Protein–RNA interactions for Protein: O15347

HMGB3, High mobility group protein B3, humanhuman

Known RBP Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3O15347 HAUS3-204ENST00000506763 3166 ntTSL 2 BASIC13.55□□□□□ -0.24
HMGB3O15347 C6orf106-203ENST00000374026 4232 ntAPPRIS ALT2 TSL 2 BASIC13.55□□□□□ -0.24
HMGB3O15347 SNHG10-201ENST00000500370 1531 ntTSL 2 BASIC13.55□□□□□ -0.24
HMGB3O15347 SLC39A8-202ENST00000394833 3238 ntAPPRIS P1 TSL 1 (best) BASIC13.55□□□□□ -0.24
HMGB3O15347 NTRK3-202ENST00000355254 2938 ntAPPRIS ALT2 TSL 5 BASIC13.55□□□□□ -0.24
HMGB3O15347 PLIN4-201ENST00000301286 6353 ntAPPRIS P2 TSL 5 BASIC13.55□□□□□ -0.24
HMGB3O15347 MAP7-207ENST00000616617 4326 ntAPPRIS ALT2 TSL 5 BASIC13.55□□□□□ -0.24
HMGB3O15347 GPN2-202ENST00000374135 4678 ntAPPRIS P1 TSL 1 (best) BASIC13.55□□□□□ -0.24
HMGB3O15347 MON1B-201ENST00000248248 6091 ntAPPRIS P1 TSL 1 (best) BASIC13.55□□□□□ -0.24
HMGB3O15347 HGNC:18790-203ENST00000433139 2254 ntAPPRIS P1 TSL 2 BASIC13.55□□□□□ -0.24
HMGB3O15347 FBXO24-206ENST00000468962 1901 ntTSL 2 BASIC13.55□□□□□ -0.24
HMGB3O15347 ABO-203ENST00000611156 1577 ntAPPRIS ALT2 TSL 5 BASIC13.55□□□□□ -0.24
HMGB3O15347 GPER1-206ENST00000617001 1900 ntTSL 5 BASIC13.55□□□□□ -0.24
HMGB3O15347 NPHP4-211ENST00000622020 3004 ntTSL 5 BASIC13.55□□□□□ -0.24
HMGB3O15347 DGAT2-202ENST00000376262 2324 ntTSL 1 (best) BASIC13.55□□□□□ -0.24
HMGB3O15347 NUP50-201ENST00000347635 5233 ntAPPRIS P1 TSL 1 (best) BASIC13.55□□□□□ -0.24
HMGB3O15347 WRB-201ENST00000333781 1616 ntAPPRIS P1 TSL 1 (best) BASIC13.55□□□□□ -0.24
HMGB3O15347 ICA1-208ENST00000407906 1615 ntTSL 1 (best) BASIC13.55□□□□□ -0.24
HMGB3O15347 CNOT8-204ENST00000517876 2708 ntAPPRIS P1 TSL 5 BASIC13.55□□□□□ -0.24
HMGB3O15347 NT5C-201ENST00000245552 954 ntAPPRIS P1 TSL 1 (best) BASIC13.55□□□□□ -0.24
HMGB3O15347 AL161452.1-201ENST00000415062 1117 ntTSL 1 (best) BASIC13.55□□□□□ -0.24
HMGB3O15347 HLA-L-209ENST00000420110 1011 ntBASIC13.55□□□□□ -0.24
HMGB3O15347 KRT8P12-201ENST00000468527 998 ntTSL 2 BASIC13.55□□□□□ -0.24
HMGB3O15347 H1FX-AS1-204ENST00000511998 917 ntTSL 5 BASIC13.55□□□□□ -0.24
HMGB3O15347 AC099518.3-201ENST00000564808 809 ntAPPRIS P5 TSL 4 BASIC13.55□□□□□ -0.24
HMGB3O15347 PML-205ENST00000395132 1738 ntTSL 1 (best) BASIC13.55□□□□□ -0.24
HMGB3O15347 ADM5-201ENST00000420022 1718 ntAPPRIS P1 TSL 1 (best) BASIC13.55□□□□□ -0.24
HMGB3O15347 SMARCD1-202ENST00000394963 3658 ntAPPRIS P1 TSL 1 (best) BASIC13.55□□□□□ -0.24
HMGB3O15347 ZBTB17-216ENST00000537142 2511 ntTSL 2 BASIC13.55□□□□□ -0.24
HMGB3O15347 PI16-201ENST00000373674 2190 ntAPPRIS P1 TSL 1 (best) BASIC13.55□□□□□ -0.24
HMGB3O15347 ITGB2-207ENST00000397854 2592 ntTSL 1 (best) BASIC13.55□□□□□ -0.24
HMGB3O15347 RIPK1-201ENST00000259808 4160 ntAPPRIS P1 TSL 5 BASIC13.55□□□□□ -0.24
HMGB3O15347 FHOD3-201ENST00000257209 4967 ntAPPRIS P3 TSL 1 (best) BASIC13.55□□□□□ -0.24
