Protein–RNA interactions for Protein: Q06546

GABPA, GA-binding protein alpha chain, humanhuman

Predictions only

Length 454 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
GABPAQ06546 DDX42-202ENST00000389924 3939 ntAPPRIS P1 TSL 5 BASIC19.42■□□□□ 0.7
GABPAQ06546 AC078925.2-201ENST00000624013 1973 ntBASIC19.42■□□□□ 0.7
GABPAQ06546 BAZ1A-203ENST00000382422 5775 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
GABPAQ06546 FAHD2B-202ENST00000414820 1388 ntAPPRIS P1 TSL 5 BASIC19.42■□□□□ 0.7
GABPAQ06546 GABARAPL1-205ENST00000539170 1700 ntTSL 3 BASIC19.42■□□□□ 0.7
GABPAQ06546 RABEP2-202ENST00000358201 2821 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
GABPAQ06546 KREMEN1-203ENST00000407188 1422 ntAPPRIS ALT2 TSL 1 (best) BASIC19.42■□□□□ 0.7
GABPAQ06546 EML3-217ENST00000531557 2509 ntTSL 5 BASIC19.42■□□□□ 0.7
GABPAQ06546 LETM1P2-201ENST00000597330 2178 ntBASIC19.42■□□□□ 0.7
GABPAQ06546 COTL1-201ENST00000262428 1843 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
GABPAQ06546 CRMP1-202ENST00000397890 2911 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
GABPAQ06546 DNM1-216ENST00000634267 2909 ntTSL 5 BASIC19.41■□□□□ 0.7
GABPAQ06546 REPIN1-203ENST00000444957 2969 ntAPPRIS P3 TSL 1 (best) BASIC19.41■□□□□ 0.7
GABPAQ06546 NEURL1B-201ENST00000369800 6424 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
GABPAQ06546 IGSF8-201ENST00000314485 2343 ntAPPRIS P2 TSL 1 (best) BASIC19.41■□□□□ 0.7
GABPAQ06546 FAM109A-204ENST00000548163 2317 ntAPPRIS P3 TSL 2 BASIC19.41■□□□□ 0.7
GABPAQ06546 VSIG10L2-202ENST00000638636 2304 ntAPPRIS P1 TSL 5 BASIC19.41■□□□□ 0.7
GABPAQ06546 SNAI3-AS1-202ENST00000563475 2081 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
GABPAQ06546 CCDC183-201ENST00000338005 1671 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
GABPAQ06546 JTB-201ENST00000271843 1287 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
GABPAQ06546 CD8B-201ENST00000331469 832 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
GABPAQ06546 XAGE1A-203ENST00000375602 614 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
GABPAQ06546 XAGE1B-203ENST00000375616 614 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
GABPAQ06546 AL035633.1-201ENST00000406139 838 ntBASIC19.41■□□□□ 0.7
GABPAQ06546 AL353597.1-201ENST00000414875 998 ntTSL 5 BASIC19.41■□□□□ 0.7
GABPAQ06546 AC007405.3-202ENST00000426475 660 ntTSL 3 BASIC19.41■□□□□ 0.7
GABPAQ06546 U52111.1-201ENST00000434284 914 ntTSL 3 BASIC19.41■□□□□ 0.7
GABPAQ06546 TSC22D3-213ENST00000506081 956 ntTSL 5 BASIC19.41■□□□□ 0.7
GABPAQ06546 MTFR1L-218ENST00000526894 733 ntTSL 4 BASIC19.41■□□□□ 0.7
GABPAQ06546 TATDN3-212ENST00000530441 492 ntTSL 3 BASIC19.41■□□□□ 0.7
GABPAQ06546 CSRP2-202ENST00000546966 754 ntAPPRIS P1 TSL 3 BASIC19.41■□□□□ 0.7
GABPAQ06546 AL162231.3-201ENST00000556278 902 ntAPPRIS P1 TSL 5 BASIC19.41■□□□□ 0.7
