Protein–RNA interactions for Protein: Q9BUN5

CCDC28B, Coiled-coil domain-containing protein 28B, humanhuman

Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28BQ9BUN5 OXT-201ENST00000217386 513 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
CCDC28BQ9BUN5 ZHX1-C8orf76-201ENST00000357082 1257 ntAPPRIS P2 TSL 2 BASIC16.3■□□□□ 0.2
CCDC28BQ9BUN5 GLRX2-201ENST00000367439 701 ntAPPRIS ALT2 TSL 1 (best) BASIC16.3■□□□□ 0.2
CCDC28BQ9BUN5 PSMB8-202ENST00000374882 1124 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
CCDC28BQ9BUN5 FAM239B-201ENST00000381106 1099 ntTSL 2 BASIC16.3■□□□□ 0.2
CCDC28BQ9BUN5 AC005521.1-201ENST00000393351 872 ntBASIC16.3■□□□□ 0.2
CCDC28BQ9BUN5 GGT1-208ENST00000404920 657 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
CCDC28BQ9BUN5 MMP24-AS1-201ENST00000424358 867 ntAPPRIS P1 TSL 2 BASIC16.3■□□□□ 0.2
CCDC28BQ9BUN5 AP000344.1-201ENST00000454268 641 ntTSL 5 BASIC16.3■□□□□ 0.2
CCDC28BQ9BUN5 AP000344.1-202ENST00000457193 586 ntTSL 4 BASIC16.3■□□□□ 0.2
CCDC28BQ9BUN5 GGTLC2-203ENST00000480559 657 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
CCDC28BQ9BUN5 NUTF2-205ENST00000568396 1179 ntAPPRIS P1 TSL 3 BASIC16.3■□□□□ 0.2
CCDC28BQ9BUN5 PSMD8-202ENST00000585598 541 ntTSL 5 BASIC16.3■□□□□ 0.2
CCDC28BQ9BUN5 TERC-201ENST00000602385 541 ntBASIC16.3■□□□□ 0.2
CCDC28BQ9BUN5 COL4A1-204ENST00000543140 2547 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
CCDC28BQ9BUN5 SCP2-201ENST00000371509 1889 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
CCDC28BQ9BUN5 ADRA2A-201ENST00000280155 3745 ntAPPRIS P1 BASIC16.3■□□□□ 0.2
CCDC28BQ9BUN5 MEIS3-206ENST00000559524 1828 ntAPPRIS P3 TSL 2 BASIC16.3■□□□□ 0.2
CCDC28BQ9BUN5 AC012485.3-201ENST00000637634 2424 ntTSL 5 BASIC16.3■□□□□ 0.2
CCDC28BQ9BUN5 MPPE1-211ENST00000588072 4236 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
CCDC28BQ9BUN5 COG5-203ENST00000393603 5418 ntAPPRIS ALT2 TSL 1 (best) BASIC16.3■□□□□ 0.2
CCDC28BQ9BUN5 CLPTM1L-209ENST00000507807 1740 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
CCDC28BQ9BUN5 NFIX-210ENST00000588228 1692 ntTSL 2 BASIC16.3■□□□□ 0.2
CCDC28BQ9BUN5 MAU2-201ENST00000262815 4994 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
CCDC28BQ9BUN5 JPH4-202ENST00000397118 4386 ntAPPRIS P2 TSL 1 (best) BASIC16.3■□□□□ 0.2
CCDC28BQ9BUN5 MYZAP-202ENST00000380565 2181 ntAPPRIS ALT2 TSL 1 (best) BASIC16.3■□□□□ 0.2
CCDC28BQ9BUN5 GHDC-201ENST00000301671 2650 ntAPPRIS P1 TSL 2 BASIC16.3■□□□□ 0.2
CCDC28BQ9BUN5 RPAP3-203ENST00000432584 2133 ntTSL 2 BASIC16.3■□□□□ 0.2
CCDC28BQ9BUN5 NFIC-210ENST00000590282 1558 ntTSL 2 BASIC16.3■□□□□ 0.2
CCDC28BQ9BUN5 SNX9-201ENST00000392185 4198 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
CCDC28BQ9BUN5 NUS1-201ENST00000368494 4676 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
CCDC28BQ9BUN5 PCDHGB2-202ENST00000622527 2588 ntAPPRIS P1 BASIC16.3■□□□□ 0.2
CCDC28BQ9BUN5 CPEB2-201ENST00000259997 5612 ntAPPRIS ALT2 TSL 5 BASIC16.3■□□□□ 0.2
