Protein–RNA interactions for Protein: O94913

PCF11, Pre-mRNA cleavage complex 2 protein Pcf11, humanhuman

Known RBP Predictions only

Length 1,555 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCF11O94913 Z92544.1-202ENST00000571933 1220 ntBASIC37.85■■■■□ 3.65
PCF11O94913 TMEM55B-201ENST00000250489 1961 ntAPPRIS P3 TSL 1 (best) BASIC37.85■■■■□ 3.65
PCF11O94913 AMH-201ENST00000221496 1821 ntAPPRIS P1 TSL 1 (best) BASIC37.84■■■■□ 3.65
PCF11O94913 FGD5-AS1-204ENST00000430166 1184 ntTSL 2 BASIC37.84■■■■□ 3.65
PCF11O94913 AC022616.5-201ENST00000518796 181 ntBASIC37.84■■■■□ 3.65
PCF11O94913 PSMG1-201ENST00000331573 2154 ntAPPRIS P1 TSL 1 (best) BASIC37.83■■■■□ 3.65
PCF11O94913 MYL12B-203ENST00000581193 1249 ntAPPRIS P1 TSL 3 BASIC37.83■■■■□ 3.65
PCF11O94913 PCSK6-201ENST00000331826 2309 ntTSL 5 BASIC37.83■■■■□ 3.65
PCF11O94913 PYCR1-203ENST00000402252 1346 ntTSL 2 BASIC37.83■■■■□ 3.65
PCF11O94913 CENPVL1-201ENST00000602548 1620 ntAPPRIS P1 BASIC37.82■■■■□ 3.65
PCF11O94913 CENPVL2-201ENST00000634648 1620 ntAPPRIS P1 BASIC37.82■■■■□ 3.65
PCF11O94913 MT1E-201ENST00000306061 704 ntAPPRIS P1 TSL 1 (best) BASIC37.82■■■■□ 3.65
PCF11O94913 YPEL1-202ENST00000403503 466 ntTSL 3 BASIC37.82■■■■□ 3.65
PCF11O94913 PLEKHJ1-213ENST00000591099 1092 ntTSL 2 BASIC37.82■■■■□ 3.65
PCF11O94913 TCEA1-214ENST00000640382 1234 ntTSL 5 BASIC37.82■■■■□ 3.65
PCF11O94913 CHKA-202ENST00000356135 1755 ntAPPRIS ALT2 TSL 1 (best) BASIC37.82■■■■□ 3.64
PCF11O94913 CITED4-201ENST00000372638 1316 ntAPPRIS P1 BASIC37.82■■■■□ 3.64
PCF11O94913 PLEKHF1-201ENST00000436066 2084 ntAPPRIS P1 TSL 1 (best) BASIC37.82■■■■□ 3.64
PCF11O94913 RBM33-201ENST00000287912 1404 ntTSL 2 BASIC37.82■■■■□ 3.64
PCF11O94913 CNNM2-201ENST00000369875 2059 ntTSL 1 (best) BASIC37.81■■■■□ 3.64
PCF11O94913 CREM-229ENST00000474362 1030 ntTSL 2 BASIC37.81■■■■□ 3.64
PCF11O94913 NR6A1-203ENST00000416460 1898 ntAPPRIS ALT2 TSL 1 (best) BASIC37.81■■■■□ 3.64
PCF11O94913 HMX2-201ENST00000339992 1628 ntAPPRIS P1 TSL 1 (best) BASIC37.81■■■■□ 3.64
PCF11O94913 FAM66E-202ENST00000533615 2087 ntTSL 2 BASIC37.81■■■■□ 3.64
PCF11O94913 AP002893.1-201ENST00000528885 684 ntTSL 2 BASIC37.8■■■■□ 3.64
PCF11O94913 SNAI3-AS1-203ENST00000565633 829 ntTSL 5 BASIC37.8■■■■□ 3.64
PCF11O94913 BCKDHB-202ENST00000356489 1514 ntAPPRIS P1 TSL 1 (best) BASIC37.8■■■■□ 3.64
PCF11O94913 REEP6-201ENST00000233596 1794 ntAPPRIS P2 TSL 1 (best) BASIC37.8■■■■□ 3.64
PCF11O94913 ST6GALNAC6-203ENST00000373142 2448 ntTSL 1 (best) BASIC37.8■■■■□ 3.64
PCF11O94913 FLT1-202ENST00000539099 1911 ntTSL 1 (best) BASIC37.8■■■■□ 3.64
PCF11O94913 HOXC-AS1-201ENST00000505700 548 ntTSL 2 BASIC37.79■■■■□ 3.64
PCF11O94913 AP003068.2-202ENST00000526623 1662 ntTSL 2 BASIC37.79■■■■□ 3.64
