Protein–RNA interactions for Protein: P41235

HNF4A, Hepatocyte nuclear factor 4-alpha, humanhuman

Predictions only

Length 474 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HNF4AP41235 AC062028.1-203ENST00000447433 1472 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
HNF4AP41235 TERT-202ENST00000334602 3210 ntAPPRIS ALT2 TSL 1 (best) BASIC16.18■□□□□ 0.18
HNF4AP41235 CHRNE-201ENST00000293780 2455 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
HNF4AP41235 CENPN-202ENST00000305850 2481 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
HNF4AP41235 ABHD15-201ENST00000307201 3592 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
HNF4AP41235 RGS6-210ENST00000553530 5685 ntAPPRIS P3 TSL 1 (best) BASIC16.18■□□□□ 0.18
HNF4AP41235 PCDHB19P-201ENST00000570871 2371 ntBASIC16.18■□□□□ 0.18
HNF4AP41235 GRHPR-201ENST00000318158 1280 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
HNF4AP41235 GUK1-203ENST00000366718 1275 ntAPPRIS P3 TSL 3 BASIC16.18■□□□□ 0.18
HNF4AP41235 HCG4-201ENST00000418983 998 ntBASIC16.18■□□□□ 0.18
HNF4AP41235 CD99L2-206ENST00000466436 988 ntAPPRIS P4 TSL 1 (best) BASIC16.18■□□□□ 0.18
HNF4AP41235 AP006621.3-203ENST00000525941 610 ntTSL 2 BASIC16.18■□□□□ 0.18
HNF4AP41235 SLC25A1P1-201ENST00000528351 927 ntBASIC16.18■□□□□ 0.18
HNF4AP41235 TRMT112-203ENST00000535750 823 ntTSL 2 BASIC16.18■□□□□ 0.18
HNF4AP41235 AC087641.1-201ENST00000557561 1021 ntBASIC16.18■□□□□ 0.18
HNF4AP41235 OAZ1-202ENST00000582888 969 ntAPPRIS ALT1 TSL 5 BASIC16.18■□□□□ 0.18
HNF4AP41235 HEXIM2-207ENST00000592695 1246 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
HNF4AP41235 BABAM1-206ENST00000595632 966 ntAPPRIS ALT2 TSL 5 BASIC16.18■□□□□ 0.18
HNF4AP41235 MAGIX-204ENST00000614074 778 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
HNF4AP41235 HMGN3-203ENST00000620514 1010 ntTSL 3 BASIC16.18■□□□□ 0.18
HNF4AP41235 MITF-204ENST00000352241 4814 ntAPPRIS ALT1 TSL 1 (best) BASIC16.18■□□□□ 0.18
HNF4AP41235 TCP10L2-202ENST00000366832 2185 ntAPPRIS P2 TSL 1 (best) BASIC16.18■□□□□ 0.18
HNF4AP41235 HS6ST2-204ENST00000521489 2607 ntTSL 5 BASIC16.18■□□□□ 0.18
HNF4AP41235 PDE9A-205ENST00000349112 1616 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
HNF4AP41235 CNPPD1-201ENST00000360507 2060 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
HNF4AP41235 CCDC43-202ENST00000457422 2058 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
HNF4AP41235 NFIX-214ENST00000592199 1509 ntTSL 5 BASIC16.18■□□□□ 0.18
HNF4AP41235 SSPN-201ENST00000242729 2788 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
HNF4AP41235 ITSN1-209ENST00000399352 5408 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
HNF4AP41235 SNX33P1-201ENST00000592116 1762 ntBASIC16.18■□□□□ 0.18
HNF4AP41235 NBPF15-202ENST00000488031 4535 ntAPPRIS P1 TSL 5 BASIC16.18■□□□□ 0.18
HNF4AP41235 RCAN3-202ENST00000374395 6802 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