HMGB3O15347 AC022400.6-201ENST00000603027 5818 ntAPPRIS P5 TSL 2 BASIC13.55□□□□□ -0.24
HMGB3O15347 USP35-203ENST00000529308 4216 ntAPPRIS P1 TSL 5 BASIC13.55□□□□□ -0.24
HMGB3O15347 ZFAND4-203ENST00000374366 3821 ntTSL 1 (best) BASIC13.55□□□□□ -0.24
HMGB3O15347 KDM5B-203ENST00000367265 10345 ntAPPRIS P1 TSL 1 (best) BASIC13.55□□□□□ -0.24
HMGB3O15347 TMEM138-201ENST00000278826 1848 ntAPPRIS P1 TSL 1 (best) BASIC13.55□□□□□ -0.24
HMGB3O15347 GPS1-226ENST00000623691 1839 ntAPPRIS ALT1 TSL 5 BASIC13.55□□□□□ -0.24
HMGB3O15347 AC092338.2-201ENST00000568827 1415 ntBASIC13.55□□□□□ -0.24
HMGB3O15347 CD209-210ENST00000601951 1439 ntAPPRIS ALT2 TSL 1 (best) BASIC13.55□□□□□ -0.24
HMGB3O15347 KIAA1217-209ENST00000430453 5962 ntAPPRIS ALT2 TSL 5 BASIC13.55□□□□□ -0.24
HMGB3O15347 KIAA1217-211ENST00000458595 5977 ntAPPRIS ALT2 TSL 1 (best) BASIC13.55□□□□□ -0.24
HMGB3O15347 FOXP3-202ENST00000376199 2274 ntTSL 2 BASIC13.55□□□□□ -0.24
HMGB3O15347 CD151-203ENST00000397421 1486 ntAPPRIS P2 TSL 1 (best) BASIC13.55□□□□□ -0.24
HMGB3O15347 TRNT1-205ENST00000402675 1935 ntTSL 2 BASIC13.54□□□□□ -0.24
HMGB3O15347 LMBR1-201ENST00000353442 7997 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
HMGB3O15347 KCNT1-211ENST00000491806 3678 ntAPPRIS ALT2 TSL 5 BASIC13.54□□□□□ -0.24
HMGB3O15347 VPS13B-201ENST00000355155 2822 ntTSL 1 (best) BASIC13.54□□□□□ -0.24
HMGB3O15347 COL4A3BP-204ENST00000405807 2843 ntAPPRIS P1 TSL 5 BASIC13.54□□□□□ -0.24
HMGB3O15347 KIF7-201ENST00000394412 4551 ntAPPRIS P1 TSL 5 BASIC13.54□□□□□ -0.24
HMGB3O15347 MBD1-222ENST00000590208 2913 ntAPPRIS ALT2 TSL 1 (best) BASIC13.54□□□□□ -0.24
HMGB3O15347 MARCKS-201ENST00000612661 4275 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
HMGB3O15347 GMPPB-203ENST00000480687 6108 ntAPPRIS P1 TSL 2 BASIC13.54□□□□□ -0.24
HMGB3O15347 DCHS1-201ENST00000299441 10765 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
HMGB3O15347 CACNA2D1-202ENST00000356860 7563 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
HMGB3O15347 MAP4K5-201ENST00000013125 4354 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
HMGB3O15347 KCNC2-207ENST00000548513 3026 ntAPPRIS ALT2 TSL 1 (best) BASIC13.54□□□□□ -0.24
HMGB3O15347 DIABLO-208ENST00000464942 2569 ntTSL 1 (best) BASIC13.54□□□□□ -0.24
HMGB3O15347 ORMDL3-201ENST00000304046 2111 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
HMGB3O15347 RAP1GDS1-201ENST00000264572 1686 ntTSL 5 BASIC13.54□□□□□ -0.24
HMGB3O15347 TPD52L2-209ENST00000611972 2197 ntTSL 3 BASIC13.54□□□□□ -0.24
HMGB3O15347 TRIM46-203ENST00000368383 2666 ntTSL 5 BASIC13.54□□□□□ -0.24
HMGB3O15347 RORA-204ENST00000449337 1701 ntAPPRIS ALT2 TSL 1 (best) BASIC13.54□□□□□ -0.24
HMGB3O15347 UBE2J1-201ENST00000435041 4290 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
HMGB3O15347 PAQR3-209ENST00000512733 9811 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