CCDC28BQ9BUN5 C11orf68-203ENST00000530188 1528 ntAPPRIS ALT2 BASIC16.29■□□□□ 0.2
CCDC28BQ9BUN5 HLA-DQB2-231ENST00000435145 2026 ntBASIC16.29■□□□□ 0.2
CCDC28BQ9BUN5 SLC22A23-210ENST00000490273 2043 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
CCDC28BQ9BUN5 C5orf30-202ENST00000510890 2933 ntAPPRIS P1 TSL 2 BASIC16.29■□□□□ 0.2
CCDC28BQ9BUN5 TEX19-201ENST00000333437 1936 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
CCDC28BQ9BUN5 CDK10-208ENST00000505473 1424 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
CCDC28BQ9BUN5 INHBB-201ENST00000295228 3204 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
CCDC28BQ9BUN5 FBXL12-206ENST00000588922 1843 ntTSL 2 BASIC16.29■□□□□ 0.2
CCDC28BQ9BUN5 ZC3H7B-201ENST00000352645 5909 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
CCDC28BQ9BUN5 AC006449.6-201ENST00000612330 2296 ntBASIC16.29■□□□□ 0.2
CCDC28BQ9BUN5 CDKN2AIP-203ENST00000504169 2721 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
CCDC28BQ9BUN5 RELT-201ENST00000064780 3535 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
CCDC28BQ9BUN5 PABPC4-201ENST00000372856 3016 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
CCDC28BQ9BUN5 ATP6V0D1-201ENST00000290949 1716 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
CCDC28BQ9BUN5 P3H1-202ENST00000296388 2585 ntAPPRIS P3 TSL 1 (best) BASIC16.29■□□□□ 0.2
CCDC28BQ9BUN5 GATA4-201ENST00000335135 3414 ntAPPRIS P3 TSL 5 BASIC16.29■□□□□ 0.2
CCDC28BQ9BUN5 SNRPA1-201ENST00000254193 1055 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
CCDC28BQ9BUN5 PTCRA-201ENST00000304672 1080 ntAPPRIS P3 TSL 1 (best) BASIC16.29■□□□□ 0.2
CCDC28BQ9BUN5 MPIG6B-202ENST00000375805 668 ntAPPRIS ALT2 TSL 1 (best) BASIC16.29■□□□□ 0.2
CCDC28BQ9BUN5 LINC00982-205ENST00000420957 435 ntBASIC16.29■□□□□ 0.2
CCDC28BQ9BUN5 PTCRA-202ENST00000441198 1005 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
CCDC28BQ9BUN5 SRP19-202ENST00000445150 833 ntTSL 2 BASIC16.29■□□□□ 0.2
CCDC28BQ9BUN5 PTCRA-203ENST00000446507 759 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
CCDC28BQ9BUN5 AF250324.1-201ENST00000506276 703 ntTSL 3 BASIC16.29■□□□□ 0.2
CCDC28BQ9BUN5 AC139749.1-201ENST00000534584 1094 ntTSL 3 BASIC16.29■□□□□ 0.2
CCDC28BQ9BUN5 ABO-202ENST00000538324 1147 ntAPPRIS P5 TSL 5 BASIC16.29■□□□□ 0.2
CCDC28BQ9BUN5 ABR-204ENST00000543210 1049 ntTSL 2 BASIC16.29■□□□□ 0.2
CCDC28BQ9BUN5 ANKRD34C-AS1-205ENST00000560452 576 ntTSL 4 BASIC16.29■□□□□ 0.2
CCDC28BQ9BUN5 ABR-217ENST00000572441 563 ntTSL 4 BASIC16.29■□□□□ 0.2
CCDC28BQ9BUN5 AC004771.4-201ENST00000576752 474 ntTSL 5 BASIC16.29■□□□□ 0.2
CCDC28BQ9BUN5 AC008105.3-202ENST00000585471 1077 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
CCDC28BQ9BUN5 AC004817.3-201ENST00000602957 2129 ntBASIC16.29■□□□□ 0.2
CCDC28BQ9BUN5 Metazoa_SRP.104-201ENST00000622099 280 ntBASIC16.29■□□□□ 0.2
CCDC28BQ9BUN5 CCDC183-201ENST00000338005 1671 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
