Protein–RNA interactions for Protein: Q70EL1

USP54, Inactive ubiquitin carboxyl-terminal hydrolase 54, humanhuman

Predictions only

Length 1,684 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP54Q70EL1 AC011551.1-201ENST00000614101 683 ntBASIC32.53■■■□□ 2.8
USP54Q70EL1 AC021242.3-201ENST00000607598 1377 ntBASIC32.52■■■□□ 2.8
USP54Q70EL1 REEP6-201ENST00000233596 1794 ntAPPRIS P2 TSL 1 (best) BASIC32.52■■■□□ 2.8
USP54Q70EL1 AP004609.3-201ENST00000610705 1884 ntBASIC32.52■■■□□ 2.8
USP54Q70EL1 SH2B1-205ENST00000538342 1532 ntTSL 2 BASIC32.52■■■□□ 2.8
USP54Q70EL1 MNX1-201ENST00000252971 2174 ntAPPRIS P3 TSL 1 (best) BASIC32.52■■■□□ 2.8
USP54Q70EL1 RINL-208ENST00000598904 1846 ntAPPRIS P3 TSL 5 BASIC32.52■■■□□ 2.8
USP54Q70EL1 TST-201ENST00000249042 1211 ntAPPRIS P1 TSL 1 (best) BASIC32.52■■■□□ 2.8
USP54Q70EL1 AC120024.1-201ENST00000562672 995 ntBASIC32.52■■■□□ 2.8
USP54Q70EL1 LSM7-203ENST00000585409 512 ntTSL 2 BASIC32.52■■■□□ 2.8
USP54Q70EL1 EVA1C-203ENST00000401402 1558 ntTSL 5 BASIC32.52■■■□□ 2.8
USP54Q70EL1 NRM-201ENST00000259953 1755 ntAPPRIS P2 TSL 2 BASIC32.52■■■□□ 2.8
USP54Q70EL1 NDUFA10-204ENST00000407129 699 ntTSL 1 (best) BASIC32.51■■■□□ 2.79
USP54Q70EL1 PQLC1-202ENST00000357575 2475 ntAPPRIS ALT1 TSL 5 BASIC32.51■■■□□ 2.79
USP54Q70EL1 AL022341.2-201ENST00000573609 1417 ntTSL 3 BASIC32.51■■■□□ 2.79
USP54Q70EL1 NRG2-203ENST00000340391 1944 ntTSL 5 BASIC32.5■■■□□ 2.79
USP54Q70EL1 SUMF1-205ENST00000458465 1102 ntTSL 2 BASIC32.5■■■□□ 2.79
USP54Q70EL1 COL13A1-213ENST00000520267 2276 ntAPPRIS ALT2 TSL 5 BASIC32.5■■■□□ 2.79
USP54Q70EL1 VAX1-202ENST00000369206 1723 ntAPPRIS P1 TSL 5 BASIC32.5■■■□□ 2.79
USP54Q70EL1 UCK1-204ENST00000372215 2167 ntAPPRIS P1 TSL 1 (best) BASIC32.5■■■□□ 2.79
USP54Q70EL1 HMX2-201ENST00000339992 1628 ntAPPRIS P1 TSL 1 (best) BASIC32.5■■■□□ 2.79
USP54Q70EL1 ACAA1-220ENST00000627515 1862 ntTSL 5 BASIC32.5■■■□□ 2.79
USP54Q70EL1 SMARCD3-203ENST00000392811 2018 ntTSL 1 (best) BASIC32.5■■■□□ 2.79
USP54Q70EL1 HMG20B-202ENST00000333651 1596 ntAPPRIS P1 TSL 1 (best) BASIC32.5■■■□□ 2.79
USP54Q70EL1 C14orf80-211ENST00000450383 1107 ntAPPRIS ALT2 TSL 5 BASIC32.5■■■□□ 2.79
USP54Q70EL1 CTU1-201ENST00000421832 2087 ntAPPRIS P1 TSL 2 BASIC32.49■■■□□ 2.79
USP54Q70EL1 HTRA2-202ENST00000352222 1450 ntTSL 1 (best) BASIC32.49■■■□□ 2.79
USP54Q70EL1 AC092849.1-201ENST00000475250 303 ntTSL 4 BASIC32.49■■■□□ 2.79
USP54Q70EL1 DUSP22-201ENST00000344450 1485 ntTSL 1 (best) BASIC32.48■■■□□ 2.79
USP54Q70EL1 KRT125P-201ENST00000546827 989 ntBASIC32.48■■■□□ 2.79
USP54Q70EL1 CASP9-202ENST00000348549 1621 ntTSL 1 (best) BASIC32.48■■■□□ 2.79
USP54Q70EL1 GPR75-ASB3-201ENST00000406625 2113 ntAPPRIS P1 TSL 2 BASIC32.48■■■□□ 2.79
