Protein–RNA interactions for Protein: O96005

CLPTM1, Cleft lip and palate transmembrane protein 1, humanhuman

Predictions only

Length 669 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLPTM1O96005 TDRD6-201ENST00000316081 6817 ntAPPRIS P3 TSL 1 (best) BASIC15.93■□□□□ 0.14
CLPTM1O96005 EXO5-203ENST00000372703 2567 ntAPPRIS P1 TSL 2 BASIC15.93■□□□□ 0.14
CLPTM1O96005 CDH1-202ENST00000422392 2567 ntTSL 1 (best) BASIC15.93■□□□□ 0.14
CLPTM1O96005 HNRNPU-204ENST00000440865 3207 ntTSL 2 BASIC15.93■□□□□ 0.14
CLPTM1O96005 ASCL1-201ENST00000266744 2472 ntAPPRIS P1 TSL 1 (best) BASIC15.93■□□□□ 0.14
CLPTM1O96005 MIER1-205ENST00000371014 1728 ntTSL 2 BASIC15.93■□□□□ 0.14
CLPTM1O96005 AC003986.2-201ENST00000419944 1711 ntTSL 3 BASIC15.93■□□□□ 0.14
CLPTM1O96005 LAT2-202ENST00000344995 2363 ntAPPRIS P2 TSL 1 (best) BASIC15.93■□□□□ 0.14
CLPTM1O96005 TBC1D2-201ENST00000342112 3046 ntTSL 2 BASIC15.93■□□□□ 0.14
CLPTM1O96005 SIGIRR-220ENST00000531205 1649 ntTSL 2 BASIC15.93■□□□□ 0.14
CLPTM1O96005 INPP5B-202ENST00000373023 4694 ntAPPRIS ALT2 TSL 5 BASIC15.93■□□□□ 0.14
CLPTM1O96005 PI16-201ENST00000373674 2190 ntAPPRIS P1 TSL 1 (best) BASIC15.93■□□□□ 0.14
CLPTM1O96005 POLR2A-201ENST00000572844 2083 ntAPPRIS P1 TSL 1 (best) BASIC15.93■□□□□ 0.14
CLPTM1O96005 CROCC-201ENST00000375541 6656 ntAPPRIS P1 TSL 5 BASIC15.93■□□□□ 0.14
CLPTM1O96005 GGT6-201ENST00000301395 2534 ntTSL 2 BASIC15.93■□□□□ 0.14
CLPTM1O96005 AC019205.2-202ENST00000441363 2403 ntTSL 5 BASIC15.93■□□□□ 0.14
CLPTM1O96005 MAGEA3-203ENST00000598245 1762 ntAPPRIS P1 TSL 2 BASIC15.92■□□□□ 0.14
CLPTM1O96005 MAGEA6-204ENST00000616035 1762 ntAPPRIS P1 TSL 5 BASIC15.92■□□□□ 0.14
CLPTM1O96005 PPIL6-207ENST00000521072 4128 ntAPPRIS P1 TSL 1 (best) BASIC15.92■□□□□ 0.14
CLPTM1O96005 VTN-201ENST00000226218 2149 ntAPPRIS P1 TSL 1 (best) BASIC15.92■□□□□ 0.14
CLPTM1O96005 TMEM139-205ENST00000410004 2114 ntAPPRIS P1 TSL 2 BASIC15.92■□□□□ 0.14
CLPTM1O96005 SMARCA4-201ENST00000344626 5392 ntTSL 1 (best) BASIC15.92■□□□□ 0.14
CLPTM1O96005 LEF1-202ENST00000379951 3477 ntTSL 1 (best) BASIC15.92■□□□□ 0.14
CLPTM1O96005 UHMK1-202ENST00000489294 8478 ntAPPRIS P1 TSL 1 (best) BASIC15.92■□□□□ 0.14
CLPTM1O96005 CCDC83-201ENST00000280245 2358 ntAPPRIS P3 TSL 2 BASIC15.92■□□□□ 0.14
CLPTM1O96005 EYA4-205ENST00000430974 2364 ntTSL 2 BASIC15.92■□□□□ 0.14
CLPTM1O96005 BRF1-205ENST00000440513 2368 ntTSL 2 BASIC15.92■□□□□ 0.14
CLPTM1O96005 TSPAN7-202ENST00000378482 1909 ntAPPRIS P1 TSL 1 (best) BASIC15.92■□□□□ 0.14
CLPTM1O96005 SFRP4-201ENST00000436072 2966 ntAPPRIS P1 TSL 1 (best) BASIC15.92■□□□□ 0.14
CLPTM1O96005 DACH1-203ENST00000619232 2986 ntAPPRIS ALT2 TSL 5 BASIC15.92■□□□□ 0.14
CLPTM1O96005 ZDHHC20-201ENST00000320220 1351 ntTSL 1 (best) BASIC15.92■□□□□ 0.14
CLPTM1O96005 ZMYM5-202ENST00000382905 1382 ntTSL 1 (best) BASIC15.92■□□□□ 0.14
