Protein–RNA interactions for Protein: Q96RY7

IFT140, Intraflagellar transport protein 140 homolog, humanhuman

Predictions only

Length 1,462 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
IFT140Q96RY7 KLF9-201ENST00000377126 5175 ntAPPRIS P1 TSL 1 (best) BASIC26.92■■□□□ 1.9
IFT140Q96RY7 RAPGEF5-203ENST00000405243 2800 ntTSL 1 (best) BASIC26.92■■□□□ 1.9
IFT140Q96RY7 SNX4-201ENST00000251775 2513 ntAPPRIS P1 TSL 1 (best) BASIC26.92■■□□□ 1.9
IFT140Q96RY7 GPS1-228ENST00000624957 1825 ntAPPRIS ALT1 TSL 5 BASIC26.92■■□□□ 1.9
IFT140Q96RY7 CORO6-210ENST00000580212 2345 ntTSL 5 BASIC26.92■■□□□ 1.9
IFT140Q96RY7 ANKS3-230ENST00000614075 2387 ntAPPRIS P1 TSL 5 BASIC26.92■■□□□ 1.9
IFT140Q96RY7 SCGN-201ENST00000334979 704 ntTSL 1 (best) BASIC26.92■■□□□ 1.9
IFT140Q96RY7 NGDN-202ENST00000408901 1143 ntAPPRIS ALT2 TSL 1 (best) BASIC26.92■■□□□ 1.9
IFT140Q96RY7 FADS2-212ENST00000522639 360 ntTSL 5 BASIC26.92■■□□□ 1.9
IFT140Q96RY7 ADM-202ENST00000524948 584 ntTSL 2 BASIC26.92■■□□□ 1.9
IFT140Q96RY7 LYSMD2-204ENST00000560491 1026 ntTSL 3 BASIC26.92■■□□□ 1.9
IFT140Q96RY7 FADS2-215ENST00000574708 385 ntTSL 3 BASIC26.92■■□□□ 1.9
IFT140Q96RY7 METTL26-214ENST00000614890 801 ntTSL 3 BASIC26.92■■□□□ 1.9
IFT140Q96RY7 AC244452.3-201ENST00000636814 210 ntBASIC26.92■■□□□ 1.9
IFT140Q96RY7 ISY1-201ENST00000273541 1704 ntTSL 1 (best) BASIC26.92■■□□□ 1.9
IFT140Q96RY7 LINC01148-201ENST00000557527 1763 ntTSL 1 (best) BASIC26.92■■□□□ 1.9
IFT140Q96RY7 GPT-202ENST00000394955 1885 ntAPPRIS P1 TSL 1 (best) BASIC26.92■■□□□ 1.9
IFT140Q96RY7 RAB38-201ENST00000243662 1465 ntAPPRIS P1 TSL 1 (best) BASIC26.91■■□□□ 1.9
IFT140Q96RY7 NTMT1-204ENST00000372486 1487 ntAPPRIS P1 TSL 5 BASIC26.91■■□□□ 1.9
IFT140Q96RY7 ZNF57-201ENST00000306908 2003 ntAPPRIS P2 TSL 1 (best) BASIC26.91■■□□□ 1.9
IFT140Q96RY7 ZNF57-205ENST00000614108 2002 ntAPPRIS ALT2 TSL 5 BASIC26.91■■□□□ 1.9
IFT140Q96RY7 GSKIP-205ENST00000555181 2218 ntAPPRIS P1 TSL 1 (best) BASIC26.91■■□□□ 1.9
IFT140Q96RY7 USE1-206ENST00000595101 1776 ntTSL 2 BASIC26.91■■□□□ 1.9
IFT140Q96RY7 PTHLH-205ENST00000535992 1891 ntAPPRIS P3 TSL 1 (best) BASIC26.91■■□□□ 1.9
IFT140Q96RY7 CCDC12-201ENST00000292314 1017 ntTSL 5 BASIC26.91■■□□□ 1.9
IFT140Q96RY7 POLR2J-201ENST00000292614 932 ntAPPRIS P1 TSL 1 (best) BASIC26.91■■□□□ 1.9
IFT140Q96RY7 PFDN5-202ENST00000334478 586 ntAPPRIS P1 TSL 1 (best) BASIC26.91■■□□□ 1.9
IFT140Q96RY7 IP6K2-202ENST00000340879 1185 ntTSL 1 (best) BASIC26.91■■□□□ 1.9
IFT140Q96RY7 HIST1H2AH-201ENST00000377459 387 ntAPPRIS P1 BASIC26.91■■□□□ 1.9
IFT140Q96RY7 MTHFSD-202ENST00000381214 1210 ntAPPRIS ALT2 TSL 1 (best) BASIC26.91■■□□□ 1.9
IFT140Q96RY7 CGB8-201ENST00000448456 882 ntAPPRIS P1 TSL 1 (best) BASIC26.91■■□□□ 1.9
