RNA–Protein interactions for RNA: ENST00000253812.7

PCDHGA3-201, Transcript of protocadherin gamma subfamily A, 3, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene PCDHGA3, Length 4,771 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHGA3-201ENST00000253812 NISCHQ9Y2I1 1504 aa22.17■■□□□ 1.14
PCDHGA3-201ENST00000253812 DCAF8L2P0C7V8 631 aa22.11■■□□□ 1.13
PCDHGA3-201ENST00000253812 PELP1Q8IZL8 1130 aaKnown RBP21.63■■□□□ 1.05
PCDHGA3-201ENST00000253812 MYT1Q01538 1121 aa21.42■■□□□ 1.02
PCDHGA3-201ENST00000253812 SUPT5HO00267 1087 aaKnown RBP20.97■□□□□ 0.95
PCDHGA3-201ENST00000253812 SHROOM4Q9ULL8 1493 aa20.87■□□□□ 0.93
PCDHGA3-201ENST00000253812 CENPBP07199 599 aaPredicted RBP20.68■□□□□ 0.9
PCDHGA3-201ENST00000253812 ERICH6Q7L0X2 663 aa20.67■□□□□ 0.9
PCDHGA3-201ENST00000253812 CCER1Q8TC90 406 aaPredicted RBP20.56■□□□□ 0.88
PCDHGA3-201ENST00000253812 PCGF6Q9BYE7 350 aa20.32■□□□□ 0.84
PCDHGA3-201ENST00000253812 ZEB1P37275 1124 aaPredicted RBP20.31■□□□□ 0.84
PCDHGA3-201ENST00000253812 EHMT2Q96KQ7 1210 aa20.07■□□□□ 0.8
PCDHGA3-201ENST00000253812 NEFLP07196 543 aa19.97■□□□□ 0.79
PCDHGA3-201ENST00000253812 APLP2Q06481 763 aa19.93■□□□□ 0.78
PCDHGA3-201ENST00000253812 TTBK1Q5TCY1 1321 aaPredicted RBP19.88■□□□□ 0.77
PCDHGA3-201ENST00000253812 YTHDC1Q96MU7 727 aaKnown RBP19.76■□□□□ 0.75
PCDHGA3-201ENST00000253812 FAM9AQ8IZU1 332 aaPredicted RBP19.71■□□□□ 0.75
PCDHGA3-201ENST00000253812 HRCP23327 699 aa19.68■□□□□ 0.74
PCDHGA3-201ENST00000253812 DAXXQ9UER7 740 aaPredicted RBP19.45■□□□□ 0.7
PCDHGA3-201ENST00000253812 TRIM41Q8WV44 630 aa19.42■□□□□ 0.7
PCDHGA3-201ENST00000253812 RTL5Q5HYW3 569 aaPredicted RBP19.38■□□□□ 0.69
PCDHGA3-201ENST00000253812 TRIM26Q12899 539 aaPredicted RBP19.31■□□□□ 0.68
PCDHGA3-201ENST00000253812 RANGAP1P46060 587 aaPredicted RBP19.25■□□□□ 0.67
PCDHGA3-201ENST00000253812 UBTFP17480 764 aaKnown RBP19.07■□□□□ 0.64
PCDHGA3-201ENST00000253812 PPARGC1BQ86YN6 1023 aaKnown RBP19.06■□□□□ 0.64
PCDHGA3-201ENST00000253812 ABCC9O60706 1549 aa19.04■□□□□ 0.64
PCDHGA3-201ENST00000253812 GTF3C3Q9Y5Q9 886 aa19.04■□□□□ 0.64
PCDHGA3-201ENST00000253812 DIEXFQ68CQ4 756 aaKnown RBP18.98■□□□□ 0.63
PCDHGA3-201ENST00000253812 ZNF316A6NFI3 1004 aaPredicted RBP18.96■□□□□ 0.63
PCDHGA3-201ENST00000253812 ATP1B4Q9UN42 357 aaPredicted RBP18.95■□□□□ 0.62
PCDHGA3-201ENST00000253812 CHIC1Q5VXU3 224 aa18.88■□□□□ 0.61
