Protein–RNA interactions for Protein: Q9BUN5

CCDC28B, Coiled-coil domain-containing protein 28B, humanhuman

Predictions only

Length 200 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28BQ9BUN5 DUSP18-206ENST00000407308 1978 ntAPPRIS P1 TSL 5 BASIC16.33■□□□□ 0.2
CCDC28BQ9BUN5 MRFAP1-205ENST00000617365 2112 ntTSL 5 BASIC16.33■□□□□ 0.2
CCDC28BQ9BUN5 HNRNPU-205ENST00000444376 6827 ntAPPRIS P3 TSL 1 (best) BASIC16.33■□□□□ 0.2
CCDC28BQ9BUN5 TRIM27-202ENST00000377199 2967 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
CCDC28BQ9BUN5 CRAMP1-201ENST00000293925 7671 ntAPPRIS P1 TSL 5 BASIC16.32■□□□□ 0.2
CCDC28BQ9BUN5 STK24-203ENST00000397517 4578 ntTSL 2 BASIC16.32■□□□□ 0.2
CCDC28BQ9BUN5 MAN1C1-203ENST00000374332 4641 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
CCDC28BQ9BUN5 MAN1C1-208ENST00000611903 4647 ntTSL 5 BASIC16.32■□□□□ 0.2
CCDC28BQ9BUN5 PELI2-201ENST00000267460 5909 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
CCDC28BQ9BUN5 ORAOV1-201ENST00000279147 2478 ntAPPRIS P2 TSL 1 (best) BASIC16.32■□□□□ 0.2
CCDC28BQ9BUN5 PTS-201ENST00000280362 935 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
CCDC28BQ9BUN5 TSC22D4-201ENST00000300181 2383 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
CCDC28BQ9BUN5 AIFM2-201ENST00000307864 3243 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
CCDC28BQ9BUN5 EED-202ENST00000327320 2033 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
CCDC28BQ9BUN5 CSF3-202ENST00000331769 1673 ntAPPRIS ALT2 TSL 1 (best) BASIC16.32■□□□□ 0.2
CCDC28BQ9BUN5 SPIN2B-202ENST00000333933 1258 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
CCDC28BQ9BUN5 RFWD2-204ENST00000367669 3033 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
CCDC28BQ9BUN5 F3-202ENST00000370207 1879 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
CCDC28BQ9BUN5 RPL36-202ENST00000394580 556 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
CCDC28BQ9BUN5 HECTD1-201ENST00000399332 9134 ntAPPRIS P1 TSL 5 BASIC16.32■□□□□ 0.2
CCDC28BQ9BUN5 PTPRN2-204ENST00000404321 1374 ntTSL 5 BASIC16.32■□□□□ 0.2
CCDC28BQ9BUN5 LINC01770-202ENST00000430109 510 ntTSL 3 BASIC16.32■□□□□ 0.2
CCDC28BQ9BUN5 AC078883.2-201ENST00000441212 558 ntTSL 3 BASIC16.32■□□□□ 0.2
CCDC28BQ9BUN5 NLE1-202ENST00000442241 2588 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
CCDC28BQ9BUN5 SHISA5-209ENST00000443308 1933 ntTSL 2 BASIC16.32■□□□□ 0.2
CCDC28BQ9BUN5 AKR1B15-202ENST00000457545 1621 ntAPPRIS P1 TSL 5 BASIC16.32■□□□□ 0.2
CCDC28BQ9BUN5 PSMD6-210ENST00000492933 1495 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
CCDC28BQ9BUN5 KRT8P26-201ENST00000534154 1276 ntBASIC16.32■□□□□ 0.2
CCDC28BQ9BUN5 KDM4B-203ENST00000536461 5027 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
CCDC28BQ9BUN5 ZNF580-202ENST00000543039 1707 ntAPPRIS P1 BASIC16.32■□□□□ 0.2
CCDC28BQ9BUN5 TK2-213ENST00000563369 882 ntTSL 5 BASIC16.32■□□□□ 0.2
CCDC28BQ9BUN5 AC007220.1-201ENST00000572466 1055 ntTSL 3 BASIC16.32■□□□□ 0.2