IFT140Q96RY7 EIF4HP1-201ENST00000453115 687 ntBASIC26.91■■□□□ 1.9
IFT140Q96RY7 REEP1-202ENST00000453231 940 ntTSL 2 BASIC26.91■■□□□ 1.9
IFT140Q96RY7 FAM104B-207ENST00000489298 712 ntAPPRIS ALT2 TSL 2 BASIC26.91■■□□□ 1.9
IFT140Q96RY7 HIST2H2BC-201ENST00000498492 580 ntBASIC26.91■■□□□ 1.9
IFT140Q96RY7 HYAL3-206ENST00000513170 636 ntTSL 1 (best) BASIC26.91■■□□□ 1.9
IFT140Q96RY7 VASH1-AS1-201ENST00000554058 871 ntTSL 3 BASIC26.91■■□□□ 1.9
IFT140Q96RY7 AC022903.1-201ENST00000579327 469 ntTSL 2 BASIC26.91■■□□□ 1.9
IFT140Q96RY7 ADAM10-205ENST00000461408 1932 ntTSL 2 BASIC26.91■■□□□ 1.9
IFT140Q96RY7 GCDH-201ENST00000222214 1956 ntAPPRIS P1 TSL 1 (best) BASIC26.91■■□□□ 1.9
IFT140Q96RY7 TBCEL-205ENST00000529397 1375 ntAPPRIS P1 TSL 1 (best) BASIC26.91■■□□□ 1.9
IFT140Q96RY7 DIO3-201ENST00000510508 2102 ntAPPRIS P1 BASIC26.91■■□□□ 1.9
IFT140Q96RY7 PCGF6-202ENST00000369847 2230 ntAPPRIS P1 TSL 1 (best) BASIC26.91■■□□□ 1.9
IFT140Q96RY7 AP000974.1-201ENST00000623909 2387 ntBASIC26.91■■□□□ 1.9
IFT140Q96RY7 TGIF1-205ENST00000401449 1670 ntTSL 2 BASIC26.9■■□□□ 1.9
IFT140Q96RY7 KRT8-215ENST00000552150 1687 ntTSL 1 (best) BASIC26.9■■□□□ 1.9
IFT140Q96RY7 FBXL17-205ENST00000542267 5188 ntAPPRIS P1 TSL 1 (best) BASIC26.9■■□□□ 1.9
IFT140Q96RY7 PAX3-207ENST00000409551 1782 ntAPPRIS ALT1 TSL 1 (best) BASIC26.9■■□□□ 1.9
IFT140Q96RY7 DIP2A-203ENST00000435722 2760 ntTSL 2 BASIC26.9■■□□□ 1.9
IFT140Q96RY7 AES-201ENST00000221561 1884 ntTSL 1 (best) BASIC26.9■■□□□ 1.9
IFT140Q96RY7 TMEM25-202ENST00000354064 1965 ntTSL 2 BASIC26.9■■□□□ 1.9
IFT140Q96RY7 FOXD4L4-201ENST00000377413 2230 ntAPPRIS P1 BASIC26.9■■□□□ 1.9
IFT140Q96RY7 GMDS-AS1-201ENST00000456943 2308 ntTSL 2 BASIC26.9■■□□□ 1.9
IFT140Q96RY7 IGHV3-21-201ENST00000390607 430 ntAPPRIS P1 BASIC26.9■■□□□ 1.9
IFT140Q96RY7 AL583835.2-202ENST00000421363 1104 ntTSL 1 (best) BASIC26.9■■□□□ 1.9
IFT140Q96RY7 AL157392.3-216ENST00000437446 462 ntTSL 3 BASIC26.9■■□□□ 1.9
IFT140Q96RY7 AC129492.3-201ENST00000498285 460 ntAPPRIS P1 TSL 4 BASIC26.9■■□□□ 1.9
IFT140Q96RY7 ZNFX1-AS1_1.1-201ENST00000615787 198 ntBASIC26.9■■□□□ 1.9
IFT140Q96RY7 CLDND1-215ENST00000507874 1380 ntTSL 3 BASIC26.9■■□□□ 1.9
IFT140Q96RY7 COPS3-212ENST00000539941 1699 ntTSL 2 BASIC26.9■■□□□ 1.9
IFT140Q96RY7 CT62-201ENST00000449977 1825 ntAPPRIS P2 TSL 1 (best) BASIC26.9■■□□□ 1.9
IFT140Q96RY7 MAGEA2-201ENST00000595583 1830 ntAPPRIS P1 TSL 1 (best) BASIC26.9■■□□□ 1.9
IFT140Q96RY7 NPEPL1-204ENST00000525967 1917 ntTSL 1 (best) BASIC26.9■■□□□ 1.9
IFT140Q96RY7 TP73-204ENST00000378280 2062 ntTSL 1 (best) BASIC26.9■■□□□ 1.9
IFT140Q96RY7 UBE2I-203ENST00000397514 2976 ntAPPRIS P1 TSL 1 (best) BASIC26.9■■□□□ 1.9
IFT140Q96RY7 MRPL55-201ENST00000295008 632 ntAPPRIS P1 TSL 2 BASIC26.89■■□□□ 1.9