PCF11O94913 PIK3R2-207ENST00000617130 2187 ntAPPRIS P1 TSL 1 (best) BASIC37.78■■■■□ 3.64
PCF11O94913 CFAP77-202ENST00000393215 901 ntAPPRIS ALT2 TSL 5 BASIC37.78■■■■□ 3.64
PCF11O94913 ST20-MTHFS-201ENST00000479961 859 ntAPPRIS P1 TSL 3 BASIC37.78■■■■□ 3.64
PCF11O94913 MIR4281-201ENST00000580852 62 ntBASIC37.78■■■■□ 3.64
PCF11O94913 SLC52A2-208ENST00000527078 1790 ntAPPRIS P1 TSL 5 BASIC37.78■■■■□ 3.64
PCF11O94913 CCDC71L-201ENST00000315965 1575 ntAPPRIS ALT2 TSL 5 BASIC37.77■■■■□ 3.64
PCF11O94913 R3HCC1-202ENST00000411463 1467 ntAPPRIS P5 TSL 5 BASIC37.77■■■■□ 3.64
PCF11O94913 NDEL1-202ENST00000380025 2181 ntTSL 5 BASIC37.77■■■■□ 3.64
PCF11O94913 TANGO2-214ENST00000447208 2086 ntTSL 3 BASIC37.77■■■■□ 3.64
PCF11O94913 IL15RA-214ENST00000525219 1850 ntAPPRIS ALT2 TSL 1 (best) BASIC37.77■■■■□ 3.64
PCF11O94913 GTF2E2-201ENST00000355904 1762 ntAPPRIS P1 TSL 1 (best) BASIC37.77■■■■□ 3.64
PCF11O94913 FSD1-204ENST00000597590 1634 ntTSL 5 BASIC37.77■■■■□ 3.64
PCF11O94913 SLC39A3-201ENST00000269740 1502 ntAPPRIS P1 TSL 1 (best) BASIC37.77■■■■□ 3.64
PCF11O94913 EBPL-205ENST00000378284 967 ntTSL 1 (best) BASIC37.76■■■■□ 3.64
PCF11O94913 AC239859.2-201ENST00000444165 318 ntBASIC37.76■■■■□ 3.64
PCF11O94913 C2CD4D-201ENST00000454109 1757 ntAPPRIS P1 TSL 2 BASIC37.76■■■■□ 3.64
PCF11O94913 HOMER3-201ENST00000221222 1384 ntAPPRIS ALT1 TSL 5 BASIC37.75■■■■□ 3.63
PCF11O94913 KISS1-201ENST00000367194 709 ntAPPRIS P2 TSL 1 (best) BASIC37.75■■■■□ 3.63
PCF11O94913 CLIC3-203ENST00000494426 1017 ntAPPRIS P1 TSL 1 (best) BASIC37.75■■■■□ 3.63
PCF11O94913 TMEM165-204ENST00000506198 828 ntTSL 2 BASIC37.75■■■■□ 3.63
PCF11O94913 TMEM218-215ENST00000532407 1103 ntAPPRIS P1 TSL 1 (best) BASIC37.75■■■■□ 3.63
PCF11O94913 SYT7-202ENST00000535826 1621 ntTSL 5 BASIC37.75■■■■□ 3.63
PCF11O94913 TOP1MT-208ENST00000519148 1868 ntTSL 2 BASIC37.75■■■■□ 3.63
PCF11O94913 DUSP22-201ENST00000344450 1485 ntTSL 1 (best) BASIC37.74■■■■□ 3.63
PCF11O94913 TSPAN10-203ENST00000574882 1837 ntAPPRIS P2 TSL 1 (best) BASIC37.74■■■■□ 3.63
PCF11O94913 AL117209.1-201ENST00000560931 828 ntTSL 3 BASIC37.73■■■■□ 3.63
PCF11O94913 FAM173A-207ENST00000569529 1052 ntAPPRIS P3 TSL 1 (best) BASIC37.73■■■■□ 3.63
PCF11O94913 LINC01925-201ENST00000579492 500 ntTSL 5 BASIC37.73■■■■□ 3.63
PCF11O94913 HDGFL1-201ENST00000510882 2174 ntAPPRIS P1 BASIC37.73■■■■□ 3.63
PCF11O94913 C19orf47-202ENST00000392035 2126 ntAPPRIS ALT2 TSL 1 (best) BASIC37.73■■■■□ 3.63
PCF11O94913 IRAK1-205ENST00000429936 2127 ntTSL 5 BASIC37.73■■■■□ 3.63
PCF11O94913 SLC25A6-201ENST00000381401 2062 ntAPPRIS P1 TSL 1 (best) BASIC37.72■■■■□ 3.63
PCF11O94913 TRAPPC5-202ENST00000426877 765 ntAPPRIS P1 TSL 2 BASIC37.72■■■■□ 3.63
PCF11O94913 AC120024.1-201ENST00000562672 995 ntBASIC37.72■■■■□ 3.63
