Protein–RNA interactions for Protein: O00555

CACNA1A, Voltage-dependent P/Q-type calcium channel subunit alpha-1A, humanhuman

Predictions only

Length 2,505 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CACNA1AO00555 KCNMA1-224ENST00000618048 1269 ntTSL 1 (best) BASIC23.27■■□□□ 1.32
CACNA1AO00555 SLC25A10-203ENST00000545862 1911 ntTSL 1 (best) BASIC23.26■■□□□ 1.31
CACNA1AO00555 NSMCE4A-202ENST00000369023 1394 ntAPPRIS P1 TSL 1 (best) BASIC23.26■■□□□ 1.31
CACNA1AO00555 MIR17HG-201ENST00000400282 931 ntTSL 1 (best) BASIC23.26■■□□□ 1.31
CACNA1AO00555 FPGS-202ENST00000373228 1383 ntTSL 5 BASIC23.26■■□□□ 1.31
CACNA1AO00555 RAB12-201ENST00000329286 2137 ntAPPRIS P1 TSL 1 (best) BASIC23.25■■□□□ 1.31
CACNA1AO00555 HMX1-201ENST00000400677 1895 ntAPPRIS P1 TSL 1 (best) BASIC23.25■■□□□ 1.31
CACNA1AO00555 RASA4CP-201ENST00000424092 1398 ntBASIC23.25■■□□□ 1.31
CACNA1AO00555 CYB561D2-205ENST00000425346 1319 ntAPPRIS P1 TSL 1 (best) BASIC23.25■■□□□ 1.31
CACNA1AO00555 ZNF32-202ENST00000395797 1201 ntAPPRIS P1 TSL 2 BASIC23.25■■□□□ 1.31
CACNA1AO00555 SDSL-201ENST00000345635 1397 ntAPPRIS P1 TSL 1 (best) BASIC23.25■■□□□ 1.31
CACNA1AO00555 NAA38-201ENST00000333775 999 ntTSL 1 (best) BASIC23.24■■□□□ 1.31
CACNA1AO00555 MELTF-AS1-202ENST00000415244 951 ntTSL 1 (best) BASIC23.24■■□□□ 1.31
CACNA1AO00555 SLC47A1P1-202ENST00000449666 945 ntBASIC23.24■■□□□ 1.31
CACNA1AO00555 ORAI3-202ENST00000562699 628 ntTSL 2 BASIC23.24■■□□□ 1.31
CACNA1AO00555 GPX4-213ENST00000622390 1002 ntTSL 5 BASIC23.24■■□□□ 1.31
CACNA1AO00555 ATRNL1-209ENST00000609571 1818 ntTSL 1 (best) BASIC23.24■■□□□ 1.31
CACNA1AO00555 SPI1-201ENST00000227163 1168 ntAPPRIS ALT1 TSL 2 BASIC23.24■■□□□ 1.31
CACNA1AO00555 SMCO4-201ENST00000298966 1104 ntAPPRIS P1 TSL 1 (best) BASIC23.23■■□□□ 1.31
CACNA1AO00555 NTN3-201ENST00000293973 1986 ntAPPRIS P1 TSL 1 (best) BASIC23.23■■□□□ 1.31
CACNA1AO00555 CCNYL1-203ENST00000392209 1952 ntTSL 2 BASIC23.23■■□□□ 1.31
CACNA1AO00555 AC024267.6-201ENST00000580603 583 ntTSL 3 BASIC23.23■■□□□ 1.31
CACNA1AO00555 BAG1-212ENST00000641048 1038 ntAPPRIS P3 BASIC23.23■■□□□ 1.31
CACNA1AO00555 GDNF-203ENST00000381826 778 ntTSL 1 (best) BASIC23.22■■□□□ 1.31
CACNA1AO00555 GDNF-204ENST00000427982 856 ntTSL 1 (best) BASIC23.22■■□□□ 1.31
CACNA1AO00555 NRBF2-202ENST00000435510 1816 ntTSL 2 BASIC23.22■■□□□ 1.31
CACNA1AO00555 TRIM7-202ENST00000334421 1228 ntTSL 1 (best) BASIC23.22■■□□□ 1.31
CACNA1AO00555 LRRC1-201ENST00000370882 808 ntTSL 3 BASIC23.22■■□□□ 1.31
CACNA1AO00555 CFAP77-202ENST00000393215 901 ntAPPRIS ALT2 TSL 5 BASIC23.22■■□□□ 1.31
CACNA1AO00555 GRAMD4P4-201ENST00000613563 1115 ntBASIC23.22■■□□□ 1.31
CACNA1AO00555 WHAMMP3-201ENST00000611636 1609 ntBASIC23.22■■□□□ 1.31
CACNA1AO00555 CPSF4-207ENST00000451876 1644 ntTSL 5 BASIC23.21■■□□□ 1.31
