 5041 ntAPPRIS ALT2 TSL 1 (best) BASIC14.19□□□□□ -0.14
SDCBPO00560 AP004609.1-201ENST00000498872 1646 ntTSL 1 (best) BASIC14.19□□□□□ -0.14
SDCBPO00560 IRAK1-204ENST00000393687 2049 ntTSL 1 (best) BASIC14.19□□□□□ -0.14
SDCBPO00560 RASA1-201ENST00000274376 3752 ntAPPRIS P3 TSL 1 (best) BASIC14.19□□□□□ -0.14
SDCBPO00560 SMAP1-201ENST00000316999 2403 ntAPPRIS P3 TSL 1 (best) BASIC14.19□□□□□ -0.14
SDCBPO00560 ZBTB17-216ENST00000537142 2511 ntTSL 2 BASIC14.18□□□□□ -0.14
SDCBPO00560 COL4A1-204ENST00000543140 2547 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
SDCBPO00560 DLG4-201ENST00000302955 3184 ntAPPRIS P3 TSL 5 BASIC14.18□□□□□ -0.14
SDCBPO00560 NUCKS1-201ENST00000367142 6496 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
SDCBPO00560 FOLH1-201ENST00000256999 2635 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
SDCBPO00560 CANT1-211ENST00000591773 1669 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
SDCBPO00560 THRA-203ENST00000450525 4895 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
SDCBPO00560 SFTPA2-201ENST00000372325 2189 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
SDCBPO00560 PPFIBP2-201ENST00000299492 3557 ntAPPRIS P3 TSL 1 (best) BASIC14.18□□□□□ -0.14
SDCBPO00560 TFPI2-201ENST00000222543 2444 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
SDCBPO00560 FTMT-201ENST00000321339 879 ntAPPRIS P1 BASIC14.18□□□□□ -0.14
SDCBPO00560 TLE1-202ENST00000376484 666 ntTSL 3 BASIC14.18□□□□□ -0.14
SDCBPO00560 WNT7B-203ENST00000410058 714 ntTSL 3 BASIC14.18□□□□□ -0.14
SDCBPO00560 FOXD3-AS1-201ENST00000418244 941 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
SDCBPO00560 AC020934.1-201ENST00000588469 739 ntTSL 3 BASIC14.18□□□□□ -0.14
SDCBPO00560 DNASE1L2-206ENST00000613572 1260 ntAPPRIS P1 TSL 5 BASIC14.18□□□□□ -0.14
SDCBPO00560 SPINK2-205ENST00000616980 677 ntTSL 5 BASIC14.18□□□□□ -0.14
SDCBPO00560 TVP23C-201ENST00000225576 1527 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
SDCBPO00560 RASL11A-201ENST00000241463 1543 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
SDCBPO00560 CTD-3080P12.3-203ENST00000514376 1757 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
SDCBPO00560 PPEF2-207ENST00000621010 1797 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
SDCBPO00560 ZSWIM8-201ENST00000398706 6062 ntTSL 2 BASIC14.18□□□□□ -0.14
SDCBPO00560 FUT3-202ENST00000458379 2024 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
SDCBPO00560 ABCB9-216ENST00000542678 6051 ntAPPRIS P2 TSL 1 (best) BASIC14.18□□□□□ -0.14
SDCBPO00560 NPL-204ENST00000367554 3027 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
SDCBPO00560 GRAMD2B-217ENST00000515200 3109 ntTSL 5 BASIC14.18□□□□□ -0.14
SDCBPO00560 C16orf70-208ENST00000569600 1353 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
SDCBPO00560 AC079776.2-201ENST00000641154 1609 ntBASIC14.18□□□□□ -0.14
SDCBPO00560 CKAP4-201ENST00000378026 3093 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
SDCBPO00560 SIGLEC7-201ENST00000305628 1469 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
SDCBPO00560 ZXDC-202ENST00000389709 3405 ntAPPRIS P4 TSL 1 (best) BASIC14.18□□□□□ -0.14
SDCBPO00560 ACOT12-201ENST00000307624 2086 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
SDCBPO00560 KLF11-201ENST00000305883 4030 ntAPPRIS P3 TSL 1 (best) BASIC14.18□□□□□ -0.14
SDCBPO00560 PRKD2-214ENST00000600194 2923 ntAPPRIS ALT2 TSL 2 BASIC14.18□□□□□ -0.14
SDCBPO00560 POM121-203ENST00000434423 3750 ntAPPRIS ALT2 TSL 5 BASIC14.18□□□□□ -0.14
SDCBPO00560 ANKRD26-201ENST00000376087 6591 ntAPPRIS P2 TSL 5 BASIC14.18□□□□□ -0.14
SDCBPO00560 SLC43A2-204ENST00000571650 3261 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
SDCBPO00560 CD9-203ENST00000382518 1556 ntAPPRIS P1 TSL 5 BASIC14.17□□□□□ -0.14
SDCBPO00560 KCNK7-203ENST00000394216 1563 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
SDCBPO00560 TNXB-209ENST00000613214 6842 ntTSL 5 BASIC14.17□□□□□ -0.14