CLPTM1O96005 CAST-224ENST00000508830 2539 ntAPPRIS ALT2 TSL 5 BASIC15.92■□□□□ 0.14
CLPTM1O96005 KCNC1-201ENST00000265969 4295 ntAPPRIS P1 TSL 5 BASIC15.92■□□□□ 0.14
CLPTM1O96005 GUK1-204ENST00000366721 689 ntTSL 3 BASIC15.92■□□□□ 0.14
CLPTM1O96005 LCN8-201ENST00000371688 867 ntAPPRIS P2 TSL 1 (best) BASIC15.92■□□□□ 0.14
CLPTM1O96005 KRT18P38-201ENST00000449496 1282 ntBASIC15.92■□□□□ 0.14
CLPTM1O96005 SEC1P-202ENST00000473944 940 ntBASIC15.92■□□□□ 0.14
CLPTM1O96005 FIS1-207ENST00000474120 915 ntTSL 1 (best) BASIC15.92■□□□□ 0.14
CLPTM1O96005 KRT18P35-201ENST00000510488 1269 ntBASIC15.92■□□□□ 0.14
CLPTM1O96005 GRP-204ENST00000529320 824 ntAPPRIS ALT2 TSL 1 (best) BASIC15.92■□□□□ 0.14
CLPTM1O96005 NME3-204ENST00000563498 920 ntTSL 2 BASIC15.92■□□□□ 0.14
CLPTM1O96005 DCTN5-208ENST00000568589 772 ntTSL 2 BASIC15.92■□□□□ 0.14
CLPTM1O96005 PSMD8-202ENST00000585598 541 ntTSL 5 BASIC15.92■□□□□ 0.14
CLPTM1O96005 TPSB2-201ENST00000606293 1165 ntAPPRIS ALT2 TSL 1 (best) BASIC15.92■□□□□ 0.14
CLPTM1O96005 AL590326.2-201ENST00000625139 305 ntBASIC15.92■□□□□ 0.14
CLPTM1O96005 DNAJB6-218ENST00000634080 1005 ntTSL 2 BASIC15.92■□□□□ 0.14
CLPTM1O96005 C2orf54-203ENST00000402775 1958 ntAPPRIS ALT2 TSL 2 BASIC15.92■□□□□ 0.14
CLPTM1O96005 SPEG-201ENST00000312358 10782 ntAPPRIS P1 TSL 5 BASIC15.92■□□□□ 0.14
CLPTM1O96005 L3HYPDH-201ENST00000247194 1527 ntAPPRIS P1 TSL 1 (best) BASIC15.92■□□□□ 0.14
CLPTM1O96005 AGER-205ENST00000375069 1538 ntTSL 1 (best) BASIC15.92■□□□□ 0.14
CLPTM1O96005 LITAF-202ENST00000381810 1527 ntTSL 5 BASIC15.92■□□□□ 0.14
CLPTM1O96005 PTBP1-201ENST00000349038 3155 ntAPPRIS P3 TSL 1 (best) BASIC15.92■□□□□ 0.14
CLPTM1O96005 PTBP1-204ENST00000394601 3185 ntTSL 1 (best) BASIC15.92■□□□□ 0.14
CLPTM1O96005 AC009242.1-201ENST00000634300 2706 ntTSL 5 BASIC15.92■□□□□ 0.14
CLPTM1O96005 PDP1-201ENST00000297598 4272 ntAPPRIS P3 TSL 1 (best) BASIC15.92■□□□□ 0.14
CLPTM1O96005 LINC01529-205ENST00000637365 2000 ntTSL 5 BASIC15.92■□□□□ 0.14
CLPTM1O96005 CBS-204ENST00000398165 2605 ntAPPRIS P1 TSL 1 (best) BASIC15.92■□□□□ 0.14
CLPTM1O96005 ADAM15-204ENST00000359280 2874 ntAPPRIS ALT2 TSL 1 (best) BASIC15.92■□□□□ 0.14
CLPTM1O96005 ARHGEF5-201ENST00000056217 5544 ntAPPRIS P2 TSL 1 (best) BASIC15.92■□□□□ 0.14
CLPTM1O96005 EOMES-201ENST00000295743 3386 ntAPPRIS P1 TSL 1 (best) BASIC15.92■□□□□ 0.14
CLPTM1O96005 TPBG-202ENST00000535040 3392 ntAPPRIS P1 TSL 2 BASIC15.92■□□□□ 0.14
CLPTM1O96005 TBXAS1-201ENST00000336425 2185 ntAPPRIS P1 TSL 1 (best) BASIC15.92■□□□□ 0.14
CLPTM1O96005 PODN-202ENST00000371500 3287 ntAPPRIS ALT2 TSL 1 (best) BASIC15.92■□□□□ 0.14
CLPTM1O96005 ACE-202ENST00000290866 4959 ntAPPRIS P1 TSL 1 (best) BASIC15.92■□□□□ 0.14
CLPTM1O96005 BIN3-201ENST00000276416 1835 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
