RNA–Protein interactions for RNA: ENST00000427982.5

GDNF-204, Transcript of glial cell derived neurotrophic factor, humanhuman

TSL 1 (best) BASIC

Gene GDNF, Length 856 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GDNF-204ENST00000427982 NISCHQ9Y2I1 1504 aa54.16■■■■■ 6.26
GDNF-204ENST00000427982 CCDC180Q9P1Z9 1646 aa48.6■■■■■ 5.37
GDNF-204ENST00000427982 ABCC9O60706 1549 aa48.12■■■■■ 5.29
GDNF-204ENST00000427982 RB1CC1Q8TDY2 1594 aa46.01■■■■■ 4.96
GDNF-204ENST00000427982 NACADO15069 1562 aa45.78■■■■■ 4.92
GDNF-204ENST00000427982 DCAF8L2P0C7V8 631 aa45.3■■■■■ 4.84
GDNF-204ENST00000427982 MYO15BQ96JP2 1530 aa45.29■■■■■ 4.84
GDNF-204ENST00000427982 UNC13AQ9UPW8 1703 aa45.2■■■■■ 4.83
GDNF-204ENST00000427982 ZCCHC6Q5VYS8 1495 aaKnown RBP44.97■■■■■ 4.79
GDNF-204ENST00000427982 DNAJC5BQ9UF47 199 aa44.88■■■■■ 4.78
GDNF-204ENST00000427982 DCAF1Q9Y4B6 1507 aa44.81■■■■■ 4.76
GDNF-204ENST00000427982 BICRAQ9NZM4 1560 aa44.75■■■■■ 4.75
GDNF-204ENST00000427982 PABPN1Q86U42 306 aaKnown RBP eCLIP44.75■■■■■ 4.75
GDNF-204ENST00000427982 SCRIBQ14160 1630 aa44.17■■■■■ 4.66
GDNF-204ENST00000427982 SHROOM4Q9ULL8 1493 aa44.12■■■■■ 4.65
GDNF-204ENST00000427982 CC2D2AQ9P2K1 1620 aa43.59■■■■■ 4.57
GDNF-204ENST00000427982 EIF4G1Q04637 1599 aaKnown RBP43.56■■■■■ 4.56
GDNF-204ENST00000427982 CECR2Q9BXF3 1484 aa43.32■■■■■ 4.52
GDNF-204ENST00000427982 SMARCA4P51532 1647 aa42.24■■■■■ 4.35
GDNF-204ENST00000427982 NCAPD3P42695 1498 aa42.23■■■■■ 4.35
GDNF-204ENST00000427982 ATAD2BQ9ULI0 1458 aa42.13■■■■■ 4.34
GDNF-204ENST00000427982 SMARCA2P51531 1590 aa42.05■■■■■ 4.32
GDNF-204ENST00000427982 BAZ1AQ9NRL2 1556 aaPredicted RBP42.01■■■■■ 4.32
GDNF-204ENST00000427982 HMGXB3Q12766 1538 aa42■■■■■ 4.31
GDNF-204ENST00000427982 PEG3Q9GZU2 1588 aa41.87■■■■■ 4.29
GDNF-204ENST00000427982 MROH2BQ7Z745 1585 aa41.74■■■■■ 4.27
GDNF-204ENST00000427982 BAZ1BQ9UIG0 1483 aaKnown RBP41.71■■■■■ 4.27
GDNF-204ENST00000427982 NESP48681 1621 aa41.47■■■■■ 4.23
GDNF-204ENST00000427982 ERCC6Q03468 1493 aa41.47■■■■■ 4.23
GDNF-204ENST00000427982 CUX2O14529 1486 aa41.4■■■■■ 4.22
GDNF-204ENST00000427982 WIZO95785 1651 aa41.29■■■■■ 4.2
