Protein–RNA interactions for Protein: Q4VC31

CCDC58, Coiled-coil domain-containing protein 58, humanhuman

Predictions only

Length 144 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC58Q4VC31 CALCR-207ENST00000426151 1741 ntAPPRIS P3 TSL 1 (best) BASIC15.03■□□□□ -0
CCDC58Q4VC31 PHLDB1-202ENST00000361417 5753 ntAPPRIS P3 TSL 1 (best) BASIC15.03■□□□□ -0
CCDC58Q4VC31 CLU-215ENST00000523500 2381 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
CCDC58Q4VC31 VPS16-203ENST00000380469 2318 ntTSL 2 BASIC15.03■□□□□ -0
CCDC58Q4VC31 GSN-206ENST00000394353 2311 ntTSL 2 BASIC15.03■□□□□ -0
CCDC58Q4VC31 CLDN7-201ENST00000360325 1542 ntAPPRIS P1 TSL 1 (best) BASIC15.02■□□□□ -0
CCDC58Q4VC31 SPHK2-210ENST00000599748 2683 ntAPPRIS ALT2 TSL 1 (best) BASIC15.02■□□□□ -0
CCDC58Q4VC31 RASGEF1C-206ENST00000522500 2055 ntTSL 2 BASIC15.02■□□□□ -0
CCDC58Q4VC31 CHGA-202ENST00000334654 1474 ntTSL 1 (best) BASIC15.02■□□□□ -0
CCDC58Q4VC31 IFNL4-204ENST00000634967 1493 ntAPPRIS ALT2 TSL 1 (best) BASIC15.02■□□□□ -0
CCDC58Q4VC31 BBS2-218ENST00000568104 2623 ntTSL 5 BASIC15.02■□□□□ -0
CCDC58Q4VC31 NOMO2-203ENST00000543392 3765 ntAPPRIS ALT2 TSL 1 (best) BASIC15.02■□□□□ -0
CCDC58Q4VC31 CRB3-203ENST00000598494 1443 ntAPPRIS ALT2 TSL 2 BASIC15.02■□□□□ -0
CCDC58Q4VC31 PHTF1-202ENST00000369598 3000 ntTSL 5 BASIC15.02■□□□□ -0
CCDC58Q4VC31 NR2C2-201ENST00000323373 2406 ntTSL 1 (best) BASIC15.02■□□□□ -0
CCDC58Q4VC31 FTSJ1-202ENST00000348411 1892 ntAPPRIS P4 TSL 1 (best) BASIC15.02■□□□□ -0
CCDC58Q4VC31 GPBAR1-201ENST00000479077 1869 ntAPPRIS P1 TSL 2 BASIC15.02■□□□□ -0
CCDC58Q4VC31 ARC-201ENST00000356613 2948 ntAPPRIS P1 TSL 1 (best) BASIC15.02■□□□□ -0
CCDC58Q4VC31 ZACN-201ENST00000334586 1335 ntAPPRIS P1 TSL 1 (best) BASIC15.02■□□□□ -0
CCDC58Q4VC31 DISC1-209ENST00000439617 7059 ntAPPRIS ALT2 TSL 5 BASIC15.02■□□□□ -0
CCDC58Q4VC31 CACFD1-206ENST00000540581 2880 ntAPPRIS ALT2 TSL 2 BASIC15.02■□□□□ -0
CCDC58Q4VC31 NR2C1-203ENST00000393101 1822 ntTSL 1 (best) BASIC15.02■□□□□ -0
CCDC58Q4VC31 PCCB-209ENST00000469217 1841 ntAPPRIS ALT2 TSL 2 BASIC15.02■□□□□ -0
CCDC58Q4VC31 TOMM70-201ENST00000284320 4409 ntAPPRIS P1 TSL 1 (best) BASIC15.02■□□□□ -0
CCDC58Q4VC31 FES-204ENST00000414248 2327 ntTSL 2 BASIC15.02■□□□□ -0
CCDC58Q4VC31 FGF8-201ENST00000320185 799 ntAPPRIS P4 TSL 1 (best) BASIC15.02■□□□□ -0
CCDC58Q4VC31 CCDC107-201ENST00000327351 804 ntAPPRIS ALT2 TSL 1 (best) BASIC15.02■□□□□ -0
CCDC58Q4VC31 S100A3-201ENST00000368712 579 ntAPPRIS P1 TSL 3 BASIC15.02■□□□□ -0
CCDC58Q4VC31 CMTM2-202ENST00000379486 904 ntAPPRIS ALT2 TSL 1 (best) BASIC15.02■□□□□ -0
CCDC58Q4VC31 RPL8-202ENST00000394920 965 ntAPPRIS P1 TSL 1 (best) BASIC15.02■□□□□ -0
CCDC58Q4VC31 SMIM11A-202ENST00000399295 1074 ntAPPRIS P1 TSL 2 BASIC15.02■□□□□ -0
CCDC58Q4VC31 C2orf82-202ENST00000409230 663 ntAPPRIS P2 TSL 3 BASIC15.02■□□□□ -0