HNF4AP41235 KIF25-201ENST00000351261 1326 ntTSL 5 BASIC16.18■□□□□ 0.18
HNF4AP41235 MAPK8IP1-202ENST00000395629 3180 ntTSL 5 BASIC16.18■□□□□ 0.18
HNF4AP41235 DAGLB-204ENST00000436575 2385 ntTSL 2 BASIC16.18■□□□□ 0.18
HNF4AP41235 NGFR-201ENST00000172229 3417 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
HNF4AP41235 FMNL3-202ENST00000352151 4006 ntAPPRIS P3 TSL 2 BASIC16.17■□□□□ 0.18
HNF4AP41235 PDE1C-201ENST00000321453 2898 ntAPPRIS ALT1 TSL 2 BASIC16.17■□□□□ 0.18
HNF4AP41235 SLC29A2-202ENST00000357440 2514 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
HNF4AP41235 SLC29A2-205ENST00000544554 2505 ntAPPRIS P1 TSL 2 BASIC16.17■□□□□ 0.18
HNF4AP41235 RTL6-201ENST00000341255 5495 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
HNF4AP41235 PIGT-221ENST00000638594 1835 ntTSL 5 BASIC16.17■□□□□ 0.18
HNF4AP41235 SUSD4-202ENST00000343846 3480 ntAPPRIS P1 TSL 2 BASIC16.17■□□□□ 0.18
HNF4AP41235 WDR4-201ENST00000330317 1471 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
HNF4AP41235 PKD1L2-209ENST00000531391 1488 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
HNF4AP41235 TBC1D28-201ENST00000345096 2789 ntAPPRIS P1 TSL 2 BASIC16.17■□□□□ 0.18
HNF4AP41235 SLC9A5-201ENST00000299798 3736 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
HNF4AP41235 FAM227A-201ENST00000355830 2417 ntAPPRIS P5 TSL 5 BASIC16.17■□□□□ 0.18
HNF4AP41235 AIDA-201ENST00000340020 3008 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
HNF4AP41235 TMC7-201ENST00000304381 3640 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
HNF4AP41235 FBXO4-202ENST00000296812 1731 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
HNF4AP41235 HMGN1-204ENST00000380749 1383 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
HNF4AP41235 YIF1B-203ENST00000339413 1225 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
HNF4AP41235 MCFD2-205ENST00000409218 648 ntAPPRIS P1 TSL 2 BASIC16.17■□□□□ 0.18
HNF4AP41235 PMS2P1-201ENST00000431037 1228 ntBASIC16.17■□□□□ 0.18
HNF4AP41235 AC034213.1-201ENST00000507681 806 ntTSL 3 BASIC16.17■□□□□ 0.18
HNF4AP41235 AL049869.3-201ENST00000554918 558 ntTSL 3 BASIC16.17■□□□□ 0.18
HNF4AP41235 CYP2A7P1-201ENST00000595391 815 ntBASIC16.17■□□□□ 0.18
HNF4AP41235 AC008878.2-201ENST00000601870 942 ntAPPRIS P1 TSL 4 BASIC16.17■□□□□ 0.18
HNF4AP41235 Z83851.2-201ENST00000609564 659 ntBASIC16.17■□□□□ 0.18
HNF4AP41235 TBC1D9B-202ENST00000356834 5173 ntAPPRIS ALT2 TSL 1 (best) BASIC16.17■□□□□ 0.18
HNF4AP41235 TSPAN17-209ENST00000515708 2361 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
HNF4AP41235 TMEM19-201ENST00000266673 5656 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
HNF4AP41235 SFXN1-201ENST00000321442 4231 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
HNF4AP41235 NRIP1-203ENST00000400202 7671 ntAPPRIS P1 TSL 5 BASIC16.17■□□□□ 0.18
HNF4AP41235 NF1-211ENST00000487476 2265 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