CCDC28BQ9BUN5 NR2E3-203ENST00000621098 2064 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
CCDC28BQ9BUN5 AC006011.2-201ENST00000621313 1158 ntBASIC16.32■□□□□ 0.2
CCDC28BQ9BUN5 AC148477.5-201ENST00000625164 1645 ntBASIC16.32■□□□□ 0.2
CCDC28BQ9BUN5 ASAH1-231ENST00000636577 2129 ntTSL 5 BASIC16.32■□□□□ 0.2
CCDC28BQ9BUN5 PRPF40B-201ENST00000261897 3602 ntAPPRIS ALT2 TSL 1 (best) BASIC16.32■□□□□ 0.2
CCDC28BQ9BUN5 ABCG5-202ENST00000405322 2896 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
CCDC28BQ9BUN5 DAP-201ENST00000230895 2339 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
CCDC28BQ9BUN5 ARNTL2-208ENST00000544915 6785 ntAPPRIS ALT2 TSL 5 BASIC16.31■□□□□ 0.2
CCDC28BQ9BUN5 RAP1GDS1-203ENST00000380158 2085 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
CCDC28BQ9BUN5 DGKZ-202ENST00000343674 3816 ntAPPRIS P3 TSL 2 BASIC16.31■□□□□ 0.2
CCDC28BQ9BUN5 SP100-204ENST00000409341 1898 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
CCDC28BQ9BUN5 C11orf80-203ENST00000525449 1821 ntAPPRIS ALT2 TSL 1 (best) BASIC16.31■□□□□ 0.2
CCDC28BQ9BUN5 GGT4P-201ENST00000623672 1708 ntBASIC16.31■□□□□ 0.2
CCDC28BQ9BUN5 ACP5-212ENST00000592828 1699 ntAPPRIS P1 TSL 5 BASIC16.31■□□□□ 0.2
CCDC28BQ9BUN5 LDB3-208ENST00000623007 1664 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
CCDC28BQ9BUN5 CALU-205ENST00000535011 3210 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
CCDC28BQ9BUN5 RBM47-202ENST00000381793 4816 ntAPPRIS ALT1 TSL 2 BASIC16.31■□□□□ 0.2
CCDC28BQ9BUN5 TMEM101-201ENST00000206380 1536 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
CCDC28BQ9BUN5 SKP2-201ENST00000274254 1537 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
CCDC28BQ9BUN5 PEX13-204ENST00000444100 1533 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
CCDC28BQ9BUN5 FBXO46-201ENST00000317683 3001 ntAPPRIS P1 TSL 2 BASIC16.31■□□□□ 0.2
CCDC28BQ9BUN5 ZFAND6-207ENST00000558494 1472 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
CCDC28BQ9BUN5 TP73-AS1-210ENST00000637775 1455 ntBASIC16.31■□□□□ 0.2
CCDC28BQ9BUN5 LINC00599-203ENST00000519461 2922 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
CCDC28BQ9BUN5 MANSC1-202ENST00000535902 5831 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
CCDC28BQ9BUN5 LENG8-209ENST00000616932 2825 ntAPPRIS ALT2 TSL 5 BASIC16.31■□□□□ 0.2
CCDC28BQ9BUN5 TNFRSF13B-201ENST00000261652 1357 ntAPPRIS P2 TSL 1 (best) BASIC16.31■□□□□ 0.2
CCDC28BQ9BUN5 MTA1-202ENST00000405646 2709 ntAPPRIS ALT2 TSL 5 BASIC16.31■□□□□ 0.2
CCDC28BQ9BUN5 IDH2-201ENST00000330062 2694 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
CCDC28BQ9BUN5 ADAMTS1-201ENST00000284984 5191 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
CCDC28BQ9BUN5 PRDX5-201ENST00000265462 893 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
CCDC28BQ9BUN5 ABCD1-202ENST00000370129 1016 ntTSL 2 BASIC16.31■□□□□ 0.2
CCDC28BQ9BUN5 CENPM-203ENST00000402338 1002 ntTSL 2 BASIC16.31■□□□□ 0.2