CACNA1AO00555 HACD1-201ENST00000326961 773 ntTSL 2 BASIC23.21■■□□□ 1.31
CACNA1AO00555 PPA1-202ENST00000373232 1295 ntAPPRIS P1 TSL 1 (best) BASIC23.21■■□□□ 1.31
CACNA1AO00555 AL590128.2-201ENST00000442889 415 ntTSL 3 BASIC23.21■■□□□ 1.31
CACNA1AO00555 FKBP1A-204ENST00000400137 1622 ntAPPRIS P1 TSL 1 (best) BASIC23.21■■□□□ 1.31
CACNA1AO00555 RBM33-201ENST00000287912 1404 ntTSL 2 BASIC23.21■■□□□ 1.31
CACNA1AO00555 C19orf60-201ENST00000358607 839 ntAPPRIS P3 TSL 1 (best) BASIC23.21■■□□□ 1.31
CACNA1AO00555 ASB1-202ENST00000409297 878 ntTSL 5 BASIC23.21■■□□□ 1.31
CACNA1AO00555 C19orf60-202ENST00000450195 702 ntAPPRIS ALT2 TSL 1 (best) BASIC23.21■■□□□ 1.31
CACNA1AO00555 HIST1H2AM-201ENST00000359611 393 ntAPPRIS P1 BASIC23.2■■□□□ 1.3
CACNA1AO00555 NEBL-AS1-202ENST00000439097 661 ntTSL 2 BASIC23.2■■□□□ 1.3
CACNA1AO00555 AC092343.1-201ENST00000500224 729 ntTSL 3 BASIC23.2■■□□□ 1.3
CACNA1AO00555 C17orf97-203ENST00000571106 736 ntAPPRIS ALT2 TSL 2 BASIC23.2■■□□□ 1.3
CACNA1AO00555 SDSL-202ENST00000403593 1449 ntAPPRIS P1 TSL 1 (best) BASIC23.2■■□□□ 1.3
CACNA1AO00555 STOX2-205ENST00000513034 807 ntTSL 3 BASIC23.19■■□□□ 1.3
CACNA1AO00555 MSRB2-201ENST00000376510 1803 ntAPPRIS P1 TSL 1 (best) BASIC23.19■■□□□ 1.3
CACNA1AO00555 TFPT-201ENST00000391757 774 ntTSL 5 BASIC23.18■■□□□ 1.3
CACNA1AO00555 TFPT-202ENST00000391758 804 ntAPPRIS ALT2 TSL 1 (best) BASIC23.18■■□□□ 1.3
CACNA1AO00555 C17orf49-202ENST00000546495 996 ntAPPRIS ALT1 TSL 2 BASIC23.18■■□□□ 1.3
CACNA1AO00555 PYCARD-AS1-201ENST00000561916 1095 ntTSL 2 BASIC23.18■■□□□ 1.3
CACNA1AO00555 AL137784.2-201ENST00000607332 1000 ntBASIC23.18■■□□□ 1.3
CACNA1AO00555 RAB26-201ENST00000210187 1675 ntAPPRIS P1 TSL 1 (best) BASIC23.18■■□□□ 1.3
CACNA1AO00555 LLGL2-202ENST00000375227 1374 ntTSL 1 (best) BASIC23.18■■□□□ 1.3
CACNA1AO00555 TM6SF1-204ENST00000379390 1638 ntTSL 1 (best) BASIC23.18■■□□□ 1.3
CACNA1AO00555 SMIM29-205ENST00000468145 903 ntTSL 2 BASIC23.18■■□□□ 1.3
CACNA1AO00555 SMIM29-207ENST00000481533 1053 ntAPPRIS P1 TSL 1 (best) BASIC23.18■■□□□ 1.3
CACNA1AO00555 LINC01942-201ENST00000521373 513 ntTSL 4 BASIC23.18■■□□□ 1.3
CACNA1AO00555 NKX2-2-AS1-201ENST00000549659 638 ntTSL 5 BASIC23.18■■□□□ 1.3
CACNA1AO00555 GATA6-202ENST00000581694 2057 ntAPPRIS P1 TSL 1 (best) BASIC23.17■■□□□ 1.3
CACNA1AO00555 BCL7B-201ENST00000223368 1975 ntAPPRIS P1 TSL 1 (best) BASIC23.17■■□□□ 1.3
CACNA1AO00555 AL359504.2-201ENST00000605506 1601 ntBASIC23.17■■□□□ 1.3
CACNA1AO00555 LDLRAD4-218ENST00000592991 1640 ntTSL 1 (best) BASIC23.17■■□□□ 1.3
CACNA1AO00555 ANKRD53-203ENST00000441349 1797 ntTSL 5 BASIC23.16■■□□□ 1.3
CACNA1AO00555 C1QTNF12-201ENST00000330388 1036 ntAPPRIS P1 TSL 1 (best) BASIC23.16■■□□□ 1.3
CACNA1AO00555 GLTPD2-201ENST00000331264 1023 ntAPPRIS P1 TSL 1 (best) BASIC23.16■■□□□ 1.3