HMGB3O15347 EPS8L2-223ENST00000533256 3266 ntAPPRIS P2 TSL 5 BASIC13.54□□□□□ -0.24
HMGB3O15347 RGS7-203ENST00000366564 2295 ntAPPRIS ALT2 TSL 1 (best) BASIC13.54□□□□□ -0.24
HMGB3O15347 GRK6-202ENST00000355958 1789 ntAPPRIS ALT1 TSL 1 (best) BASIC13.54□□□□□ -0.24
HMGB3O15347 DAB1-202ENST00000371230 1150 ntTSL 5 BASIC13.54□□□□□ -0.24
HMGB3O15347 DUSP15-203ENST00000375966 1077 ntTSL 3 BASIC13.54□□□□□ -0.24
HMGB3O15347 DUSP15-204ENST00000398083 1212 ntTSL 5 BASIC13.54□□□□□ -0.24
HMGB3O15347 DUSP15-205ENST00000398084 1256 ntTSL 5 BASIC13.54□□□□□ -0.24
HMGB3O15347 UBE2J2-205ENST00000400930 1021 ntTSL 5 BASIC13.54□□□□□ -0.24
HMGB3O15347 CCR12P-201ENST00000446203 998 ntBASIC13.54□□□□□ -0.24
HMGB3O15347 CRIP2-202ENST00000483017 1176 ntTSL 2 BASIC13.54□□□□□ -0.24
HMGB3O15347 AC113404.2-201ENST00000507884 177 ntBASIC13.54□□□□□ -0.24
HMGB3O15347 LINC01301-204ENST00000530725 577 ntTSL 4 BASIC13.54□□□□□ -0.24
HMGB3O15347 AP005263.1-201ENST00000579126 914 ntTSL 2 BASIC13.54□□□□□ -0.24
HMGB3O15347 MIR3917-201ENST00000580971 93 ntBASIC13.54□□□□□ -0.24
HMGB3O15347 TMED1-207ENST00000591695 809 ntTSL 5 BASIC13.54□□□□□ -0.24
HMGB3O15347 USF2-205ENST00000594064 1179 ntTSL 2 BASIC13.54□□□□□ -0.24
HMGB3O15347 MAP1S-201ENST00000324096 3419 ntAPPRIS P3 TSL 1 (best) BASIC13.54□□□□□ -0.24
HMGB3O15347 ART1-201ENST00000250693 1312 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
HMGB3O15347 SLC30A5-209ENST00000621204 3999 ntTSL 5 BASIC13.54□□□□□ -0.24
HMGB3O15347 POC1A-201ENST00000296484 1898 ntAPPRIS P3 TSL 1 (best) BASIC13.54□□□□□ -0.24
HMGB3O15347 TFPI2-201ENST00000222543 2444 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
HMGB3O15347 DUSP18-201ENST00000334679 2479 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
HMGB3O15347 TMPO-203ENST00000343315 2465 ntTSL 5 BASIC13.54□□□□□ -0.24
HMGB3O15347 SUSD4-204ENST00000366878 3025 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
HMGB3O15347 CHRNB4-202ENST00000412074 1355 ntTSL 1 (best) BASIC13.54□□□□□ -0.24
HMGB3O15347 PCDHGA3-201ENST00000253812 4771 ntAPPRIS P3 TSL 1 (best) BASIC13.54□□□□□ -0.24
HMGB3O15347 BAG5-202ENST00000337322 1960 ntTSL 1 (best) BASIC13.54□□□□□ -0.24
HMGB3O15347 GSTZ1-204ENST00000393734 1424 ntTSL 5 BASIC13.54□□□□□ -0.24
HMGB3O15347 TRPC4AP-201ENST00000252015 3226 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
HMGB3O15347 DHRS4L2-203ENST00000534993 1450 ntTSL 3 BASIC13.54□□□□□ -0.24
HMGB3O15347 AL365203.3-201ENST00000609742 2057 ntBASIC13.54□□□□□ -0.24
HMGB3O15347 TTC13-201ENST00000366661 3253 ntAPPRIS P3 TSL 1 (best) BASIC13.54□□□□□ -0.24
HMGB3O15347 PGAP3-201ENST00000300658 2737 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
HMGB3O15347 SERINC2-202ENST00000373710 2146 ntTSL 2 BASIC13.54□□□□□ -0.24
Retrieved 100 of 98,524 protein–RNA pairs in 35.1 ms