CCDC28BQ9BUN5 CALHM3-201ENST00000369783 1652 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
CCDC28BQ9BUN5 SERPINB6-201ENST00000335686 1604 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
CCDC28BQ9BUN5 SLC39A8-202ENST00000394833 3238 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
CCDC28BQ9BUN5 GRID2IP-201ENST00000435185 3215 ntTSL 5 BASIC16.29■□□□□ 0.2
CCDC28BQ9BUN5 ZNF563-201ENST00000293725 2754 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
CCDC28BQ9BUN5 FUT2-201ENST00000391876 1593 ntAPPRIS P1 TSL 2 BASIC16.29■□□□□ 0.2
CCDC28BQ9BUN5 XKR7-201ENST00000562532 7844 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
CCDC28BQ9BUN5 RB1CC1-201ENST00000025008 6635 ntAPPRIS P3 TSL 1 (best) BASIC16.29■□□□□ 0.2
CCDC28BQ9BUN5 KIFC1-211ENST00000428849 2706 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
CCDC28BQ9BUN5 TMUB2-213ENST00000589856 1505 ntTSL 2 BASIC16.29■□□□□ 0.2
CCDC28BQ9BUN5 BCRP2-201ENST00000398241 1842 ntTSL 2 BASIC16.29■□□□□ 0.2
CCDC28BQ9BUN5 LYPLA1-214ENST00000618741 2526 ntTSL 5 BASIC16.28■□□□□ 0.2
CCDC28BQ9BUN5 INPP5K-201ENST00000320345 2880 ntTSL 5 BASIC16.28■□□□□ 0.2
CCDC28BQ9BUN5 BCAT2-209ENST00000599246 1449 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
CCDC28BQ9BUN5 SNX33P1-201ENST00000592116 1762 ntBASIC16.28■□□□□ 0.2
CCDC28BQ9BUN5 XXYLT1-205ENST00000437101 2149 ntTSL 2 BASIC16.28■□□□□ 0.2
CCDC28BQ9BUN5 ARFGAP1-210ENST00000519273 3176 ntTSL 2 BASIC16.28■□□□□ 0.2
CCDC28BQ9BUN5 PRPS1-204ENST00000372435 2073 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
CCDC28BQ9BUN5 LINC00887-203ENST00000429578 1717 ntTSL 2 BASIC16.28■□□□□ 0.2
CCDC28BQ9BUN5 AC243591.1-201ENST00000452967 1364 ntBASIC16.28■□□□□ 0.2
CCDC28BQ9BUN5 ZXDC-202ENST00000389709 3405 ntAPPRIS P4 TSL 1 (best) BASIC16.28■□□□□ 0.2
CCDC28BQ9BUN5 PDS5A-201ENST00000303538 7176 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
CCDC28BQ9BUN5 DCAF11-217ENST00000559115 2711 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
CCDC28BQ9BUN5 PTPRN2-201ENST00000389413 4723 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
CCDC28BQ9BUN5 SLC39A6-202ENST00000440549 1657 ntAPPRIS ALT2 TSL 1 (best) BASIC16.28■□□□□ 0.2
CCDC28BQ9BUN5 SCARB1-202ENST00000339570 3329 ntTSL 5 BASIC16.28■□□□□ 0.2
CCDC28BQ9BUN5 ARFGAP1-220ENST00000547204 1327 ntTSL 2 BASIC16.28■□□□□ 0.2
CCDC28BQ9BUN5 INPP5K-204ENST00000421807 2988 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
CCDC28BQ9BUN5 ZNF197-203ENST00000383744 1989 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
CCDC28BQ9BUN5 CHMP1A-202ENST00000535997 2295 ntTSL 2 BASIC16.28■□□□□ 0.2
CCDC28BQ9BUN5 PRKD2-214ENST00000600194 2923 ntAPPRIS ALT2 TSL 2 BASIC16.28■□□□□ 0.2
CCDC28BQ9BUN5 MON2-203ENST00000546600 6130 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
CCDC28BQ9BUN5 METTL5-201ENST00000260953 1010 ntAPPRIS P2 TSL 1 (best) BASIC16.28■□□□□ 0.2
Retrieved 100 of 98,524 protein–RNA pairs in 52.9 ms