CACNA1AO00555 FAM136A-202ENST00000430566 885 ntTSL 3 BASIC23.16■■□□□ 1.3
CACNA1AO00555 WDR38-203ENST00000618744 1270 ntTSL 1 (best) BASIC23.16■■□□□ 1.3
CACNA1AO00555 PPM1J-201ENST00000309276 1863 ntAPPRIS P1 TSL 1 (best) BASIC23.16■■□□□ 1.3
CACNA1AO00555 PICSAR-201ENST00000615826 733 ntTSL 1 (best) BASIC23.16■■□□□ 1.3
CACNA1AO00555 C7orf50-202ENST00000397098 2131 ntAPPRIS P2 TSL 1 (best) BASIC23.15■■□□□ 1.3
CACNA1AO00555 PRELID1-201ENST00000303204 1261 ntAPPRIS P1 TSL 1 (best) BASIC23.15■■□□□ 1.3
CACNA1AO00555 DLX3-202ENST00000512495 834 ntTSL 2 BASIC23.15■■□□□ 1.3
CACNA1AO00555 KAZN-207ENST00000503743 1475 ntTSL 1 (best) BASIC23.15■■□□□ 1.3
CACNA1AO00555 RBFA-201ENST00000262197 1219 ntTSL 1 (best) BASIC23.15■■□□□ 1.3
CACNA1AO00555 FXYD7-201ENST00000270310 712 ntAPPRIS P2 TSL 1 (best) BASIC23.15■■□□□ 1.3
CACNA1AO00555 NIT1-201ENST00000368007 1749 ntTSL 2 BASIC23.14■■□□□ 1.3
CACNA1AO00555 AC104986.2-201ENST00000521696 380 ntTSL 2 BASIC23.14■■□□□ 1.3
CACNA1AO00555 GUK1-207ENST00000366726 873 ntAPPRIS P3 TSL 3 BASIC23.14■■□□□ 1.29
CACNA1AO00555 CD72-202ENST00000378430 585 ntTSL 3 BASIC23.14■■□□□ 1.29
CACNA1AO00555 PTMS-207ENST00000619580 1150 ntAPPRIS P1 TSL 1 (best) BASIC23.14■■□□□ 1.29
CACNA1AO00555 TMEM218-209ENST00000529583 848 ntAPPRIS P1 TSL 3 BASIC23.13■■□□□ 1.29
CACNA1AO00555 SUZ12P1-202ENST00000578070 929 ntTSL 5 BASIC23.13■■□□□ 1.29
CACNA1AO00555 RPP38-201ENST00000378197 1457 ntAPPRIS P1 TSL 1 (best) BASIC23.13■■□□□ 1.29
CACNA1AO00555 HMG20B-202ENST00000333651 1596 ntAPPRIS P1 TSL 1 (best) BASIC23.13■■□□□ 1.29
CACNA1AO00555 ZNF428-201ENST00000300811 1412 ntAPPRIS P1 TSL 1 (best) BASIC23.13■■□□□ 1.29
CACNA1AO00555 UBE2E2-203ENST00000425792 1248 ntAPPRIS P1 TSL 2 BASIC23.13■■□□□ 1.29
CACNA1AO00555 ELK4-201ENST00000289703 2118 ntTSL 1 (best) BASIC23.13■■□□□ 1.29
CACNA1AO00555 CA15P2-201ENST00000611168 834 ntBASIC23.12■■□□□ 1.29
CACNA1AO00555 JTB-203ENST00000368589 1216 ntTSL 2 BASIC23.12■■□□□ 1.29
CACNA1AO00555 ZNF263-204ENST00000573578 1636 ntTSL 5 BASIC23.11■■□□□ 1.29
CACNA1AO00555 SAMD1-202ENST00000533683 2164 ntAPPRIS P5 TSL 1 (best) BASIC23.11■■□□□ 1.29
CACNA1AO00555 AC012313.1-204ENST00000444227 462 ntTSL 1 (best) BASIC23.11■■□□□ 1.29
CACNA1AO00555 TGFBR3L-202ENST00000565886 1260 ntAPPRIS P1 TSL 5 BASIC23.11■■□□□ 1.29
CACNA1AO00555 PDCD5-204ENST00000586035 601 ntTSL 3 BASIC23.11■■□□□ 1.29
CACNA1AO00555 HLA-L-209ENST00000420110 1011 ntBASIC23.11■■□□□ 1.29
CACNA1AO00555 STK25-202ENST00000401869 2251 ntAPPRIS P1 TSL 1 (best) BASIC23.11■■□□□ 1.29
CACNA1AO00555 SPI1-202ENST00000378538 1403 ntAPPRIS P3 TSL 1 (best) BASIC23.1■■□□□ 1.29
CACNA1AO00555 C12orf75-201ENST00000443585 1366 ntAPPRIS P1 TSL 2 BASIC23.1■■□□□ 1.29
CACNA1AO00555 MAG-206ENST00000597035 542 ntTSL 4 BASIC23.1■■□□□ 1.29
Retrieved 100 of 98,524 protein–RNA pairs in 36.8 ms