PCDHGA3-201ENST00000253812 PABPN1Q86U42 306 aaKnown RBP eCLIP18.83■□□□□ 0.6
PCDHGA3-201ENST00000253812 GLIPR1L2Q4G1C9 344 aa18.8■□□□□ 0.6
PCDHGA3-201ENST00000253812 EIF5BO60841 1220 aaKnown RBP18.78■□□□□ 0.6
PCDHGA3-201ENST00000253812 LOC105371045A0A1W2PR82 267 aa18.77■□□□□ 0.6
PCDHGA3-201ENST00000253812 ACIN1Q9UKV3 1341 aaKnown RBP18.76■□□□□ 0.59
PCDHGA3-201ENST00000253812 CDK11AQ9UQ88 783 aaPredicted RBP18.75■□□□□ 0.59
PCDHGA3-201ENST00000253812 CLSPNQ9HAW4 1339 aa18.68■□□□□ 0.58
PCDHGA3-201ENST00000253812 MYT1LQ9UL68 1186 aa18.68■□□□□ 0.58
PCDHGA3-201ENST00000253812 BCANQ96GW7 911 aa18.66■□□□□ 0.58
PCDHGA3-201ENST00000253812 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP18.55■□□□□ 0.56
PCDHGA3-201ENST00000253812 POLR3GLQ9BT43 218 aa18.52■□□□□ 0.56
PCDHGA3-201ENST00000253812 ANP32AP39687 249 aaKnown RBP18.49■□□□□ 0.55
PCDHGA3-201ENST00000253812 HNRNPUL2Q1KMD3 747 aaKnown RBP18.49■□□□□ 0.55
PCDHGA3-201ENST00000253812 ITGAEP38570 1179 aa18.39■□□□□ 0.53
PCDHGA3-201ENST00000253812 ZCCHC6Q5VYS8 1495 aaKnown RBP18.37■□□□□ 0.53
PCDHGA3-201ENST00000253812 CNGB1Q14028 1251 aaPredicted RBP18.37■□□□□ 0.53
PCDHGA3-201ENST00000253812 ANP32CO43423 234 aa18.3■□□□□ 0.52
PCDHGA3-201ENST00000253812 ANP32BQ92688 251 aaKnown RBP18.25■□□□□ 0.51
PCDHGA3-201ENST00000253812 SCRIBQ14160 1630 aa18.23■□□□□ 0.51
PCDHGA3-201ENST00000253812 SCAF1Q9H7N4 1312 aaKnown RBP18.22■□□□□ 0.51
PCDHGA3-201ENST00000253812 CCDC180Q9P1Z9 1646 aa18.21■□□□□ 0.51
PCDHGA3-201ENST00000253812 NPM2Q86SE8 214 aaKnown RBP18.15■□□□□ 0.5
PCDHGA3-201ENST00000253812 NEUROD1Q13562 356 aa18.14■□□□□ 0.5
PCDHGA3-201ENST00000253812 ANP32EQ9BTT0 268 aa18.14■□□□□ 0.5
PCDHGA3-201ENST00000253812 FKBP8Q14318 412 aa18.14■□□□□ 0.49
PCDHGA3-201ENST00000253812 NBR1Q14596 966 aa18.1■□□□□ 0.49
PCDHGA3-201ENST00000253812 ZBTB47Q9UFB7 747 aaPredicted RBP18.09■□□□□ 0.49
PCDHGA3-201ENST00000253812 BCL11AQ9H165 835 aa18.02■□□□□ 0.48
PCDHGA3-201ENST00000253812 CSRNP3Q8WYN3 585 aa17.99■□□□□ 0.47
PCDHGA3-201ENST00000253812 FAM50AQ14320 339 aaKnown RBP17.97■□□□□ 0.47
PCDHGA3-201ENST00000253812 TNNT2P45379 298 aaPredicted RBP17.95■□□□□ 0.46
PCDHGA3-201ENST00000253812 FBLN2P98095 1184 aa17.94■□□□□ 0.46
PCDHGA3-201ENST00000253812 SLC4A1APQ9BWU0 796 aaKnown RBP17.91■□□□□ 0.46
PCDHGA3-201ENST00000253812 CANXP27824 592 aaKnown RBP17.9■□□□□ 0.46
PCDHGA3-201ENST00000253812 UPF2Q9HAU5 1272 aaKnown RBP17.89■□□□□ 0.45