GABPAQ06546 PFN1-203ENST00000574872 1173 ntTSL 2 BASIC19.41■□□□□ 0.7
GABPAQ06546 AC010735.2-201ENST00000607970 584 ntTSL 4 BASIC19.41■□□□□ 0.7
GABPAQ06546 AC073592.8-201ENST00000624126 511 ntBASIC19.41■□□□□ 0.7
GABPAQ06546 PHKA2-201ENST00000379942 5559 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
GABPAQ06546 ARCN1-203ENST00000392859 1709 ntTSL 2 BASIC19.41■□□□□ 0.7
GABPAQ06546 SPRED3-201ENST00000338502 4778 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
GABPAQ06546 FZR1-203ENST00000441788 5212 ntAPPRIS P3 TSL 1 (best) BASIC19.41■□□□□ 0.7
GABPAQ06546 TRAPPC3-210ENST00000617904 1305 ntTSL 2 BASIC19.41■□□□□ 0.7
GABPAQ06546 CDC73-201ENST00000367435 4969 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
GABPAQ06546 CLCF1-201ENST00000312438 1844 ntAPPRIS P3 TSL 1 (best) BASIC19.41■□□□□ 0.7
GABPAQ06546 GPS1-226ENST00000623691 1839 ntAPPRIS ALT1 TSL 5 BASIC19.41■□□□□ 0.7
GABPAQ06546 ARL6IP6-201ENST00000326446 2805 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
GABPAQ06546 RNF216P1-203ENST00000404404 2427 ntBASIC19.41■□□□□ 0.7
GABPAQ06546 EIF4H-201ENST00000265753 2679 ntAPPRIS P4 TSL 2 BASIC19.4■□□□□ 0.7
GABPAQ06546 CDC25A-201ENST00000302506 3783 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
GABPAQ06546 PODNL1-202ENST00000339560 2165 ntAPPRIS P3 TSL 1 (best) BASIC19.4■□□□□ 0.7
GABPAQ06546 SLC41A3-203ENST00000360370 2169 ntAPPRIS ALT2 TSL 1 (best) BASIC19.4■□□□□ 0.7
GABPAQ06546 PITPNM2-AS1-201ENST00000506255 2191 ntTSL 2 BASIC19.4■□□□□ 0.7
GABPAQ06546 CHST11-205ENST00000549260 5696 ntAPPRIS ALT1 TSL 1 (best) BASIC19.4■□□□□ 0.7
GABPAQ06546 PPP1R16A-202ENST00000435887 2273 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
GABPAQ06546 CBX2-202ENST00000310942 4644 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
GABPAQ06546 TTC8-202ENST00000345383 2329 ntTSL 5 BASIC19.4■□□□□ 0.7
GABPAQ06546 NT5C3A-204ENST00000405342 1759 ntAPPRIS P3 TSL 1 (best) BASIC19.4■□□□□ 0.7
GABPAQ06546 RTN4-204ENST00000357732 2390 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
GABPAQ06546 SCP2-201ENST00000371509 1889 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
GABPAQ06546 MAPK8IP3-201ENST00000250894 5661 ntAPPRIS P3 TSL 1 (best) BASIC19.4■□□□□ 0.7
GABPAQ06546 USE1-201ENST00000263897 843 ntAPPRIS P2 TSL 1 (best) BASIC19.4■□□□□ 0.7
GABPAQ06546 POLR1C-201ENST00000304004 1280 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
GABPAQ06546 DBNDD2-205ENST00000372717 1207 ntTSL 5 BASIC19.4■□□□□ 0.7
GABPAQ06546 SNHG11-207ENST00000434729 1058 ntTSL 4 BASIC19.4■□□□□ 0.7
GABPAQ06546 PSMB5-204ENST00000460922 729 ntTSL 2 BASIC19.4■□□□□ 0.7
GABPAQ06546 LHX6-205ENST00000464484 666 ntTSL 2 BASIC19.4■□□□□ 0.7
GABPAQ06546 AC002310.2-201ENST00000486926 950 ntTSL 2 BASIC19.4■□□□□ 0.7
GABPAQ06546 GREM1-201ENST00000560677 623 ntTSL 4 BASIC19.4■□□□□ 0.7