GDNF-204ENST00000427982 LAMC3Q9Y6N6 1575 aa41.28■■■■■ 4.2
GDNF-204ENST00000427982 THOC2Q8NI27 1593 aaKnown RBP41.09■■■■■ 4.17
GDNF-204ENST00000427982 KIF21AQ7Z4S6 1674 aa41.07■■■■■ 4.17
GDNF-204ENST00000427982 DNAJC5Q9H3Z4 198 aa40.97■■■■■ 4.15
GDNF-204ENST00000427982 RSF1Q96T23 1441 aaPredicted RBP40.93■■■■■ 4.14
GDNF-204ENST00000427982 CADPSQ9ULU8 1353 aa40.9■■■■■ 4.14
GDNF-204ENST00000427982 PDS5BQ9NTI5 1447 aa40.9■■■■■ 4.14
GDNF-204ENST00000427982 TOP2AP11388 1531 aaKnown RBP40.76■■■■■ 4.12
GDNF-204ENST00000427982 MRC2Q9UBG0 1479 aa40.58■■■■■ 4.09
GDNF-204ENST00000427982 CFTRP13569 1480 aa40.56■■■■■ 4.08
GDNF-204ENST00000427982 WDR62O43379 1518 aa40.55■■■■■ 4.08
GDNF-204ENST00000427982 CEP164Q9UPV0 1460 aa40.47■■■■■ 4.07
GDNF-204ENST00000427982 FANCD2Q9BXW9 1451 aa40.45■■■■■ 4.07
GDNF-204ENST00000427982 PRDM2Q13029 1718 aa40.39■■■■■ 4.06
GDNF-204ENST00000427982 CCDC88BA6NC98 1476 aa40.25■■■■■ 4.03
GDNF-204ENST00000427982 URB2Q14146 1524 aaKnown RBP40.16■■■■■ 4.02
GDNF-204ENST00000427982 TOPBP1Q92547 1522 aa39.76■■■■□ 3.96
GDNF-204ENST00000427982 ABCC8Q09428 1581 aa39.67■■■■□ 3.94
GDNF-204ENST00000427982 DNMBPQ6XZF7 1577 aa39.67■■■■□ 3.94
GDNF-204ENST00000427982 IFT140Q96RY7 1462 aa39.65■■■■□ 3.94
GDNF-204ENST00000427982 ZNF608Q9ULD9 1512 aaPredicted RBP39.59■■■■□ 3.93
GDNF-204ENST00000427982 TARBP1Q13395 1621 aaKnown RBP39.47■■■■□ 3.91
GDNF-204ENST00000427982 EIF4G3O43432 1585 aaKnown RBP39.46■■■■□ 3.91
GDNF-204ENST00000427982 OSCARQ8IYS5 282 aa39.43■■■■□ 3.9
GDNF-204ENST00000427982 POLA1P09884 1462 aaPredicted RBP39.37■■■■□ 3.89
GDNF-204ENST00000427982 AQRO60306 1485 aaKnown RBP eCLIP39.22■■■■□ 3.87
GDNF-204ENST00000427982 CUX1P39880 1505 aa39.2■■■■□ 3.87
GDNF-204ENST00000427982 RAD54L2Q9Y4B4 1467 aa39.18■■■■□ 3.86
GDNF-204ENST00000427982 TRIM41Q8WV44 630 aa39.18■■■■□ 3.86
GDNF-204ENST00000427982 CHD1O14646 1710 aa39.17■■■■□ 3.86
GDNF-204ENST00000427982 FGD5Q6ZNL6 1462 aa39.15■■■■□ 3.86
GDNF-204ENST00000427982 SUPT5HO00267 1087 aaKnown RBP39.14■■■■□ 3.86
GDNF-204ENST00000427982 SOGA1O94964 1423 aa39.11■■■■□ 3.85
GDNF-204ENST00000427982 WDR97A6NE52 1622 aa39.08■■■■□ 3.85
GDNF-204ENST00000427982 RIMBP3CA6NJZ7 1639 aa39.07■■■■□ 3.84
