Protein–RNA interactions for Protein: Q9Y3P4

RHBDD3, Rhomboid domain-containing protein 3, humanhuman

Predictions only

Length 386 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RHBDD3Q9Y3P4 RDH13-202ENST00000396247 1987 ntTSL 1 (best) BASIC14.75□□□□□ -0.05
RHBDD3Q9Y3P4 ANKRD26-201ENST00000376087 6591 ntAPPRIS P2 TSL 5 BASIC14.75□□□□□ -0.05
RHBDD3Q9Y3P4 LRRC59-201ENST00000225972 2910 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
RHBDD3Q9Y3P4 EIF4G1-202ENST00000346169 5516 ntAPPRIS P3 TSL 1 (best) BASIC14.75□□□□□ -0.05
RHBDD3Q9Y3P4 LINC00029-201ENST00000370341 1631 ntTSL 1 (best) BASIC14.75□□□□□ -0.05
RHBDD3Q9Y3P4 ELK1-203ENST00000376983 2258 ntAPPRIS P3 TSL 1 (best) BASIC14.75□□□□□ -0.05
RHBDD3Q9Y3P4 TRIM39-205ENST00000396551 3249 ntAPPRIS ALT2 TSL 5 BASIC14.75□□□□□ -0.05
RHBDD3Q9Y3P4 SCYL1-214ENST00000533862 2570 ntTSL 5 BASIC14.75□□□□□ -0.05
RHBDD3Q9Y3P4 LINC01215-201ENST00000607746 2592 ntTSL 3 BASIC14.75□□□□□ -0.05
RHBDD3Q9Y3P4 TPM1-203ENST00000317516 738 ntTSL 1 (best) BASIC14.75□□□□□ -0.05
RHBDD3Q9Y3P4 TOR3A-201ENST00000352445 1182 ntTSL 1 (best) BASIC14.75□□□□□ -0.05
RHBDD3Q9Y3P4 MRPL43-208ENST00000370242 884 ntTSL 2 BASIC14.75□□□□□ -0.05
RHBDD3Q9Y3P4 C6orf48-203ENST00000375638 847 ntAPPRIS P1 TSL 2 BASIC14.75□□□□□ -0.05
RHBDD3Q9Y3P4 C6orf48-207ENST00000375642 962 ntAPPRIS P1 TSL 2 BASIC14.75□□□□□ -0.05
RHBDD3Q9Y3P4 HDAC11-202ENST00000402259 1000 ntTSL 3 BASIC14.75□□□□□ -0.05
RHBDD3Q9Y3P4 RBM17P3-201ENST00000417687 1192 ntBASIC14.75□□□□□ -0.05
RHBDD3Q9Y3P4 TSPY19P-201ENST00000418461 509 ntBASIC14.75□□□□□ -0.05
RHBDD3Q9Y3P4 TSPY18P-201ENST00000441642 509 ntBASIC14.75□□□□□ -0.05
RHBDD3Q9Y3P4 KLK12-203ENST00000525263 1077 ntAPPRIS ALT2 TSL 1 (best) BASIC14.75□□□□□ -0.05
RHBDD3Q9Y3P4 MTHFSD-203ENST00000543303 1207 ntAPPRIS ALT2 TSL 1 (best) BASIC14.75□□□□□ -0.05
RHBDD3Q9Y3P4 BLOC1S1-204ENST00000549147 1229 ntTSL 1 (best) BASIC14.75□□□□□ -0.05
RHBDD3Q9Y3P4 AC079385.1-201ENST00000551505 570 ntTSL 4 BASIC14.75□□□□□ -0.05
RHBDD3Q9Y3P4 TPM1-218ENST00000559281 851 ntTSL 5 BASIC14.75□□□□□ -0.05
RHBDD3Q9Y3P4 MCRIP1-206ENST00000573478 1123 ntTSL 2 BASIC14.75□□□□□ -0.05
RHBDD3Q9Y3P4 MTDHP3-201ENST00000594186 672 ntBASIC14.75□□□□□ -0.05
RHBDD3Q9Y3P4 AC132872.3-201ENST00000620937 629 ntTSL 5 BASIC14.75□□□□□ -0.05
RHBDD3Q9Y3P4 MTHFSD-220ENST00000634347 1207 ntAPPRIS P3 TSL 1 (best) BASIC14.75□□□□□ -0.05
RHBDD3Q9Y3P4 OSBPL9-222ENST00000531828 2210 ntTSL 5 BASIC14.75□□□□□ -0.05
RHBDD3Q9Y3P4 PEX6-202ENST00000304611 3478 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
RHBDD3Q9Y3P4 AL512625.1-201ENST00000305709 2541 ntTSL 1 (best) BASIC14.75□□□□□ -0.05
RHBDD3Q9Y3P4 GALNT6-201ENST00000356317 2809 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
RHBDD3Q9Y3P4 FAM131B-206ENST00000443739 4382 ntAPPRIS ALT1 TSL 1 (best) BASIC14.75□□□□□ -0.05
RHBDD3Q9Y3P4 RPL3L-201ENST00000268661 2182 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