CLPTM1O96005 NPY4R-202ENST00000612632 1800 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
CLPTM1O96005 NPY4R2-202ENST00000613306 1800 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
CLPTM1O96005 NUP88-207ENST00000573584 2916 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
CLPTM1O96005 HPCA-201ENST00000373467 1468 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
CLPTM1O96005 OAZ2-207ENST00000560258 1744 ntTSL 5 BASIC15.91■□□□□ 0.14
CLPTM1O96005 DMPK-202ENST00000343373 3227 ntTSL 1 (best) BASIC15.91■□□□□ 0.14
CLPTM1O96005 USP25-201ENST00000285679 3973 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
CLPTM1O96005 HMGA2-210ENST00000541363 8094 ntAPPRIS ALT1 TSL 1 (best) BASIC15.91■□□□□ 0.14
CLPTM1O96005 MBNL1-202ENST00000282488 6458 ntTSL 5 BASIC15.91■□□□□ 0.14
CLPTM1O96005 AC138035.3-201ENST00000622706 2791 ntBASIC15.91■□□□□ 0.14
CLPTM1O96005 IL11-201ENST00000264563 2281 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
CLPTM1O96005 TSEN34-202ENST00000396383 1548 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
CLPTM1O96005 MRAS-204ENST00000464896 1534 ntTSL 2 BASIC15.91■□□□□ 0.14
CLPTM1O96005 F2RL1-201ENST00000296677 2914 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
CLPTM1O96005 PEX11G-201ENST00000221480 1062 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
CLPTM1O96005 GGCT-202ENST00000275428 1173 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
CLPTM1O96005 COMTD1-201ENST00000372538 976 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
CLPTM1O96005 PLCB1-204ENST00000404098 1260 ntTSL 3 BASIC15.91■□□□□ 0.14
CLPTM1O96005 MAGI2-AS3-203ENST00000424477 520 ntTSL 4 BASIC15.91■□□□□ 0.14
CLPTM1O96005 ST6GALNAC4P1-201ENST00000435385 499 ntBASIC15.91■□□□□ 0.14
CLPTM1O96005 AL445472.1-201ENST00000452532 1007 ntTSL 2 BASIC15.91■□□□□ 0.14
CLPTM1O96005 AL136307.1-201ENST00000454882 411 ntTSL 2 BASIC15.91■□□□□ 0.14
CLPTM1O96005 SNX5-210ENST00000481323 562 ntTSL 3 BASIC15.91■□□□□ 0.14
CLPTM1O96005 CNTD2-203ENST00000513948 787 ntAPPRIS ALT2 TSL 2 BASIC15.91■□□□□ 0.14
CLPTM1O96005 CD81-212ENST00000526072 1172 ntTSL 5 BASIC15.91■□□□□ 0.14
CLPTM1O96005 LTBR-211ENST00000543190 785 ntTSL 3 BASIC15.91■□□□□ 0.14
CLPTM1O96005 AC009065.1-201ENST00000564055 1225 ntBASIC15.91■□□□□ 0.14
CLPTM1O96005 ATP6V0C-203ENST00000565223 668 ntTSL 3 BASIC15.91■□□□□ 0.14
CLPTM1O96005 ATP6V0C-204ENST00000568562 477 ntTSL 3 BASIC15.91■□□□□ 0.14
CLPTM1O96005 TMEM220-AS1-201ENST00000579114 575 ntTSL 4 BASIC15.91■□□□□ 0.14
CLPTM1O96005 BVES-AS1-203ENST00000580511 853 ntTSL 5 BASIC15.91■□□□□ 0.14
CLPTM1O96005 AL445228.2-201ENST00000605589 952 ntBASIC15.91■□□□□ 0.14
CLPTM1O96005 DLGAP1-214ENST00000539435 2402 ntTSL 2 BASIC15.91■□□□□ 0.14
CLPTM1O96005 RNF11-201ENST00000242719 3084 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
Retrieved 100 of 98,524 protein–RNA pairs in 30.9 ms