HNF4AP41235 ATG5-210ENST00000636437 2261 ntTSL 5 BASIC16.17■□□□□ 0.18
HNF4AP41235 GRAMD1A-202ENST00000411896 2523 ntAPPRIS ALT2 TSL 2 BASIC16.17■□□□□ 0.18
HNF4AP41235 CBX3P2-201ENST00000579647 1429 ntTSL 2 BASIC16.17■□□□□ 0.18
HNF4AP41235 FBXO4-201ENST00000281623 1682 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
HNF4AP41235 KRT35-202ENST00000393989 1670 ntAPPRIS P1 TSL 5 BASIC16.17■□□□□ 0.18
HNF4AP41235 SLC22A20-204ENST00000530038 1673 ntBASIC16.17■□□□□ 0.18
HNF4AP41235 IGHM-202ENST00000637539 1683 ntAPPRIS P5 BASIC16.17■□□□□ 0.18
HNF4AP41235 SLC3A2-203ENST00000377890 2161 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
HNF4AP41235 C2orf81-206ENST00000640868 2407 ntAPPRIS ALT2 BASIC16.17■□□□□ 0.18
HNF4AP41235 CHST10-201ENST00000264249 2842 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
HNF4AP41235 FMNL1-201ENST00000328118 2330 ntTSL 2 BASIC16.17■□□□□ 0.18
HNF4AP41235 EDC3-202ENST00000426797 2093 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
HNF4AP41235 CES4A-206ENST00000540579 1825 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
HNF4AP41235 AC073957.2-201ENST00000549241 1562 ntTSL 4 BASIC16.17■□□□□ 0.18
HNF4AP41235 DHRS7-212ENST00000611054 1321 ntTSL 5 BASIC16.17■□□□□ 0.18
HNF4AP41235 WDR81-202ENST00000409644 6733 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
HNF4AP41235 HDAC8-206ENST00000373571 2133 ntTSL 5 BASIC16.16■□□□□ 0.18
HNF4AP41235 B4GALNT4-201ENST00000329962 3444 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
HNF4AP41235 NAT9-210ENST00000580301 1860 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
HNF4AP41235 AL139300.1-201ENST00000472726 2505 ntAPPRIS P1 TSL 2 BASIC16.16■□□□□ 0.18
HNF4AP41235 RGN-203ENST00000397180 2257 ntAPPRIS P1 TSL 5 BASIC16.16■□□□□ 0.18
HNF4AP41235 STK32C-204ENST00000368622 2010 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
HNF4AP41235 AC093627.6-201ENST00000478759 1365 ntTSL 5 BASIC16.16■□□□□ 0.18
HNF4AP41235 PPP4R3A-205ENST00000554684 4108 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
HNF4AP41235 PAX3-207ENST00000409551 1782 ntAPPRIS ALT1 TSL 1 (best) BASIC16.16■□□□□ 0.18
HNF4AP41235 CHAD-203ENST00000508540 1789 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
HNF4AP41235 RSRP1-201ENST00000243189 1502 ntAPPRIS P2 TSL 1 (best) BASIC16.16■□□□□ 0.18
HNF4AP41235 CDK1-204ENST00000448257 1948 ntAPPRIS ALT1 TSL 1 (best) BASIC16.16■□□□□ 0.18
HNF4AP41235 ZNF133-204ENST00000396026 2717 ntAPPRIS P3 TSL 3 BASIC16.16■□□□□ 0.18
HNF4AP41235 ATP5S-201ENST00000245448 1671 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
HNF4AP41235 CPSF4-201ENST00000292476 1691 ntAPPRIS P3 TSL 1 (best) BASIC16.16■□□□□ 0.18
HNF4AP41235 SLC2A8-201ENST00000373352 914 ntTSL 2 BASIC16.16■□□□□ 0.18
HNF4AP41235 ZNF789-202ENST00000379724 510 ntTSL 2 BASIC16.16■□□□□ 0.18
HNF4AP41235 HUS1B-201ENST00000380907 1025 ntAPPRIS P1 BASIC16.16■□□□□ 0.18
Retrieved 100 of 98,524 protein–RNA pairs in 50.2 ms