CCDC58Q4VC31 AC113347.1-201ENST00000413321 391 ntBASIC15.02■□□□□ -0
CCDC58Q4VC31 AC117947.1-201ENST00000427448 529 ntBASIC15.02■□□□□ -0
CCDC58Q4VC31 AL137013.1-201ENST00000432946 1228 ntBASIC15.02■□□□□ -0
CCDC58Q4VC31 GRP-204ENST00000529320 824 ntAPPRIS ALT2 TSL 1 (best) BASIC15.02■□□□□ -0
CCDC58Q4VC31 AC009533.2-201ENST00000543664 586 ntBASIC15.02■□□□□ -0
CCDC58Q4VC31 ELAC2-212ENST00000578071 579 ntTSL 4 BASIC15.02■□□□□ -0
CCDC58Q4VC31 AC011840.4-201ENST00000578471 627 ntBASIC15.02■□□□□ -0
CCDC58Q4VC31 YIPF2-209ENST00000590329 958 ntTSL 5 BASIC15.02■□□□□ -0
CCDC58Q4VC31 SMIM11B-207ENST00000624758 1074 ntAPPRIS P1 TSL 2 BASIC15.02■□□□□ -0
CCDC58Q4VC31 ZNF496-201ENST00000294753 5336 ntAPPRIS P1 TSL 1 (best) BASIC15.02□□□□□ -0.01
CCDC58Q4VC31 PATZ1-204ENST00000405309 3711 ntTSL 1 (best) BASIC15.02□□□□□ -0.01
CCDC58Q4VC31 KREMEN1-201ENST00000327813 2719 ntAPPRIS P3 TSL 2 BASIC15.02□□□□□ -0.01
CCDC58Q4VC31 CYP46A1-201ENST00000261835 2181 ntAPPRIS P1 TSL 1 (best) BASIC15.02□□□□□ -0.01
CCDC58Q4VC31 RTN4RL1-201ENST00000331238 3625 ntAPPRIS P1 TSL 1 (best) BASIC15.02□□□□□ -0.01
CCDC58Q4VC31 SGCE-206ENST00000445866 1666 ntTSL 5 BASIC15.02□□□□□ -0.01
CCDC58Q4VC31 COTL1-203ENST00000564057 1677 ntTSL 5 BASIC15.02□□□□□ -0.01
CCDC58Q4VC31 ZNF19-208ENST00000565637 2612 ntTSL 2 BASIC15.02□□□□□ -0.01
CCDC58Q4VC31 PDXK-202ENST00000327574 2583 ntTSL 2 BASIC15.02□□□□□ -0.01
CCDC58Q4VC31 LINC00895-201ENST00000629028 1637 ntBASIC15.02□□□□□ -0.01
CCDC58Q4VC31 PTPRN2-201ENST00000389413 4723 ntTSL 1 (best) BASIC15.02□□□□□ -0.01
CCDC58Q4VC31 AL928970.1-201ENST00000422679 2923 ntTSL 5 BASIC15.02□□□□□ -0.01
CCDC58Q4VC31 ZNF628-203ENST00000598519 3847 ntAPPRIS P2 TSL 1 (best) BASIC15.02□□□□□ -0.01
CCDC58Q4VC31 PATZ1-202ENST00000266269 3781 ntAPPRIS P1 TSL 1 (best) BASIC15.02□□□□□ -0.01
CCDC58Q4VC31 SRSF2-203ENST00000392485 2885 ntAPPRIS P1 TSL 1 (best) BASIC15.02□□□□□ -0.01
CCDC58Q4VC31 ADAM9-206ENST00000481513 2387 ntTSL 2 BASIC15.02□□□□□ -0.01
CCDC58Q4VC31 THSD1-202ENST00000349258 3189 ntTSL 1 (best) BASIC15.01□□□□□ -0.01
CCDC58Q4VC31 SEPT8-204ENST00000378699 2289 ntTSL 5 BASIC15.01□□□□□ -0.01
CCDC58Q4VC31 GTDC1-219ENST00000542155 2677 ntAPPRIS P1 TSL 2 BASIC15.01□□□□□ -0.01
CCDC58Q4VC31 KCNC1-201ENST00000265969 4295 ntAPPRIS P1 TSL 5 BASIC15.01□□□□□ -0.01
CCDC58Q4VC31 AL355315.1-201ENST00000370649 1848 ntAPPRIS P1 TSL 2 BASIC15.01□□□□□ -0.01
CCDC58Q4VC31 AC132938.5-201ENST00000624980 1813 ntBASIC15.01□□□□□ -0.01
CCDC58Q4VC31 TRIM13-204ENST00000420995 2607 ntAPPRIS P3 TSL 1 (best) BASIC15.01□□□□□ -0.01
CCDC58Q4VC31 CARD14-202ENST00000570421 2607 ntTSL 1 (best) BASIC15.01□□□□□ -0.01
CCDC58Q4VC31 PXN-201ENST00000228307 3785 ntAPPRIS P4 TSL 1 (best) BASIC15.01□□□□□ -0.01
CCDC58Q4VC31 TRAF6-201ENST00000348124 2558 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