USP54Q70EL1 AC073111.5-204ENST00000498682 1167 ntAPPRIS P1 TSL 2 BASIC32.47■■■□□ 2.79
USP54Q70EL1 RAB20-201ENST00000267328 1518 ntAPPRIS P1 TSL 1 (best) BASIC32.47■■■□□ 2.79
USP54Q70EL1 FBXO7-206ENST00000452138 1535 ntTSL 2 BASIC32.47■■■□□ 2.79
USP54Q70EL1 MAPKAPK2-201ENST00000294981 2171 ntTSL 1 (best) BASIC32.47■■■□□ 2.79
USP54Q70EL1 HOMER3-203ENST00000433218 1418 ntAPPRIS ALT1 TSL 5 BASIC32.47■■■□□ 2.79
USP54Q70EL1 HMX3-201ENST00000357878 1173 ntAPPRIS P1 TSL 2 BASIC32.46■■■□□ 2.79
USP54Q70EL1 SYCE1-204ENST00000432597 1254 ntAPPRIS ALT2 TSL 1 (best) BASIC32.46■■■□□ 2.79
USP54Q70EL1 ZNF419-210ENST00000520540 568 ntTSL 4 BASIC32.46■■■□□ 2.79
USP54Q70EL1 AC142086.6-201ENST00000621154 1765 ntBASIC32.46■■■□□ 2.79
USP54Q70EL1 CCDC71L-201ENST00000315965 1575 ntAPPRIS ALT2 TSL 5 BASIC32.46■■■□□ 2.79
USP54Q70EL1 MTURN-203ENST00000409688 843 ntTSL 2 BASIC32.46■■■□□ 2.79
USP54Q70EL1 CHTF8-205ENST00000519520 856 ntTSL 2 BASIC32.46■■■□□ 2.79
USP54Q70EL1 ACTR3B-201ENST00000256001 2216 ntAPPRIS P1 TSL 1 (best) BASIC32.45■■■□□ 2.78
USP54Q70EL1 RPL31-208ENST00000409733 825 ntAPPRIS P3 TSL 1 (best) BASIC32.44■■■□□ 2.78
USP54Q70EL1 SENP5-202ENST00000419026 973 ntTSL 3 BASIC32.44■■■□□ 2.78
USP54Q70EL1 NKIRAS2-209ENST00000479407 992 ntTSL 3 BASIC32.44■■■□□ 2.78
USP54Q70EL1 PLEKHJ1-213ENST00000591099 1092 ntTSL 2 BASIC32.44■■■□□ 2.78
USP54Q70EL1 C11orf80-210ENST00000527634 1666 ntAPPRIS ALT2 TSL 5 BASIC32.44■■■□□ 2.78
USP54Q70EL1 R3HCC1-201ENST00000265806 1773 ntAPPRIS ALT2 TSL 1 (best) BASIC32.44■■■□□ 2.78
USP54Q70EL1 ATPAF1-213ENST00000574428 1760 ntTSL 1 (best) BASIC32.44■■■□□ 2.78
USP54Q70EL1 POLE2-201ENST00000216367 1776 ntAPPRIS P1 TSL 1 (best) BASIC32.43■■■□□ 2.78
USP54Q70EL1 HMGA2-202ENST00000393577 611 ntTSL 3 BASIC32.43■■■□□ 2.78
USP54Q70EL1 GUCD1-202ENST00000402766 865 ntTSL 2 BASIC32.43■■■□□ 2.78
USP54Q70EL1 SERTAD4-AS1-202ENST00000475406 591 ntTSL 2 BASIC32.43■■■□□ 2.78
USP54Q70EL1 ZNF180-205ENST00000587047 525 ntTSL 4 BASIC32.43■■■□□ 2.78
USP54Q70EL1 PLEK2-201ENST00000216446 1549 ntAPPRIS P1 TSL 1 (best) BASIC32.43■■■□□ 2.78
USP54Q70EL1 IL15RA-214ENST00000525219 1850 ntAPPRIS ALT2 TSL 1 (best) BASIC32.42■■■□□ 2.78
USP54Q70EL1 MAGI2-AS3-201ENST00000414797 1072 ntTSL 2 BASIC32.42■■■□□ 2.78
USP54Q70EL1 AC131281.2-201ENST00000520478 145 ntBASIC32.42■■■□□ 2.78
USP54Q70EL1 RMI2-201ENST00000312499 1457 ntAPPRIS P1 TSL 1 (best) BASIC32.42■■■□□ 2.78
USP54Q70EL1 TSPOAP1-AS1-203ENST00000579527 2042 ntTSL 2 BASIC32.42■■■□□ 2.78
USP54Q70EL1 TESK1-206ENST00000620767 2438 ntAPPRIS P1 TSL 5 BASIC32.41■■■□□ 2.78
USP54Q70EL1 MADCAM1-202ENST00000346144 1309 ntAPPRIS ALT2 TSL 1 (best) BASIC32.4■■■□□ 2.78
USP54Q70EL1 MTCH1-201ENST00000373616 2006 ntTSL 1 (best) BASIC32.4■■■□□ 2.78