CCDC28BQ9BUN5 PLCB1-204ENST00000404098 1260 ntTSL 3 BASIC16.31■□□□□ 0.2
CCDC28BQ9BUN5 B4GALT1-AS1-202ENST00000442432 843 ntTSL 2 BASIC16.31■□□□□ 0.2
CCDC28BQ9BUN5 AC091607.1-201ENST00000490318 1060 ntBASIC16.31■□□□□ 0.2
CCDC28BQ9BUN5 AC012213.1-202ENST00000523422 449 ntTSL 3 BASIC16.31■□□□□ 0.2
CCDC28BQ9BUN5 TMEM218-206ENST00000527766 812 ntAPPRIS P1 TSL 3 BASIC16.31■□□□□ 0.2
CCDC28BQ9BUN5 BVES-AS1-203ENST00000580511 853 ntTSL 5 BASIC16.31■□□□□ 0.2
CCDC28BQ9BUN5 AC011498.5-201ENST00000592027 486 ntBASIC16.31■□□□□ 0.2
CCDC28BQ9BUN5 C18orf21-207ENST00000610527 1059 ntTSL 2 BASIC16.31■□□□□ 0.2
CCDC28BQ9BUN5 mascRNA-menRNA.2-201ENST00000616984 58 ntBASIC16.31■□□□□ 0.2
CCDC28BQ9BUN5 C18orf21-208ENST00000618334 856 ntTSL 3 BASIC16.31■□□□□ 0.2
CCDC28BQ9BUN5 AC097493.4-201ENST00000641197 219 ntBASIC16.31■□□□□ 0.2
CCDC28BQ9BUN5 AXIN2-202ENST00000375702 2541 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
CCDC28BQ9BUN5 CLIP4-201ENST00000320081 4293 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
CCDC28BQ9BUN5 AHCY-201ENST00000217426 2143 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
CCDC28BQ9BUN5 SERTAD1-201ENST00000357949 2114 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
CCDC28BQ9BUN5 NPNT-201ENST00000305572 3003 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
CCDC28BQ9BUN5 PPP6R1-203ENST00000587283 2953 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
CCDC28BQ9BUN5 TMC7-201ENST00000304381 3640 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
CCDC28BQ9BUN5 HIST1H2BN-204ENST00000612898 1723 ntAPPRIS P1 BASIC16.31■□□□□ 0.2
CCDC28BQ9BUN5 TMEM37-201ENST00000306406 1688 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
CCDC28BQ9BUN5 TERF1-201ENST00000276602 3268 ntAPPRIS ALT2 TSL 1 (best) BASIC16.3■□□□□ 0.2
CCDC28BQ9BUN5 HLA-F-216ENST00000259951 1635 ntAPPRIS P4 BASIC16.3■□□□□ 0.2
CCDC28BQ9BUN5 SLC27A5-201ENST00000263093 2361 ntAPPRIS P3 TSL 1 (best) BASIC16.3■□□□□ 0.2
CCDC28BQ9BUN5 MCHR2-201ENST00000281806 2368 ntAPPRIS P1 TSL 2 BASIC16.3■□□□□ 0.2
CCDC28BQ9BUN5 MYOG-201ENST00000241651 1528 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
CCDC28BQ9BUN5 CDC25B-204ENST00000379598 2990 ntTSL 2 BASIC16.3■□□□□ 0.2
CCDC28BQ9BUN5 FAM57B-201ENST00000279389 1481 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
CCDC28BQ9BUN5 EVC2-202ENST00000344408 4390 ntAPPRIS P3 TSL 1 (best) BASIC16.3■□□□□ 0.2
CCDC28BQ9BUN5 FAM222B-202ENST00000452648 2836 ntAPPRIS P1 TSL 2 BASIC16.3■□□□□ 0.2
CCDC28BQ9BUN5 DMTN-202ENST00000358242 2772 ntTSL 5 BASIC16.3■□□□□ 0.2
CCDC28BQ9BUN5 AQP8-201ENST00000219660 1359 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
CCDC28BQ9BUN5 ZFP28-201ENST00000301318 4096 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
CCDC28BQ9BUN5 AC097637.2-201ENST00000624096 1997 ntBASIC16.3■□□□□ 0.2
CCDC28BQ9BUN5 TRIM13-204ENST00000420995 2607 ntAPPRIS P3 TSL 1 (best) BASIC16.3■□□□□ 0.2
CCDC28BQ9BUN5 INTS4P1-201ENST00000438455 1935 ntBASIC16.3■□□□□ 0.2
Retrieved 100 of 98,524 protein–RNA pairs in 29.3 ms