GDNF-204ENST00000427982 RIMBP3BA6NNM3 1639 aa39.07■■■■□ 3.84
GDNF-204ENST00000427982 RIMBP3Q9UFD9 1639 aa39.07■■■■□ 3.84
GDNF-204ENST00000427982 TDRD9Q8NDG6 1382 aaKnown RBP38.99■■■■□ 3.83
GDNF-204ENST00000427982 ARHGEF11O15085 1522 aa38.94■■■■□ 3.82
GDNF-204ENST00000427982 SNAPC4Q5SXM2 1469 aa38.85■■■■□ 3.81
GDNF-204ENST00000427982 PBRM1Q86U86 1689 aa38.81■■■■□ 3.8
GDNF-204ENST00000427982 MAGI1Q96QZ7 1491 aaPredicted RBP38.79■■■■□ 3.8
GDNF-204ENST00000427982 GRIN2BQ13224 1484 aa38.78■■■■□ 3.8
GDNF-204ENST00000427982 FBLN2P98095 1184 aa38.75■■■■□ 3.79
GDNF-204ENST00000427982 ABCA10Q8WWZ4 1543 aa38.74■■■■□ 3.79
GDNF-204ENST00000427982 ABCA5Q8WWZ7 1642 aa38.74■■■■□ 3.79
GDNF-204ENST00000427982 BIVM-ERCC5R4GMW8 1640 aa38.74■■■■□ 3.79
GDNF-204ENST00000427982 GAPVD1Q14C86 1478 aa38.68■■■■□ 3.78
GDNF-204ENST00000427982 TOP2BQ02880 1626 aa38.68■■■■□ 3.78
GDNF-204ENST00000427982 CLASP1Q7Z460 1538 aa38.67■■■■□ 3.78
GDNF-204ENST00000427982 SYNJ2O15056 1496 aa38.64■■■■□ 3.78
GDNF-204ENST00000427982 SYNJ1O43426 1573 aa38.64■■■■□ 3.78
GDNF-204ENST00000427982 WRNQ14191 1432 aaPredicted RBP eCLIP38.57■■■■□ 3.77
GDNF-204ENST00000427982 ARAP1Q96P48 1450 aa38.57■■■■□ 3.76
GDNF-204ENST00000427982 CHMP7Q8WUX9 453 aaPredicted RBP38.56■■■■□ 3.76
GDNF-204ENST00000427982 CYB5RLQ6IPT4 315 aa38.46■■■■□ 3.75
GDNF-204ENST00000427982 ADAMTS12P58397 1594 aa38.4■■■■□ 3.74
GDNF-204ENST00000427982 GRIN2AQ12879 1464 aa38.31■■■■□ 3.72
GDNF-204ENST00000427982 ERICH3Q5RHP9 1530 aa38.28■■■■□ 3.72
GDNF-204ENST00000427982 CEP170Q5SW79 1584 aa38.22■■■■□ 3.71
GDNF-204ENST00000427982 FHAD1B1AJZ9 1412 aa38.2■■■■□ 3.71
GDNF-204ENST00000427982 NUP160Q12769 1436 aa38.2■■■■□ 3.71
GDNF-204ENST00000427982 SHROOM2Q13796 1616 aa38.09■■■■□ 3.69
GDNF-204ENST00000427982 ERCC6L2Q5T890 1561 aa38.06■■■■□ 3.68
GDNF-204ENST00000427982 TRHP20396 242 aaPredicted RBP37.88■■■■□ 3.65
GDNF-204ENST00000427982 RUSC2Q8N2Y8 1516 aa37.87■■■■□ 3.65
GDNF-204ENST00000427982 CUL7Q14999 1698 aa37.82■■■■□ 3.64
GDNF-204ENST00000427982 KIF27Q86VH2 1401 aa37.8■■■■□ 3.64
GDNF-204ENST00000427982 IGF1RP08069 1367 aa37.78■■■■□ 3.64
Retrieved 100 of 20,778 RNA–protein pairs in 31.6 ms