PCF11O94913 ERO1A-211ENST00000629528 998 ntTSL 5 BASIC37.72■■■■□ 3.63
PCF11O94913 ST3GAL6-AS1-203ENST00000488132 769 ntTSL 3 BASIC37.72■■■■□ 3.63
PCF11O94913 HMG20B-202ENST00000333651 1596 ntAPPRIS P1 TSL 1 (best) BASIC37.71■■■■□ 3.63
PCF11O94913 AC011511.4-201ENST00000586529 1850 ntAPPRIS P1 TSL 5 BASIC37.71■■■■□ 3.63
PCF11O94913 FBXO7-206ENST00000452138 1535 ntTSL 2 BASIC37.71■■■■□ 3.63
PCF11O94913 BX664725.1-201ENST00000438252 379 ntBASIC37.7■■■■□ 3.63
PCF11O94913 TMUB1-201ENST00000297533 1353 ntAPPRIS P1 TSL 1 (best) BASIC37.7■■■■□ 3.63
PCF11O94913 NFU1-203ENST00000410022 1467 ntAPPRIS P3 TSL 1 (best) BASIC37.7■■■■□ 3.63
PCF11O94913 FAM107A-203ENST00000447756 1432 ntTSL 1 (best) BASIC37.69■■■■□ 3.62
PCF11O94913 KRT18P24-201ENST00000344739 1156 ntBASIC37.69■■■■□ 3.62
PCF11O94913 MOSPD3-204ENST00000424091 1115 ntTSL 1 (best) BASIC37.69■■■■□ 3.62
PCF11O94913 CUL4A-209ENST00000488558 1111 ntTSL 3 BASIC37.69■■■■□ 3.62
PCF11O94913 AC026785.2-201ENST00000511821 867 ntTSL 2 BASIC37.69■■■■□ 3.62
PCF11O94913 CLK2-203ENST00000368361 2166 ntAPPRIS ALT1 TSL 1 (best) BASIC37.69■■■■□ 3.62
PCF11O94913 MRPL4-207ENST00000590669 1423 ntTSL 1 (best) BASIC37.69■■■■□ 3.62
PCF11O94913 UNC93B8-201ENST00000511903 705 ntBASIC37.68■■■■□ 3.62
PCF11O94913 MIR638-201ENST00000385237 100 ntBASIC37.68■■■■□ 3.62
PCF11O94913 AP001267.3-203ENST00000554407 579 ntTSL 2 BASIC37.68■■■■□ 3.62
PCF11O94913 TST-201ENST00000249042 1211 ntAPPRIS P1 TSL 1 (best) BASIC37.67■■■■□ 3.62
PCF11O94913 LSM7-204ENST00000587502 575 ntTSL 1 (best) BASIC37.67■■■■□ 3.62
PCF11O94913 CFD-202ENST00000592860 809 ntAPPRIS ALT2 TSL 1 (best) BASIC37.67■■■■□ 3.62
PCF11O94913 KCNJ4-201ENST00000303592 2065 ntAPPRIS P1 TSL 1 (best) BASIC37.65■■■■□ 3.62
PCF11O94913 HTRA2-202ENST00000352222 1450 ntTSL 1 (best) BASIC37.65■■■■□ 3.62
PCF11O94913 TNIP2-201ENST00000315423 1974 ntAPPRIS P3 TSL 1 (best) BASIC37.65■■■■□ 3.62
PCF11O94913 SCCPDH-201ENST00000366510 2503 ntAPPRIS P1 TSL 1 (best) BASIC37.65■■■■□ 3.62
PCF11O94913 GRAMD4P7-201ENST00000578182 1232 ntBASIC37.65■■■■□ 3.62
PCF11O94913 SNX24-201ENST00000261369 2158 ntAPPRIS P1 TSL 1 (best) BASIC37.65■■■■□ 3.62
PCF11O94913 MTNR1B-201ENST00000257068 1565 ntAPPRIS P1 TSL 1 (best) BASIC37.65■■■■□ 3.62
PCF11O94913 RAB20-201ENST00000267328 1518 ntAPPRIS P1 TSL 1 (best) BASIC37.64■■■■□ 3.62
PCF11O94913 PAIP1-208ENST00000514514 1603 ntTSL 5 BASIC37.64■■■■□ 3.62
PCF11O94913 BRI3-201ENST00000297290 780 ntAPPRIS P1 TSL 1 (best) BASIC37.63■■■■□ 3.62
PCF11O94913 VSTM2L-201ENST00000373459 831 ntTSL 3 BASIC37.63■■■■□ 3.62
PCF11O94913 ZNF775-201ENST00000329630 2257 ntAPPRIS P1 TSL 1 (best) BASIC37.63■■■■□ 3.62
PCF11O94913 PORCN-202ENST00000355961 1848 ntAPPRIS ALT1 TSL 1 (best) BASIC37.63■■■■□ 3.61
Retrieved 100 of 98,524 protein–RNA pairs in 30.1 ms