USP54Q70EL1 CIRBP-216ENST00000588090 1459 ntAPPRIS P3 TSL 3 BASIC32.4■■■□□ 2.78
USP54Q70EL1 PEMT-201ENST00000255389 1013 ntTSL 1 (best) BASIC32.4■■■□□ 2.78
USP54Q70EL1 SYT7-202ENST00000535826 1621 ntTSL 5 BASIC32.39■■■□□ 2.78
USP54Q70EL1 MAPK13-201ENST00000211287 2052 ntAPPRIS P1 TSL 1 (best) BASIC32.39■■■□□ 2.78
USP54Q70EL1 APLP1-201ENST00000221891 2495 ntAPPRIS P1 TSL 1 (best) BASIC32.39■■■□□ 2.78
USP54Q70EL1 CTSA-203ENST00000372459 1972 ntTSL 1 (best) BASIC32.39■■■□□ 2.78
USP54Q70EL1 FSD1-204ENST00000597590 1634 ntTSL 5 BASIC32.38■■■□□ 2.77
USP54Q70EL1 MRPS34-202ENST00000397375 1024 ntAPPRIS P1 TSL 1 (best) BASIC32.38■■■□□ 2.77
USP54Q70EL1 AC090587.2-201ENST00000430222 527 ntTSL 2 BASIC32.38■■■□□ 2.77
USP54Q70EL1 AC103702.2-201ENST00000433510 1270 ntTSL 2 BASIC32.38■■■□□ 2.77
USP54Q70EL1 MIR663AHG-227ENST00000608084 765 ntTSL 5 BASIC32.38■■■□□ 2.77
USP54Q70EL1 CHKA-202ENST00000356135 1755 ntAPPRIS ALT2 TSL 1 (best) BASIC32.38■■■□□ 2.77
USP54Q70EL1 EIF4EBP1-201ENST00000338825 1020 ntAPPRIS P1 TSL 1 (best) BASIC32.37■■■□□ 2.77
USP54Q70EL1 HNRNPUL1-222ENST00000617774 451 ntTSL 5 BASIC32.37■■■□□ 2.77
USP54Q70EL1 AC093762.1-201ENST00000641981 837 ntAPPRIS P1 BASIC32.37■■■□□ 2.77
USP54Q70EL1 MRPL4-207ENST00000590669 1423 ntTSL 1 (best) BASIC32.37■■■□□ 2.77
USP54Q70EL1 RTN2-202ENST00000344680 2063 ntAPPRIS P1 TSL 1 (best) BASIC32.37■■■□□ 2.77
USP54Q70EL1 TSPAN17-204ENST00000503045 1019 ntTSL 5 BASIC32.37■■■□□ 2.77
USP54Q70EL1 IGFBP7-203ENST00000514062 1251 ntAPPRIS ALT2 TSL 2 BASIC32.37■■■□□ 2.77
USP54Q70EL1 TTC3-225ENST00000540756 2025 ntTSL 2 BASIC32.36■■■□□ 2.77
USP54Q70EL1 SLC35B2-204ENST00000537814 1715 ntTSL 2 BASIC32.35■■■□□ 2.77
USP54Q70EL1 TMUB1-203ENST00000462940 1549 ntAPPRIS P1 TSL 1 (best) BASIC32.35■■■□□ 2.77
USP54Q70EL1 TOP1MT-208ENST00000519148 1868 ntTSL 2 BASIC32.34■■■□□ 2.77
USP54Q70EL1 ZNF653-201ENST00000293771 2240 ntAPPRIS P1 TSL 1 (best) BASIC32.34■■■□□ 2.77
USP54Q70EL1 RHEB-201ENST00000262187 2075 ntAPPRIS P1 TSL 1 (best) BASIC32.34■■■□□ 2.77
USP54Q70EL1 MDK-202ENST00000395565 951 ntAPPRIS P2 TSL 2 BASIC32.34■■■□□ 2.77
USP54Q70EL1 CDKN2A-207ENST00000497750 565 ntTSL 4 BASIC32.34■■■□□ 2.77
USP54Q70EL1 ARPC4-208ENST00000498623 942 ntTSL 2 BASIC32.34■■■□□ 2.77
USP54Q70EL1 CDKN2A-212ENST00000578845 678 ntTSL 2 BASIC32.34■■■□□ 2.77
USP54Q70EL1 BSCL2-205ENST00000403550 1693 ntAPPRIS P3 TSL 5 BASIC32.33■■■□□ 2.77
USP54Q70EL1 FEZ1-202ENST00000366139 1053 ntTSL 2 BASIC32.33■■■□□ 2.77
USP54Q70EL1 DHFR-203ENST00000505337 1719 ntAPPRIS P1 TSL 2 BASIC32.32■■■□□ 2.76
USP54Q70EL1 TMEM218-215ENST00000532407 1103 ntAPPRIS P1 TSL 1 (best) BASIC32.32■■■□□ 2.76
USP54Q70EL1 ZNF74-204ENST00000405993 1839 ntAPPRIS ALT2 TSL 5 BASIC32.32■■■□□ 2.76
Retrieved 100 of 98,524 protein–RNA pairs in 12.1 ms