CCDC58Q4VC31 GOLGA8DP-202ENST00000341390 2184 ntBASIC15.01□□□□□ -0.01
CCDC58Q4VC31 PPEF2-207ENST00000621010 1797 ntTSL 1 (best) BASIC15.01□□□□□ -0.01
CCDC58Q4VC31 XPO1-201ENST00000401558 4915 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
CCDC58Q4VC31 NRIP1-203ENST00000400202 7671 ntAPPRIS P1 TSL 5 BASIC15.01□□□□□ -0.01
CCDC58Q4VC31 AL021920.2-201ENST00000624828 1351 ntBASIC15.01□□□□□ -0.01
CCDC58Q4VC31 NTRK2-205ENST00000376208 8178 ntTSL 1 (best) BASIC15.01□□□□□ -0.01
CCDC58Q4VC31 CLN6-202ENST00000538696 1343 ntTSL 2 BASIC15.01□□□□□ -0.01
CCDC58Q4VC31 ONECUT1-201ENST00000305901 2092 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
CCDC58Q4VC31 EDC3-202ENST00000426797 2093 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
CCDC58Q4VC31 GCAT-202ENST00000323205 1656 ntTSL 2 BASIC15.01□□□□□ -0.01
CCDC58Q4VC31 CEACAM21-203ENST00000407170 1691 ntTSL 2 BASIC15.01□□□□□ -0.01
CCDC58Q4VC31 TRIM60-203ENST00000508504 1674 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
CCDC58Q4VC31 PYDC1-201ENST00000302964 813 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
CCDC58Q4VC31 HES7-201ENST00000317814 678 ntAPPRIS P3 TSL 1 (best) BASIC15.01□□□□□ -0.01
CCDC58Q4VC31 ISG15-201ENST00000379389 711 ntAPPRIS P2 TSL 1 (best) BASIC15.01□□□□□ -0.01
CCDC58Q4VC31 PRICKLE4-202ENST00000394260 1035 ntAPPRIS ALT2 TSL 2 BASIC15.01□□□□□ -0.01
CCDC58Q4VC31 PRICKLE4-203ENST00000394263 1155 ntAPPRIS P2 TSL 5 BASIC15.01□□□□□ -0.01
CCDC58Q4VC31 CLDN7-202ENST00000397317 1228 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
CCDC58Q4VC31 KLF4P1-201ENST00000412782 1185 ntBASIC15.01□□□□□ -0.01
CCDC58Q4VC31 KRT18P38-201ENST00000449496 1282 ntBASIC15.01□□□□□ -0.01
CCDC58Q4VC31 MHENCR-202ENST00000449500 801 ntTSL 2 BASIC15.01□□□□□ -0.01
CCDC58Q4VC31 MEG3-211ENST00000452514 461 ntTSL 3 BASIC15.01□□□□□ -0.01
CCDC58Q4VC31 AZIN1-AS1-215ENST00000522939 644 ntTSL 2 BASIC15.01□□□□□ -0.01
CCDC58Q4VC31 SHBG-211ENST00000574539 938 ntTSL 1 (best) BASIC15.01□□□□□ -0.01
CCDC58Q4VC31 AC020558.2-201ENST00000582325 795 ntTSL 3 BASIC15.01□□□□□ -0.01
CCDC58Q4VC31 AC090616.6-201ENST00000582640 721 ntBASIC15.01□□□□□ -0.01
CCDC58Q4VC31 AL592071.1-201ENST00000611956 408 ntBASIC15.01□□□□□ -0.01
CCDC58Q4VC31 AD001527.2-201ENST00000622994 785 ntBASIC15.01□□□□□ -0.01
CCDC58Q4VC31 USP43-201ENST00000285199 4169 ntAPPRIS P3 TSL 1 (best) BASIC15.01□□□□□ -0.01
CCDC58Q4VC31 TEAD4-201ENST00000358409 1637 ntTSL 1 (best) BASIC15.01□□□□□ -0.01
CCDC58Q4VC31 ALG1-204ENST00000588623 2671 ntTSL 1 (best) BASIC15.01□□□□□ -0.01
CCDC58Q4VC31 GAL3ST1-203ENST00000402321 1908 ntAPPRIS P1 TSL 2 BASIC15.01□□□□□ -0.01
CCDC58Q4VC31 R3HDM2-201ENST00000347140 4331 ntAPPRIS P2 TSL 1 (best) BASIC15.01□□□□□ -0.01
Retrieved 100 of 98,524 protein–RNA pairs in 32.5 ms