SDCBPO00560 NFAM1-201ENST00000329021 5602 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
SDCBPO00560 RBPJ-205ENST00000355476 5990 ntAPPRIS P3 TSL 1 (best) BASIC14.17□□□□□ -0.14
SDCBPO00560 SIGLEC16-201ENST00000599858 1437 ntBASIC14.17□□□□□ -0.14
SDCBPO00560 PXN-201ENST00000228307 3785 ntAPPRIS P4 TSL 1 (best) BASIC14.17□□□□□ -0.14
SDCBPO00560 ELL-203ENST00000596124 1852 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
SDCBPO00560 ABHD10-201ENST00000273359 2590 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
SDCBPO00560 CHD4-210ENST00000544040 6514 ntAPPRIS ALT2 TSL 5 BASIC14.17□□□□□ -0.14
SDCBPO00560 ZNF382-202ENST00000423582 2657 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
SDCBPO00560 AC007495.1-201ENST00000501259 2678 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
SDCBPO00560 LRRC71-201ENST00000337428 1959 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
SDCBPO00560 DNAH14-206ENST00000400952 1984 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
SDCBPO00560 SIT1-201ENST00000259608 1231 ntAPPRIS P2 TSL 1 (best) BASIC14.17□□□□□ -0.14
SDCBPO00560 IGLL1-202ENST00000330377 901 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
SDCBPO00560 S100A14-201ENST00000344616 1058 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
SDCBPO00560 ROMO1-203ENST00000374077 422 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
SDCBPO00560 SEC61G-203ENST00000415949 732 ntAPPRIS P1 TSL 5 BASIC14.17□□□□□ -0.14
SDCBPO00560 ACTG1P4-201ENST00000425123 1122 ntBASIC14.17□□□□□ -0.14
SDCBPO00560 NUS1P1-201ENST00000446295 882 ntBASIC14.17□□□□□ -0.14
SDCBPO00560 EFCAB11-211ENST00000556609 568 ntTSL 3 BASIC14.17□□□□□ -0.14
SDCBPO00560 PRELID1P1-202ENST00000567272 903 ntBASIC14.17□□□□□ -0.14
SDCBPO00560 AC127496.4-201ENST00000571591 549 ntTSL 4 BASIC14.17□□□□□ -0.14
SDCBPO00560 CIRBP-235ENST00000591935 746 ntAPPRIS ALT1 TSL 3 BASIC14.17□□□□□ -0.14
SDCBPO00560 IGHV3OR16-7-201ENST00000604106 360 ntBASIC14.17□□□□□ -0.14
SDCBPO00560 AP001269.4-201ENST00000609611 512 ntBASIC14.17□□□□□ -0.14
SDCBPO00560 AL732292.2-201ENST00000609649 430 ntBASIC14.17□□□□□ -0.14
SDCBPO00560 TXNDC12-205ENST00000610127 806 ntTSL 2 BASIC14.17□□□□□ -0.14
SDCBPO00560 AL121772.3-201ENST00000610840 674 ntBASIC14.17□□□□□ -0.14
SDCBPO00560 ANKMY2-206ENST00000628652 1270 ntTSL 5 BASIC14.17□□□□□ -0.14
SDCBPO00560 C19orf54-201ENST00000378313 2753 ntAPPRIS P1 TSL 2 BASIC14.17□□□□□ -0.14
SDCBPO00560 PGBD5-201ENST00000391860 10961 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
SDCBPO00560 FBXO4-202ENST00000296812 1731 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
SDCBPO00560 MAIP1-202ENST00000392290 1386 ntAPPRIS P2 TSL 1 (best) BASIC14.17□□□□□ -0.14
SDCBPO00560 AC005329.3-201ENST00000626781 1366 ntTSL 5 BASIC14.17□□□□□ -0.14
SDCBPO00560 SURF4-202ENST00000371989 2984 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
SDCBPO00560 TJP2-212ENST00000636438 4689 ntAPPRIS ALT2 TSL 5 BASIC14.17□□□□□ -0.14
SDCBPO00560 ARHGEF6-202ENST00000370620 4764 ntTSL 2 BASIC14.17□□□□□ -0.14
SDCBPO00560 GSK3B-201ENST00000264235 7711 ntAPPRIS ALT1 TSL 1 (best) BASIC14.17□□□□□ -0.14
SDCBPO00560 AC141586.1-201ENST00000399702 2748 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
SDCBPO00560 CDK1-204ENST00000448257 1948 ntAPPRIS ALT1 TSL 1 (best) BASIC14.17□□□□□ -0.14
SDCBPO00560 HPCAL1-207ENST00000620771 1941 ntAPPRIS P1 TSL 2 BASIC14.17□□□□□ -0.14
SDCBPO00560 EPB41L3-202ENST00000342933 4270 ntAPPRIS ALT2 TSL 5 BASIC14.17□□□□□ -0.14
SDCBPO00560 RBPMS-204ENST00000397323 2941 ntAPPRIS P3 TSL 1 (best) BASIC14.17□□□□□ -0.14
SDCBPO00560 ZNF514-201ENST00000295208 3011 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
SDCBPO00560 LMF2-202ENST00000474879 2582 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
SDCBPO00560 C19orf68-203ENST00000614654 3588 ntAPPRIS P2 TSL 5 BASIC14.17□□□□□ -0.14
Retrieved 100 of 98,524 protein–RNA pairs in 59.5 ms