RHBDD3Q9Y3P4 MMP15-201ENST00000219271 4250 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
RHBDD3Q9Y3P4 TMEM39B-201ENST00000336294 1813 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
RHBDD3Q9Y3P4 LINC00487-201ENST00000382045 2131 ntTSL 2 BASIC14.75□□□□□ -0.05
RHBDD3Q9Y3P4 JADE2-201ENST00000282605 2748 ntAPPRIS P1 TSL 2 BASIC14.75□□□□□ -0.05
RHBDD3Q9Y3P4 TNXB-209ENST00000613214 6842 ntTSL 5 BASIC14.75□□□□□ -0.05
RHBDD3Q9Y3P4 SHTN1-201ENST00000260777 5308 ntAPPRIS ALT2 TSL 2 BASIC14.75□□□□□ -0.05
RHBDD3Q9Y3P4 NFIX-209ENST00000587760 1487 ntTSL 1 (best) BASIC14.75□□□□□ -0.05
RHBDD3Q9Y3P4 IFNL4-204ENST00000634967 1493 ntAPPRIS ALT2 TSL 1 (best) BASIC14.75□□□□□ -0.05
RHBDD3Q9Y3P4 LAPTM4B-201ENST00000445593 3173 ntTSL 1 (best) BASIC14.75□□□□□ -0.05
RHBDD3Q9Y3P4 GPC1-201ENST00000264039 3713 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
RHBDD3Q9Y3P4 EPB41L3-203ENST00000400111 4259 ntTSL 5 BASIC14.75□□□□□ -0.05
RHBDD3Q9Y3P4 ERVK13-1-203ENST00000564340 1449 ntTSL 1 (best) BASIC14.75□□□□□ -0.05
RHBDD3Q9Y3P4 SEPT8-204ENST00000378699 2289 ntTSL 5 BASIC14.75□□□□□ -0.05
RHBDD3Q9Y3P4 MVB12B-201ENST00000361171 4819 ntAPPRIS P1 TSL 2 BASIC14.75□□□□□ -0.05
RHBDD3Q9Y3P4 TNFRSF13C-201ENST00000291232 3944 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
RHBDD3Q9Y3P4 TAB1-202ENST00000331454 1660 ntTSL 1 (best) BASIC14.74□□□□□ -0.05
RHBDD3Q9Y3P4 CYP2R1-201ENST00000334636 2235 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
RHBDD3Q9Y3P4 C9orf172-201ENST00000436881 4387 ntAPPRIS P1 BASIC14.74□□□□□ -0.05
RHBDD3Q9Y3P4 IGSF8-205ENST00000614243 2191 ntAPPRIS P2 TSL 1 (best) BASIC14.74□□□□□ -0.05
RHBDD3Q9Y3P4 VARS2-212ENST00000542001 4064 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
RHBDD3Q9Y3P4 DGKZ-201ENST00000318201 3213 ntTSL 2 BASIC14.74□□□□□ -0.05
RHBDD3Q9Y3P4 TUBGCP2-202ENST00000368562 2685 ntTSL 2 BASIC14.74□□□□□ -0.05
RHBDD3Q9Y3P4 ZC3H12A-201ENST00000373087 2684 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
RHBDD3Q9Y3P4 TXNDC11-202ENST00000356957 3178 ntAPPRIS ALT2 TSL 1 (best) BASIC14.74□□□□□ -0.05
RHBDD3Q9Y3P4 FRMD5-202ENST00000417257 5011 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
RHBDD3Q9Y3P4 AIFM3-202ENST00000399167 2387 ntAPPRIS P3 TSL 2 BASIC14.74□□□□□ -0.05
RHBDD3Q9Y3P4 AIFM3-207ENST00000440238 2368 ntAPPRIS P3 TSL 1 (best) BASIC14.74□□□□□ -0.05
RHBDD3Q9Y3P4 CSNK1D-204ENST00000398519 1580 ntTSL 5 BASIC14.74□□□□□ -0.05
RHBDD3Q9Y3P4 PKN3-201ENST00000291906 3375 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
RHBDD3Q9Y3P4 EVPLL-201ENST00000399134 2095 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
RHBDD3Q9Y3P4 VCAN-204ENST00000502527 2087 ntAPPRIS ALT1 TSL 1 (best) BASIC14.74□□□□□ -0.05
RHBDD3Q9Y3P4 ATRNL1-201ENST00000355044 8479 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
RHBDD3Q9Y3P4 AC074117.1-201ENST00000447070 3060 ntTSL 2 BASIC14.74□□□□□ -0.05