PCDHGA3-201ENST00000253812 HSP90AA1P07900 732 aaKnown RBP17.87■□□□□ 0.45
PCDHGA3-201ENST00000253812 ERICH6BQ5W0A0 696 aa17.87■□□□□ 0.45
PCDHGA3-201ENST00000253812 P3H3Q8IVL6 736 aa17.87■□□□□ 0.45
PCDHGA3-201ENST00000253812 CCDC136Q96JN2 1154 aa17.8■□□□□ 0.44
PCDHGA3-201ENST00000253812 RB1CC1Q8TDY2 1594 aa17.79■□□□□ 0.44
PCDHGA3-201ENST00000253812 HNRNPUQ00839 825 aaKnown RBP eCLIP17.78■□□□□ 0.44
PCDHGA3-201ENST00000253812 TRIM52Q96A61 297 aa17.77■□□□□ 0.43
PCDHGA3-201ENST00000253812 ARXQ96QS3 562 aa17.77■□□□□ 0.43
PCDHGA3-201ENST00000253812 TRIM44Q96DX7 344 aaPredicted RBP17.76■□□□□ 0.43
PCDHGA3-201ENST00000253812 ARID3CA6NKF2 412 aa17.75■□□□□ 0.43
PCDHGA3-201ENST00000253812 NEFMP07197 916 aa17.74■□□□□ 0.43
PCDHGA3-201ENST00000253812 RSF1Q96T23 1441 aaPredicted RBP17.73■□□□□ 0.43
PCDHGA3-201ENST00000253812 NACADO15069 1562 aa17.69■□□□□ 0.42
PCDHGA3-201ENST00000253812 DDRGK1Q96HY6 314 aa17.67■□□□□ 0.42
PCDHGA3-201ENST00000253812 RTN4Q9NQC3 1192 aaKnown RBP17.67■□□□□ 0.42
PCDHGA3-201ENST00000253812 CDK11BP21127 795 aaKnown RBP17.67■□□□□ 0.42
PCDHGA3-201ENST00000253812 PPM1GO15355 546 aaPredicted RBP17.66■□□□□ 0.42
PCDHGA3-201ENST00000253812 NAP1L5Q96NT1 182 aaPredicted RBP17.65■□□□□ 0.42
PCDHGA3-201ENST00000253812 ZNF326Q5BKZ1 582 aaKnown RBP17.62■□□□□ 0.41
PCDHGA3-201ENST00000253812 MIER1Q8N108 512 aa17.6■□□□□ 0.41
PCDHGA3-201ENST00000253812 NCLP19338 710 aaKnown RBP17.58■□□□□ 0.4
PCDHGA3-201ENST00000253812 DDX10Q13206 875 aaKnown RBP17.57■□□□□ 0.4
PCDHGA3-201ENST00000253812 GOLGA6L2Q8N9W4 650 aaPredicted RBP17.57■□□□□ 0.4
PCDHGA3-201ENST00000253812 BECN1Q14457 450 aa17.55■□□□□ 0.4
PCDHGA3-201ENST00000253812 FAM9BQ8IZU0 186 aa17.55■□□□□ 0.4
PCDHGA3-201ENST00000253812 DEKP35659 375 aaKnown RBP17.53■□□□□ 0.4
PCDHGA3-201ENST00000253812 DCAF1Q9Y4B6 1507 aa17.51■□□□□ 0.39
PCDHGA3-201ENST00000253812 ZNF777Q9ULD5 760 aaPredicted RBP17.51■□□□□ 0.39
PCDHGA3-201ENST00000253812 NOP58Q9Y2X3 529 aaKnown RBP17.5■□□□□ 0.39
PCDHGA3-201ENST00000253812 CECR2Q9BXF3 1484 aa17.49■□□□□ 0.39
PCDHGA3-201ENST00000253812 GOLGA6L22H0YM25 854 aa17.48■□□□□ 0.39
PCDHGA3-201ENST00000253812 IRX6P78412 446 aaPredicted RBP17.48■□□□□ 0.39
PCDHGA3-201ENST00000253812 DNTTIP2Q5QJE6 756 aaKnown RBP17.44■□□□□ 0.38
PCDHGA3-201ENST00000253812 MYO15BQ96JP2 1530 aa17.44■□□□□ 0.38
Retrieved 100 of 20,778 RNA–protein pairs in 24.7 ms