IFT140Q96RY7 SLC25A26-201ENST00000336733 1023 ntTSL 1 (best) BASIC26.89■■□□□ 1.9
IFT140Q96RY7 PALM-202ENST00000338448 2725 ntAPPRIS P4 TSL 1 (best) BASIC26.89■■□□□ 1.9
IFT140Q96RY7 OPN3-201ENST00000366554 2620 ntAPPRIS P1 TSL 1 (best) BASIC26.89■■□□□ 1.9
IFT140Q96RY7 STK32C-204ENST00000368622 2010 ntTSL 1 (best) BASIC26.89■■□□□ 1.9
IFT140Q96RY7 AL662890.1-201ENST00000396818 632 ntBASIC26.89■■□□□ 1.9
IFT140Q96RY7 MEMO1-204ENST00000407893 682 ntTSL 5 BASIC26.89■■□□□ 1.9
IFT140Q96RY7 TOMM22P5-201ENST00000416399 439 ntBASIC26.89■■□□□ 1.9
IFT140Q96RY7 PDE6B-202ENST00000429163 2120 ntTSL 2 BASIC26.89■■□□□ 1.9
IFT140Q96RY7 LDHBP1-201ENST00000455730 1119 ntBASIC26.89■■□□□ 1.9
IFT140Q96RY7 TRIM17-205ENST00000456946 1731 ntTSL 1 (best) BASIC26.89■■□□□ 1.9
IFT140Q96RY7 AC093433.1-201ENST00000458048 571 ntBASIC26.89■■□□□ 1.9
IFT140Q96RY7 AC022137.2-201ENST00000503482 481 ntBASIC26.89■■□□□ 1.9
IFT140Q96RY7 AC021491.2-201ENST00000513017 607 ntTSL 3 BASIC26.89■■□□□ 1.9
IFT140Q96RY7 RERG-205ENST00000537647 935 ntTSL 2 BASIC26.89■■□□□ 1.9
IFT140Q96RY7 AC068152.1-201ENST00000575930 685 ntTSL 5 BASIC26.89■■□□□ 1.9
IFT140Q96RY7 AC008736.2-201ENST00000587554 516 ntTSL 2 BASIC26.89■■□□□ 1.9
IFT140Q96RY7 PCMTD2-207ENST00000609372 1321 ntTSL 4 BASIC26.89■■□□□ 1.9
IFT140Q96RY7 TSC22D3-203ENST00000372383 2266 ntTSL 2 BASIC26.89■■□□□ 1.89
IFT140Q96RY7 PITX2-204ENST00000394595 1693 ntTSL 5 BASIC26.89■■□□□ 1.89
IFT140Q96RY7 SLURP2-201ENST00000317543 599 ntAPPRIS P1 TSL 1 (best) BASIC26.88■■□□□ 1.89
IFT140Q96RY7 CTNNBIP1-202ENST00000377258 852 ntAPPRIS P1 TSL 3 BASIC26.88■■□□□ 1.89
IFT140Q96RY7 BRF1-202ENST00000379932 884 ntTSL 5 BASIC26.88■■□□□ 1.89
IFT140Q96RY7 RAB30-AS1-207ENST00000533708 825 ntTSL 2 BASIC26.88■■□□□ 1.89
IFT140Q96RY7 MIR3619-201ENST00000579667 83 ntBASIC26.88■■□□□ 1.89
IFT140Q96RY7 RBBP7-203ENST00000380087 2333 ntAPPRIS P1 TSL 1 (best) BASIC26.88■■□□□ 1.89
IFT140Q96RY7 HS3ST4-201ENST00000331351 3203 ntAPPRIS P1 TSL 1 (best) BASIC26.88■■□□□ 1.89
IFT140Q96RY7 RNF7-201ENST00000273480 2763 ntAPPRIS P1 TSL 1 (best) BASIC26.88■■□□□ 1.89
IFT140Q96RY7 AC003002.1-202ENST00000596755 1743 ntAPPRIS P1 BASIC26.88■■□□□ 1.89
IFT140Q96RY7 AC069544.2-201ENST00000640019 2528 ntAPPRIS P1 TSL 1 (best) BASIC26.88■■□□□ 1.89
IFT140Q96RY7 PACS1-209ENST00000529757 1688 ntAPPRIS ALT2 TSL 1 (best) BASIC26.88■■□□□ 1.89
IFT140Q96RY7 VAV3-202ENST00000370056 4990 ntAPPRIS P1 TSL 1 (best) BASIC26.88■■□□□ 1.89
IFT140Q96RY7 B4GALT4-216ENST00000483209 2494 ntAPPRIS P1 TSL 1 (best) BASIC26.88■■□□□ 1.89
IFT140Q96RY7 IGFBP4-201ENST00000269593 2200 ntAPPRIS P1 TSL 1 (best) BASIC26.88■■□□□ 1.89
IFT140Q96RY7 FGFBP1-201ENST00000382333 1359 ntAPPRIS P1 TSL 3 BASIC26.88■■□□□ 1.89
Retrieved 100 of 98,524 protein–RNA pairs in 63.8 ms