RHBDD3Q9Y3P4 S100A11-201ENST00000271638 594 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
RHBDD3Q9Y3P4 ATP5J-201ENST00000284971 614 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
RHBDD3Q9Y3P4 MCL1-201ENST00000307940 1110 ntTSL 1 (best) BASIC14.74□□□□□ -0.05
RHBDD3Q9Y3P4 GJC3-201ENST00000312891 1116 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
RHBDD3Q9Y3P4 DFFB-203ENST00000341385 572 ntTSL 5 BASIC14.74□□□□□ -0.05
RHBDD3Q9Y3P4 CT47A11-201ENST00000457020 1294 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
RHBDD3Q9Y3P4 HOXB-AS4-202ENST00000480386 566 ntTSL 4 BASIC14.74□□□□□ -0.05
RHBDD3Q9Y3P4 RAP1B-229ENST00000543393 874 ntTSL 3 BASIC14.74□□□□□ -0.05
RHBDD3Q9Y3P4 JPH4-203ENST00000544177 1124 ntTSL 2 BASIC14.74□□□□□ -0.05
RHBDD3Q9Y3P4 NKAPP1-205ENST00000585790 367 ntBASIC14.74□□□□□ -0.05
RHBDD3Q9Y3P4 AL590235.2-202ENST00000602543 594 ntTSL 5 BASIC14.74□□□□□ -0.05
RHBDD3Q9Y3P4 F3-201ENST00000334047 2287 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
RHBDD3Q9Y3P4 BTN1A1-202ENST00000613186 2266 ntTSL 2 BASIC14.74□□□□□ -0.05
RHBDD3Q9Y3P4 AVL9-201ENST00000318709 6982 ntAPPRIS P1 TSL 2 BASIC14.74□□□□□ -0.05
RHBDD3Q9Y3P4 WT1-203ENST00000379079 2466 ntTSL 1 (best) BASIC14.74□□□□□ -0.05
RHBDD3Q9Y3P4 GNB4-201ENST00000232564 6434 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
RHBDD3Q9Y3P4 CR392000.2-201ENST00000640235 1994 ntTSL 2 BASIC14.74□□□□□ -0.05
RHBDD3Q9Y3P4 HIST1H2BN-204ENST00000612898 1723 ntAPPRIS P1 BASIC14.74□□□□□ -0.05
RHBDD3Q9Y3P4 TFAP2D-201ENST00000008391 1711 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
RHBDD3Q9Y3P4 VIPR2-202ENST00000377633 1491 ntTSL 2 BASIC14.74□□□□□ -0.05
RHBDD3Q9Y3P4 ARID4B-202ENST00000349213 5811 ntTSL 1 (best) BASIC14.74□□□□□ -0.05
RHBDD3Q9Y3P4 GSK3B-201ENST00000264235 7711 ntAPPRIS ALT1 TSL 1 (best) BASIC14.74□□□□□ -0.05
RHBDD3Q9Y3P4 PDCD2-208ENST00000541970 3378 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
RHBDD3Q9Y3P4 CPSF4-201ENST00000292476 1691 ntAPPRIS P3 TSL 1 (best) BASIC14.74□□□□□ -0.05
RHBDD3Q9Y3P4 STAP2-201ENST00000594605 1426 ntAPPRIS ALT2 TSL 1 (best) BASIC14.74□□□□□ -0.05
RHBDD3Q9Y3P4 PDCD1-201ENST00000334409 2114 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
RHBDD3Q9Y3P4 AL662844.4-201ENST00000606367 2838 ntBASIC14.74□□□□□ -0.05
RHBDD3Q9Y3P4 NFAM1-201ENST00000329021 5602 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
RHBDD3Q9Y3P4 NAT9-210ENST00000580301 1860 ntTSL 1 (best) BASIC14.74□□□□□ -0.05
RHBDD3Q9Y3P4 BX088651.4-201ENST00000435586 2579 ntTSL 2 BASIC14.74□□□□□ -0.05
RHBDD3Q9Y3P4 VANGL2-201ENST00000368061 5340 ntAPPRIS P1 TSL 2 BASIC14.73□□□□□ -0.05
RHBDD3Q9Y3P4 CYB561D1-205ENST00000430195 5077 ntTSL 2 BASIC14.73□□□□□ -0.05
RHBDD3Q9Y3P4 HNRNPA3-201ENST00000392524 2067 ntAPPRIS P3 TSL 5 BASIC14.73□□□□□ -0.05
RHBDD3Q9Y3P4 GID4-202ENST00000376345 1391 ntTSL 3 BASIC14.73□□□□□ -0.05
Retrieved 100 of 98,524 protein–RNA pairs in 42.6 ms