GABPAQ06546 AC087741.1-203ENST00000576824 820 ntTSL 3 BASIC19.4■□□□□ 0.7
GABPAQ06546 IFT20-215ENST00000585313 852 ntAPPRIS P4 TSL 3 BASIC19.4■□□□□ 0.7
GABPAQ06546 AC067852.1-201ENST00000585572 594 ntTSL 4 BASIC19.4■□□□□ 0.7
GABPAQ06546 AC092070.4-201ENST00000599803 507 ntTSL 5 BASIC19.4■□□□□ 0.7
GABPAQ06546 AL138828.2-201ENST00000615812 383 ntBASIC19.4■□□□□ 0.7
GABPAQ06546 AL590560.3-201ENST00000623350 461 ntBASIC19.4■□□□□ 0.7
GABPAQ06546 ATP2A2-201ENST00000308664 4453 ntAPPRIS ALT1 TSL 1 (best) BASIC19.4■□□□□ 0.7
GABPAQ06546 RBBP7-204ENST00000404022 1904 ntTSL 5 BASIC19.4■□□□□ 0.7
GABPAQ06546 DHRS4L2-205ENST00000543805 1334 ntTSL 5 BASIC19.4■□□□□ 0.7
GABPAQ06546 HNF1A-212ENST00000544413 2014 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
GABPAQ06546 TM2D3-207ENST00000559107 1353 ntTSL 3 BASIC19.4■□□□□ 0.7
GABPAQ06546 TMTC4-203ENST00000376234 3483 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
GABPAQ06546 VPS37A-201ENST00000324849 4906 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
GABPAQ06546 REPS2-201ENST00000303843 7771 ntAPPRIS ALT2 TSL 1 (best) BASIC19.4■□□□□ 0.7
GABPAQ06546 PARP6-220ENST00000569795 2855 ntAPPRIS P1 TSL 5 BASIC19.4■□□□□ 0.7
GABPAQ06546 ASIC3-203ENST00000357922 2232 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
GABPAQ06546 DVL2-201ENST00000005340 3018 ntAPPRIS P2 TSL 1 (best) BASIC19.4■□□□□ 0.7
GABPAQ06546 NFIX-214ENST00000592199 1509 ntTSL 5 BASIC19.4■□□□□ 0.7
GABPAQ06546 AL589702.1-201ENST00000641229 1509 ntBASIC19.4■□□□□ 0.7
GABPAQ06546 RBM47-212ENST00000514014 2419 ntTSL 2 BASIC19.4■□□□□ 0.7
GABPAQ06546 GLMP-201ENST00000362007 1604 ntAPPRIS P3 TSL 1 (best) BASIC19.4■□□□□ 0.7
GABPAQ06546 DIAPH1-201ENST00000253811 5789 ntAPPRIS ALT2 TSL 5 BASIC19.4■□□□□ 0.7
GABPAQ06546 DIAPH1-202ENST00000389054 5795 ntAPPRIS P4 TSL 5 BASIC19.4■□□□□ 0.7
GABPAQ06546 DIAPH1-204ENST00000398557 5789 ntAPPRIS ALT2 TSL 5 BASIC19.4■□□□□ 0.7
GABPAQ06546 INPP4A-205ENST00000409851 3365 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
GABPAQ06546 PLEKHA8P1-201ENST00000256692 1839 ntTSL 1 (best) BASIC19.39■□□□□ 0.7
GABPAQ06546 HHIPL1-201ENST00000330710 7390 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.7
GABPAQ06546 KLHDC3-202ENST00000326974 1909 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.7
GABPAQ06546 MOCS1-206ENST00000425303 1920 ntTSL 2 BASIC19.39■□□□□ 0.7
GABPAQ06546 PLEKHG6-203ENST00000396988 2963 ntAPPRIS P1 TSL 2 BASIC19.39■□□□□ 0.7
GABPAQ06546 GSKIP-205ENST00000555181 2218 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
GABPAQ06546 ANKRD29-208ENST00000592179 3361 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
GABPAQ06546 SPC24-206ENST00000592540 2315 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
GABPAQ06546 CAPN15-201ENST00000219611 4744 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
Retrieved 100 of 98,524 protein–RNA pairs in 29.1 ms